Contig-U02109-1
Contig ID Contig-U02109-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02109-1 (Contig-U02109-1Q) /CSM_Contig/Contig-U02109-1Q.Seq.d
CCGGTGCTTTCAAATTGGGTTCAAANTACGCTCCAACCATTTTCCCACAA
TTGGAGGCTGCAAAAAAGGGTTTNTNTCAAGNACTTTGGTTATTAAATGA
CTATGTCACTGAAGTCGGNACTATGAANATGTTTGTNTTTTGGAATAACG
CTCAAGGTNANAAANAATTGATCNCTCCNCCNCTCGGTGATGGNACCATC
CTTCCAGGTGTCACTCGTGATAGNATCCTTAAATTAACTCAACAATGGGG
TGAATTCAAAATCNCTGAAAANAATTTCNCAATGACTGAATTAGCAAAAG
CCATCAAANAAGGTANAGNATTTGAAGCNTTCGGNGCTGGNACTGCCGCC
ATCGTCTCTCCAATTGAATCAATNTCTTACAAAGGTGAAAATTANAGNAT
CCCNATTGATGCTTCTTTAAANTGTGGNCCATTAACAAAAAGAATTAGTG
ATT

Gap no gap
Contig length 453
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3338212
End point 3338665
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U02109
List of clone(s)

est1=VFD532Z,1,454
Translated Amino Acid sequence
GAFKLGSXYAPTIFPQLEAAKKGXXQXLWLLNDYVTEVGTMXMFVFWNNAQGXKXLIXPP
LGDGTILPGVTRDXILKLTQQWGEFKIXEXNFXMTELAKAIKXGXXFEAFGAGTAAIVSP
IESXSYKGENXXIPIDASLXCGPLTKRISD


Translated Amino Acid sequence (All Frames)
Frame A:
pvlsnwvqxtlqpfshnwrlqkrvxxkxfgy*mtmslksxl*xclxfgitlkvxxn*slx
xsvmxpsfqvslvixsln*lnngvnskslkxisq*ln*qkpsxkvxxlkxsxlxlppssl
qlnqxltkvkixxsxlmll*xvxh*qkelvi


Frame B:
rcfqigfkxrsnhfptiggckkgfxsxtlvik*lch*srxyexvcxle*rsrxxxidxsx
xr*wxhpsrchs**xp*instmg*iqnx*kxfxnd*iskshqxrxxi*sxrxwxcrhrls
n*inxlqr*klxxpx*cffkxwxinkkn**


Frame C:
GAFKLGSXYAPTIFPQLEAAKKGXXQXLWLLNDYVTEVGTMXMFVFWNNAQGXKXLIXPP
LGDGTILPGVTRDXILKLTQQWGEFKIXEXNFXMTELAKAIKXGXXFEAFGAGTAAIVSP
IESXSYKGENXXIPIDASLXCGPLTKRISD


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02109-1 (Contig-U02109-1Q)
/CSM_Contig/Contig-U02109-1Q.Seq.d
(453 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02109-1 (Contig-U02109-1Q) /CSM_Contig/Conti... 684 0.0
Contig-U13302-1 (Contig-U13302-1Q) /CSM_Contig/Conti... 32 0.49
Contig-U10682-1 (Contig-U10682-1Q) /CSM_Contig/Conti... 32 0.49
Contig-U06606-1 (Contig-U06606-1Q) /CSM_Contig/Conti... 32 0.49
Contig-U04831-1 (Contig-U04831-1Q) /CSM_Contig/Conti... 32 0.49
Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Conti... 30 1.9
Contig-U11389-1 (Contig-U11389-1Q) /CSM_Contig/Conti... 30 1.9
Contig-U11206-1 (Contig-U11206-1Q) /CSM_Contig/Conti... 30 1.9
Contig-U11175-1 (Contig-U11175-1Q) /CSM_Contig/Conti... 30 1.9
Contig-U10447-1 (Contig-U10447-1Q) /CSM_Contig/Conti... 30 1.9

>Contig-U02109-1 (Contig-U02109-1Q) /CSM_Contig/Contig-U02109-1Q.Seq.d
Length = 453

Score = 684 bits (345), Expect = 0.0
Identities = 447/453 (98%)
Strand = Plus / Plus


Query: 1 ccggtgctttcaaattgggttcaaantacgctccaaccattttcccacaattggaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggtgctttcaaattgggttcaaantacgctccaaccattttcccacaattggaggctg 60


Query: 61 caaaaaagggtttntntcaagnactttggttattaaatgactatgtcactgaagtcggna 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaaaaagggtttntntcaagnactttggttattaaatgactatgtcactgaagtcggna 120


Query: 121 ctatgaanatgtttgtnttttggaataacgctcaaggtnanaaanaattgatcnctccnc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatgaanatgtttgtnttttggaataacgctcaaggtnanaaanaattgatcnctccnc 180


Query: 181 cnctcggtgatggnaccatccttccaggtgtcactcgtgatagnatccttaaattaactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cnctcggtgatggnaccatccttccaggtgtcactcgtgatagnatccttaaattaactc 240


Query: 241 aacaatggggtgaattcaaaatcnctgnnnnnnntttcncaatgactgaattagcaaaag 300
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 241 aacaatggggtgaattcaaaatcnctgaaaanaatttcncaatgactgaattagcaaaag 300


Query: 301 ccatcaaanaaggtanagnatttgaagcnttcggngctggnactgccgccatcgtctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccatcaaanaaggtanagnatttgaagcnttcggngctggnactgccgccatcgtctctc 360


Query: 361 caattgaatcaatntcttacaaaggtgaaaattanagnatcccnattgatgcttctttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caattgaatcaatntcttacaaaggtgaaaattanagnatcccnattgatgcttctttaa 420


Query: 421 antgtggnccattaacaaaaagaattagtgatt 453
|||||||||||||||||||||||||||||||||
Sbjct: 421 antgtggnccattaacaaaaagaattagtgatt 453


>Contig-U13302-1 (Contig-U13302-1Q) /CSM_Contig/Contig-U13302-1Q.Seq.d
Length = 896

Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 7 ctttcaaattgggttc 22
||||||||||||||||
Sbjct: 868 ctttcaaattgggttc 853


>Contig-U10682-1 (Contig-U10682-1Q) /CSM_Contig/Contig-U10682-1Q.Seq.d
Length = 1607

Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 356 ctctccaattgaatca 371
||||||||||||||||
Sbjct: 238 ctctccaattgaatca 253


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2114
Number of Sequences: 6905
Number of extensions: 2114
Number of successful extensions: 197
Number of sequences better than 10.0: 65
length of query: 453
length of database: 5,674,871
effective HSP length: 16
effective length of query: 437
effective length of database: 5,564,391
effective search space: 2431638867
effective search space used: 2431638867
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.14
Homology vs DNA
Query= Contig-U02109-1 (Contig-U02109-1Q) /CSM_Contig/Contig-U02109-1Q.Seq.d
(453 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ430717) Dictyostelium discoideum cDNA clone:ddv8o07, 3' e... 720 0.0 1
(DX771457) 2608090 VV07 Ustilago maydis genomic clone 110996... 46 1.1 1
(DX769106) 2632085 VV07 Ustilago maydis genomic clone 116328... 46 1.1 1
(DX711041) 2346237 VV03 Ustilago maydis genomic clone 100271... 46 1.1 1
(DX705637) 2510954 VV03 Ustilago maydis genomic clone 107865... 46 1.1 1
(DX677161) 2194803 VV03 Ustilago maydis genomic clone 906589... 46 1.1 1
(DX659528) 1984522 VV02 Ustilago maydis genomic clone 803960... 46 1.1 1
(DX628804) 2015922 VV02 Ustilago maydis genomic clone 825171... 46 1.1 1
(EH032975) TDO_14_B01 Dormant Teliospore Ustilago maydis cDN... 46 1.1 1
(EH031101) TDO_33_H02 Dormant Teliospore Ustilago maydis cDN... 46 1.1 1
(CF645338) K35_C07 Filamentous Forced Diploid Ustilago maydi... 46 1.1 1
(CF644499) K21_H02 Filamentous Forced Diploid Ustilago maydi... 46 1.1 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 4.5 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 44 4.5 1
(AL662948) Oryza sativa genomic DNA, chromosome 4, BAC clone... 44 4.5 1
(AK122044) Oryza sativa Japonica Group cDNA clone:J033113M07... 44 4.5 1
(AC145476) Oryza sativa Japonica Group chromosome 5 clone B1... 44 4.5 1
(AC136525) Oryza sativa Japonica Group chromosome 5 clone P0... 44 4.5 1
(AC130724) Oryza sativa Japonica Group chromosome 5 clone P0... 44 4.5 1
(EA720514) Sequence 99393 from patent US 7365185. 44 4.5 1
(EA701760) Sequence 80639 from patent US 7365185. 44 4.5 1
(EA701758) Sequence 80637 from patent US 7365185. 44 4.5 1
(EA696309) Sequence 75188 from patent US 7365185. 44 4.5 1
(EA665545) Sequence 44424 from patent US 7365185. 44 4.5 1
(EA665535) Sequence 44414 from patent US 7365185. 44 4.5 1
(AC129955) Bos taurus clone RP42-225J6, *** SEQUENCING IN PR... 44 4.5 1
(AL442106) Oryza sativa genomic DNA, chromosome 4, BAC clone... 44 4.5 1
(AC173412) Bos taurus clone CH240-281M11, WORKING DRAFT SEQU... 44 4.5 1
(EI249560) OR__Ba0051M06.f OR__Ba Oryza rufipogon genomic cl... 44 4.5 1
(DU871067) 102367 Tomato HindIII BAC Library Solanum lycoper... 44 4.5 1
(CL853310) OR_CBa0082H09.r OR_CBa Oryza rufipogon genomic cl... 44 4.5 1
(CL835355) OR_CBa0059B07.r OR_CBa Oryza rufipogon genomic cl... 44 4.5 1
(CL743740) OR_BBa0080D10.f OR_BBa Oryza nivara genomic clone... 44 4.5 1
(CL716090) OR_BBa0042I03.r OR_BBa Oryza nivara genomic clone... 44 4.5 1
(CL715038) OR_BBa0039P12.r OR_BBa Oryza nivara genomic clone... 44 4.5 1
(CL710997) OR_BBa0034H24.r OR_BBa Oryza nivara genomic clone... 44 4.5 1

>(BJ430717) Dictyostelium discoideum cDNA clone:ddv8o07, 3' end,
single read.
Length = 454

Score = 720 bits (363), Expect = 0.0
Identities = 453/453 (100%)
Strand = Plus / Minus


Query: 1 ccggtgctttcaaattgggttcaaantacgctccaaccattttcccacaattggaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccggtgctttcaaattgggttcaaantacgctccaaccattttcccacaattggaggctg 395


Query: 61 caaaaaagggtttntntcaagnactttggttattaaatgactatgtcactgaagtcggna 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caaaaaagggtttntntcaagnactttggttattaaatgactatgtcactgaagtcggna 335


Query: 121 ctatgaanatgtttgtnttttggaataacgctcaaggtnanaaanaattgatcnctccnc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctatgaanatgtttgtnttttggaataacgctcaaggtnanaaanaattgatcnctccnc 275


Query: 181 cnctcggtgatggnaccatccttccaggtgtcactcgtgatagnatccttaaattaactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cnctcggtgatggnaccatccttccaggtgtcactcgtgatagnatccttaaattaactc 215


Query: 241 aacaatggggtgaattcaaaatcnctgaaaanaatttcncaatgactgaattagcaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aacaatggggtgaattcaaaatcnctgaaaanaatttcncaatgactgaattagcaaaag 155


Query: 301 ccatcaaanaaggtanagnatttgaagcnttcggngctggnactgccgccatcgtctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ccatcaaanaaggtanagnatttgaagcnttcggngctggnactgccgccatcgtctctc 95


Query: 361 caattgaatcaatntcttacaaaggtgaaaattanagnatcccnattgatgcttctttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 caattgaatcaatntcttacaaaggtgaaaattanagnatcccnattgatgcttctttaa 35


Query: 421 antgtggnccattaacaaaaagaattagtgatt 453
|||||||||||||||||||||||||||||||||
Sbjct: 34 antgtggnccattaacaaaaagaattagtgatt 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 312,553,260
Number of extensions: 16932795
Number of successful extensions: 918170
Number of sequences better than 10.0: 36
Length of query: 453
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 430
Effective length of database: 99,442,330,388
Effective search space: 42760202066840
Effective search space used: 42760202066840
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U02109-1 (Contig-U02109-1Q) /CSM_Contig/Contig-U02109-1Q.Seq.d
(453 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

U88029_1(U88029|pid:none) Schizosaccharomyces pombe branched-cha... 120 1e-26
BC098973_1(BC098973|pid:none) Xenopus laevis hypothetical protei... 117 1e-25
BT059483_1(BT059483|pid:none) Salmo salar clone ssal-rgf-528-103... 117 1e-25
BC076468_1(BC076468|pid:none) Danio rerio branched chain aminotr... 117 2e-25
BT047206_1(BT047206|pid:none) Salmo salar clone ssal-evd-508-296... 116 3e-25
BC082673_1(BC082673|pid:none) Xenopus laevis hypothetical LOC494... 114 1e-24
AE014298_1988(AE014298|pid:none) Drosophila melanogaster chromos... 114 1e-24
U21550_1(U21550|pid:none) Caenorhabditis elegans ECA39 mRNA, com... 113 2e-24
BC059513_1(BC059513|pid:none) Danio rerio branched chain aminotr... 110 1e-23
BX547928_1(BX547928|pid:none) Zebrafish DNA sequence from clone ... 110 1e-23
AJ278701_1(AJ278701|pid:none) Rattus norvegicus mRNA for cytosol... 110 2e-23
(P54690) RecName: Full=Branched-chain-amino-acid aminotransferas... 110 2e-23
CU207315_3(CU207315|pid:none) Mouse DNA sequence from clone CH29... 110 2e-23
CU207315_1(CU207315|pid:none) Mouse DNA sequence from clone CH29... 110 2e-23
BC053706_1(BC053706|pid:none) Mus musculus branched chain aminot... 110 2e-23
BC121908_1(BC121908|pid:none) Xenopus tropicalis hypothetical pr... 110 2e-23
BC155938_1(BC155938|pid:none) Xenopus laevis hypothetical protei... 110 2e-23
(P24288) RecName: Full=Branched-chain-amino-acid aminotransferas... 109 3e-23
AK036309_1(AK036309|pid:none) Mus musculus 16 days neonate cereb... 109 3e-23
BC075501_1(BC075501|pid:none) Xenopus tropicalis branched chain ... 108 4e-23
AF165887_1(AF165887|pid:none) Rattus norvegicus cytosolic branch... 107 1e-22
AK128527_1(AK128527|pid:none) Homo sapiens cDNA FLJ46685 fis, cl... 107 2e-22
CR382136_291(CR382136|pid:none) Debaryomyces hansenii strain CBS... 107 2e-22
(P54687) RecName: Full=Branched-chain-amino-acid aminotransferas... 107 2e-22
BT026222_1(BT026222|pid:none) Bos taurus branched chain aminotra... 106 3e-22
AF050173_1(AF050173|pid:none) Ovis aries mitochondrial branched ... 105 6e-22
CP000499_402(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 105 6e-22
AK294879_1(AK294879|pid:none) Homo sapiens cDNA FLJ55468 complet... 104 8e-22
AB171258_1(AB171258|pid:none) Macaca fascicularis brain cDNA clo... 104 1e-21
(O15382) RecName: Full=Branched-chain-amino-acid aminotransferas... 103 1e-21
CR380952_381(CR380952|pid:none) Candida glabrata strain CBS138 c... 103 1e-21
U21551_1(U21551|pid:none) Human ECA39 mRNA, complete cds. 103 1e-21
BC004243_1(BC004243|pid:none) Homo sapiens branched chain aminot... 103 1e-21
CP000496_418(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 103 2e-21
(P38891) RecName: Full=Branched-chain-amino-acid aminotransferas... 102 3e-21
(P47176) RecName: Full=Branched-chain-amino-acid aminotransferas... 102 5e-21
(O35854) RecName: Full=Branched-chain-amino-acid aminotransferas... 102 5e-21
BC061790_1(BC061790|pid:none) Rattus norvegicus branched chain a... 102 5e-21
(Q5REP0) RecName: Full=Branched-chain-amino-acid aminotransferas... 101 7e-21
AF031467_1(AF031467|pid:none) Mus musculus branched-chain amino ... 100 1e-20
(O35855) RecName: Full=Branched-chain-amino-acid aminotransferas... 100 1e-20
FM992690_520(FM992690|pid:none) Candida dubliniensis CD36 chromo... 100 1e-20
CR382121_429(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 100 1e-20
U62739_1(U62739|pid:none) Human branched-chain amino acid aminot... 100 1e-20
CP000079_210(CP000079|pid:none) Leishmania major strain Friedlin... 98 1e-19
AM502245_130(AM502245|pid:none) Leishmania infantum chromosome 27. 97 2e-19
BX908811_12(BX908811|pid:none) Neurospora crassa DNA linkage gro... 96 4e-19
AM494964_221(AM494964|pid:none) Leishmania braziliensis chromoso... 96 5e-19
CR380959_3(CR380959|pid:none) Candida glabrata strain CBS138 chr... 96 5e-19
AM270062_43(AM270062|pid:none) Aspergillus niger contig An04c001... 95 7e-19
CU633895_235(CU633895|pid:none) Podospora anserina genomic DNA c... 93 3e-18
CU928179_11(CU928179|pid:none) Zygosaccharomyces rouxii strain C... 93 3e-18
FJ688373_1(FJ688373|pid:none) Agaricus bisporus branched chain a... 87 2e-16
X86568_1(X86568|pid:none) S.cerevisiae mRNA for Twt2p protein. 86 4e-16
CR382130_53(CR382130|pid:none) Yarrowia lipolytica strain CLIB12... 86 4e-16
AJ871330_1(AJ871330|pid:none) Nyctotherus ovalis partial gene fo... 84 1e-15
AB264664_1(AB264664|pid:none) Papilio xuthus mRNA for branched-c... 81 1e-14
BC033864_1(BC033864|pid:none) Homo sapiens branched chain aminot... 79 4e-14
CU640366_1066(CU640366|pid:none) Podospora anserina genomic DNA ... 73 3e-12
CP000698_3879(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 69 4e-11
AE017180_652(AE017180|pid:none) Geobacter sulfurreducens PCA, co... 69 4e-11
CP000394_739(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 68 9e-11
CP001087_1064(CP001087|pid:none) Desulfobacterium autotrophicum ... 67 2e-10
CP000478_3067(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 67 3e-10
AL451109_5(AL451109|pid:none) Neurospora crassa DNA linkage grou... 66 3e-10
CR522870_192(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 65 1e-09
CP000859_2656(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 64 2e-09
CP000383_2773(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 64 2e-09
CP001124_567(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 63 3e-09
EF214943_1(EF214943|pid:none) Callithrix jacchus clone G01-52.1_... 62 8e-09
AP008955_1581(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 62 8e-09
CP000148_2821(CP000148|pid:none) Geobacter metallireducens GS-15... 61 1e-08
AJ279090_3(AJ279090|pid:none) