| Contig-U13199-1 |
| Contig ID |
Contig-U13199-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1141 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
1695584 |
| End point |
1696728 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
3 |
| Number of EST |
4 |
| Link to clone list |
U13199 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 7 |
| Homology vs DNA |
Query= Contig-U13199-1 (Contig-U13199-1Q) /CSM_Contig/Contig-U13199-1Q.Seq.d
(1141 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ373467) Dictyostelium discoideum cDNA clone:ddc3o02, 3' e... 597 0.0 2
(BJ377456) Dictyostelium discoideum cDNA clone:ddc24k13, 3' ... 555 0.0 2
(BJ359909) Dictyostelium discoideum cDNA clone:ddc3o02, 5' e... 607 0.0 2
(BJ401348) Dictyostelium discoideum cDNA clone:dds22p19, 3' ... 180 8e-41 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 4e-07 15
(EX622888) 255422698 Pea aphid whole body normalized full le... 46 1e-06 2
(FF331108) 280445459 Pea aphid whole body normalized full le... 46 1e-06 2
(CK661492) LP21051.5prime LP Drosophila melanogaster larval-... 50 3e-06 3
(FE114815) LV_HC_RA061J15r Litopenaeus vannamei hemocyte cDN... 56 2e-05 2
(BX539342) Mouse DNA sequence from clone RP24-67F19 on chrom... 50 2e-05 4
(EY336587) CAWY7784.fwd CAWY Helobdella robusta Subtracted E... 48 4e-05 3
(AC121706) Rattus norvegicus clone CH230-182L2, *** SEQUENCI... 50 8e-05 4
(U43733) Drosophila melanogaster abrupt (ab) mRNA, complete ... 50 9e-05 3
(CQ581982) Sequence 9740 from Patent WO0171042. 50 1e-04 3
(AY170918) Dictyostelium discoideum pats1 gene, partial cds. 44 1e-04 5
(BT001583) Drosophila melanogaster RE25924 full insert cDNA. 50 1e-04 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 1e-04 13
(CQ586634) Sequence 14392 from Patent WO0171042. 48 1e-04 4
(AC122432) Mus musculus BAC clone RP24-187F8 from 7, complet... 50 1e-04 5
(AY089654) Drosophila melanogaster RH12258 full insert cDNA. 48 1e-04 3
(CQ586635) Sequence 14393 from Patent WO0171042. 48 2e-04 3
(BZ154236) CH230-360K5.TJ CHORI-230 Segment 2 Rattus norvegi... 44 2e-04 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 48 2e-04 11
(AC106523) Rattus norvegicus clone CH230-25H15, WORKING DRAF... 52 2e-04 6
(FK715945) pl_test2-B8 Ilyanassa (snail) 0-48h Ilyanassa obs... 50 3e-04 2
(FK718835) pl_074-H8 Ilyanassa (snail) 0-48h Ilyanassa obsol... 50 3e-04 2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 40 3e-04 10
(AL061266) Drosophila melanogaster genome survey sequence T7... 48 4e-04 2
(U93006) Drosophila iki hunchback protein gene, partial cds. 40 4e-04 3
(BB198213) Mus musculus adult male spinal cord cDNA, RIKEN f... 50 4e-04 3
(FM203784) Triticum aestivum GSS, clone RD-18R_B12_A_093.ab1. 50 4e-04 2
(CK402768) AUF_IfInt_207_g14 Ictalurus furcatus intestine cD... 52 6e-04 2
(AF051665) Drosophila silvestris fruitless (fru) gene, exons... 54 7e-04 2
(EH014752) USDA-FP_187421 Lysiphlebus testaceipes adult whol... 42 8e-04 3
(CW976569) AIAA-aab52a02.g1 Ancylostoma caninum whole genome... 58 8e-04 1
(EX475617) EST_lsal_evj_788337 lsalevj mixed_tissue_mixed_st... 58 8e-04 1
(AF051672) Drosophila silvestris fruitless type A (fru) mRNA... 54 8e-04 2
(EC852242) HAE00001449 Home-made, regular (lib1_ha) Histiona... 44 9e-04 2
(AF051668) Drosophila heteroneura fruitless type A (fru) mRN... 54 0.001 2
(AC179007) Strongylocentrotus purpuratus clone R3-1108K21, W... 42 0.001 6
(EY342296) CAWZ11762.fwd CAWZ Helobdella robusta Primary Lat... 56 0.001 2
