>Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Contig-U13195-1Q.Seq.d
ACAACANCAGCAACAGCAACAACAANAACAACANCAACANCAACAACAAC
AATAACAACAACTGCATCACCTACNNCTTCAACAACAGGAGCTACAACCA
CCACCACNCACATCACCCACAACATTAACNNACTACTACNACTAC

est1=SFJ224F,1,146

TTXATATTXTTXTXTTTITTTASPTXSTTGATTTTTHITHNINXLLXL

Frame A:
TTXATATTXTTXTXTTTITTTASPTXSTTGATTTTTHITHNINXLLXL


Frame B:
qxqqqqqqxqxqxqqqq*qqlhhlxlqqqelqpppxtspttltxyyxy


Frame C:
nxsnsnnxnnxnxnnnnnnncityxfnnrsynhhhxhhpqh*xtttt

Query= Contig-U13195-1 (Contig-U13195-1Q)
/CSM_Contig/Contig-U13195-1Q.Seq.d
         (145 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Conti...   129  8e-31
Contig-U13509-1 (Contig-U13509-1Q) /CSM_Contig/Conti...    32  0.15
Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Conti...    32  0.15
Contig-U10643-1 (Contig-U10643-1Q) /CSM_Contig/Conti...    32  0.15
Contig-U12728-1 (Contig-U12728-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U09114-1 (Contig-U09114-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U14871-1 (Contig-U14871-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14193-1 (Contig-U14193-1Q) /CSM_Contig/Conti...    28  2.3

>Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Contig-U13195-1Q.Seq.d
          Length = 145

 Score =  129 bits (65), Expect = 8e-31
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                       
Query: 63  tgcatcacctacnncttcaacaacaggagctacaaccaccaccacncacatcacccacaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tgcatcacctacnncttcaacaacaggagctacaaccaccaccacncacatcacccacaa 122

                                  
Query: 123 cattaacnnactactacnactac 145
           |||||||||||||||||||||||
Sbjct: 123 cattaacnnactactacnactac 145


>Contig-U13509-1 (Contig-U13509-1Q) /CSM_Contig/Contig-U13509-1Q.Seq.d
          Length = 1025

 Score = 32.2 bits (16), Expect = 0.15
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 92  ctacaaccaccaccac 107
           ||||||||||||||||
Sbjct: 178 ctacaaccaccaccac 193


>Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Contig-U12127-1Q.Seq.d
          Length = 1302

 Score = 32.2 bits (16), Expect = 0.15
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 92  ctacaaccaccaccac 107
           ||||||||||||||||
Sbjct: 158 ctacaaccaccaccac 173


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1254
Number of Sequences: 6905
Number of extensions: 1254
Number of successful extensions: 261
Number of sequences better than 10.0: 89
length of query: 145
length of database: 5,674,871
effective HSP length: 15
effective length of query: 130
effective length of database: 5,571,296
effective search space: 724268480
effective search space used: 724268480
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Contig-U13195-1Q.Seq.d
         (145 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ389559) Dictyostelium discoideum cDNA clone:dds19o06, 5' ...   129   3e-26  1
(FG753555) G1146P313FK13.T0 Anolis carolinensis pooled norma...    44   1.2    1
(FG725605) G1144P339FH6.T0 Anolis carolinensis pooled normal...    44   1.2    1
(AC188685) Pan troglodytes BAC clone CH251-640D14 from chrom...    42   4.8    1
(AC000117) Homo sapiens BAC clone CTB-62A19 from 7, complete...    42   4.8    1
(AC216362) Macaca mulatta clone CH250-205J11, WORKING DRAFT ...    42   4.8    1
(AC195109) Macaca mulatta clone CH250-474P8, WORKING DRAFT S...    42   4.8    1
(CL502524) SAIL_713_B01.v1 SAIL Collection Arabidopsis thali...    42   4.8    1
(AM091672) Lutzomyia longipalpis EST clone NSFM-08g07, seque...    42   4.8    1
(CN982700) 51218_126_030_B11 Fundulus Heteroclitus Liver Fun...    42   4.8    1
(EY792715) CR05-C3-700-145-H03-CT.F Mandarin fruit, developm...    32   8.6    2

>(BJ389559) Dictyostelium discoideum cDNA clone:dds19o06, 5' end,
           single read.
          Length = 146

 Score =  129 bits (65), Expect = 3e-26
 Identities = 83/83 (100%)
 Strand = Plus / Plus


Query: 63  tgcatcacctacnncttcaacaacaggagctacaaccaccaccacncacatcacccacaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tgcatcacctacnncttcaacaacaggagctacaaccaccaccacncacatcacccacaa 122


Query: 123 cattaacnnactactacnactac 145
           |||||||||||||||||||||||
Sbjct: 123 cattaacnnactactacnactac 145

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 51,940,588
Number of extensions: 4149108
Number of successful extensions: 637726
Number of sequences better than 10.0: 11
Length of query: 145
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 123
Effective length of database: 93,199,600,587
Effective search space: 11463550872201
Effective search space used: 11463550872201
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

Query= Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Contig-U13195-1Q.Seq.d
         (145 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.310    0.116    0.285

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 40,922,280
Number of extensions: 310198
Number of successful extensions: 2145
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1790
Number of HSP's successfully gapped: 0
Length of query: 48
Length of database: 1,051,180,864
Length adjustment: 21
Effective length of query: 27
Effective length of database: 983,213,125
Effective search space: 26546754375
Effective search space used: 26546754375
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 25 (14.2 bits)

 psg: 0.88  gvh: 0.44  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.61  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear

>> prediction for Contig-U13195-1 is mit