(EY388024) CAXA7073.fwd CAXA Helobdella robusta Subtracted L... 56 0.001 2
(AC126697) Rattus norvegicus clone CH230-6K16, WORKING DRAFT... 52 0.001 4
(CO545357) LyEST13477 Sea lamprey LyEST Petromyzon marinus c... 48 0.001 2
(CK895586) SGP158104 Atlantic salmon Swimbladder cDNA librar... 50 0.001 2
(DE224535) Trifolium pratense DNA, clone:RCG16420. 50 0.001 2
(DE225901) Trifolium pratense DNA, clone:RCG18214. 50 0.001 2
(DE235129) Trifolium pratense DNA, clone:RCG29784. 50 0.001 2
(DE226757) Trifolium pratense DNA, clone:RCG19263. 50 0.001 2
(CK895836) SGP158365 Atlantic salmon Swimbladder cDNA librar... 50 0.001 2
(AC095173) Rattus norvegicus clone CH230-8O21, WORKING DRAFT... 42 0.001 5
(CK896056) SGP158591 Atlantic salmon Swimbladder cDNA librar... 50 0.001 2
(DV106194) SGP280779 Atlantic salmon Liver cDNA library Salm... 50 0.001 2
(CK889440) SGP161462 Atlantic salmon Liver cDNA library Salm... 50 0.001 2
(U93008) Drosophila lineosetae hunchback protein gene, parti... 42 0.001 3
(CK897076) SGP159636 Atlantic salmon Swimbladder cDNA librar... 50 0.001 2
(CN242942) EST008814 Mycelium and yeast cells from Paracocci... 42 0.002 2
(AC104323) Mus musculus strain C57BL/6J chromosome 17 clone ... 42 0.002 4
(AC117900) Rattus norvegicus clone CH230-320C16, *** SEQUENC... 52 0.002 6
(BJ360545) Dictyostelium discoideum cDNA clone:ddc6l13, 5' e... 50 0.002 2
(CT025573) Mouse DNA sequence from clone RP24-274P18 on chro... 42 0.002 4
(CK896320) SGP158862 Atlantic salmon Swimbladder cDNA librar... 50 0.002 2
(AE002140) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 44 0.002 3
(BJ362754) Dictyostelium discoideum cDNA clone:ddc23h10, 5' ... 50 0.002 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 42 0.002 11
(CK887553) SGP164420 Atlantic salmon Kidney cDNA library Sal... 50 0.002 2
(CK888010) SGP149211 Atlantic salmon Liver cDNA library Salm... 50 0.002 2
(CK896032) SGP158567 Atlantic salmon Swimbladder cDNA librar... 50 0.002 2
(CK889382) SGP161400 Atlantic salmon Liver cDNA library Salm... 50 0.002 2
(AX344565) Sequence 16 from Patent WO0200932. 36 0.002 16
(CK896854) SGP159410 Atlantic salmon Swimbladder cDNA librar... 50 0.002 2
(CK888747) SGP160744 Atlantic salmon Liver cDNA library Salm... 50 0.002 2
(CK888710) SGP160704 Atlantic salmon Liver cDNA library Salm... 50 0.002 2
(CK887971) SGP149172 Atlantic salmon Liver cDNA library Salm... 50 0.002 2
(CN242637) EST008509 Mycelium and yeast cells from Paracocci... 42 0.002 2
(AV948728) Ciona intestinalis cDNA, clone:cieg03j06, 5' end,... 50 0.002 2
(EH655012) EST05893 Paracoccidioides brasiliensis pCMV-SPORT... 42 0.002 2
(DQ121042) Hucho taimen clone ZA-38 microsatellite sequence. 50 0.002 2
(AZ145580) SP_0021_B1_G11_T7 Strongylocentrotus purpuratus, ... 42 0.002 2
(CQ581981) Sequence 9739 from Patent WO0171042. 50 0.002 3
(FF989492) CBWU106967.b1 Yutaka Satou unpublished cDNA libra... 50 0.002 2
(BB934009) Trifolium pratense cDNA clone:RCC06573. 50 0.003 2
(EH652829) EST03710 Paracoccidioides brasiliensis pCMV-SPORT... 42 0.003 2
(CK895185) SGP154437 Atlantic salmon Swimbladder cDNA librar... 50 0.003 2
(AV948701) Ciona intestinalis cDNA, clone:cieg03h14, 5' end,... 50 0.003 2
(AV951533) Ciona intestinalis cDNA, clone:cieg04h14, 5' end,... 50 0.003 2
(AF441556) Pinus taeda PtTX4101 microsatellite sequence. 48 0.003 2
(CK888277) SGP149484 Atlantic salmon Liver cDNA library Salm... 50 0.003 2
(BZ205467) CH230-341P11.TJ CHORI-230 Segment 2 Rattus norveg... 40 0.003 3
(BW203474) Ciona intestinalis cDNA, clone:cicl084j24, 5' end... 50 0.003 2
(EH652377) EST03258 Paracoccidioides brasiliensis pCMV-SPORT... 42 0.003 2
(EJ253601) 1095347003980 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.003 2
(CK896255) SGP158795 Atlantic salmon Swimbladder cDNA librar... 50 0.003 2
(DE229368) Trifolium pratense DNA, clone:RCG22484. 50 0.003 2
(FF906540) CBWU37625.b1 Yutaka Satou unpublished cDNA librar... 50 0.003 2
(AV988625) Ciona intestinalis cDNA, clone:citb32o02, 5' end,... 50 0.003 2
(AC154516) Mus musculus BAC clone RP24-83D23 from chromosome... 56 0.003 1
(AC129219) Mus musculus BAC clone RP24-474C15 from chromosom... 56 0.003 1
(AJ875064) Helicoverpa armigera microsatellite DNA, CryiAc s... 56 0.003 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 56 0.003 1
>(BJ373467) Dictyostelium discoideum cDNA clone:ddc3o02, 3' end,
single read.
Length = 639
Score = 597 bits (301), Expect(2) = 0.0
Identities = 310/311 (99%)
Strand = Plus / Minus
Query: 831 aaaccattacaatcaaataaagtaatgaaagcgccatctacaatctcaccaaaagttata 890
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaaccattacgatcaaataaagtaatgaaagcgccatctacaatctcaccaaaagttata 253
Query: 891 gattctatattcataaagaaaggaaatagtttagttagaaagaaacttgatgataattat 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gattctatattcataaagaaaggaaatagtttagttagaaagaaacttgatgataattat 193
Query: 951 ataacaattggaaataaattaattagatctaatacagccacgacaacagcagcagcaaca 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ataacaattggaaataaattaattagatctaatacagccacgacaacagcagcagcaaca 133
Query: 1011 acaacaatcaatataccaatatctcactctaaattatcgatagtaccaaaaccaatagta 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acaacaatcaatataccaatatctcactctaaattatcgatagtaccaaaaccaatagta 73
Query: 1071 agaagaccaattataaaaccaccattattaattaataataaaanaaaattagnaaaagat 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 agaagaccaattataaaaccaccattattaattaataataaaanaaaattagnaaaagat 13
Query: 1131 aaagaagcgat 1141
|||||||||||
Sbjct: 12 aaagaagcgat 2
Score = 513 bits (259), Expect(2) = 0.0
Identities = 261/262 (99%)
Strand = Plus / Minus
Query: 504 aaagaaagcttaaataaaattaatgcagttaaaccaccaccaccattatcatcccaattg 563
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 639 aaagaaagcttaaataaaattaatgcagttaanccaccaccaccattatcatcccaattg 580
Query: 564 aaatcgtcaaatgtaatatttagtggttttaaaccaccatctttcaaaacacaaaataaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaatcgtcaaatgtaatatttagtggttttaaaccaccatctttcaaaacacaaaataaa 520
Query: 624 ttatttacatcccgttctaccactattggtagtaataaatattatccatcaccatcatca 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttatttacatcccgttctaccactattggtagtaataaatattatccatcaccatcatca 460
Query: 684 ccatcatcgagaatatttttaaaggcaccaatgattacaccaaaaagattaacatttaaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccatcatcgagaatatttttaaaggcaccaatgattacaccaaaaagattaacatttaaa 400
Query: 744 cctacagcatcagcaatagcat 765
||||||||||||||||||||||
Sbjct: 399 cctacagcatcagcaatagcat 378
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,304,170,787
Number of extensions: 97724600
Number of successful extensions: 10592109
Number of sequences better than 10.0: 7321
Length of query: 1141
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1117
Effective length of database: 97,308,875,965
Effective search space: 108694014452905
Effective search space used: 108694014452905
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 6 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
1 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |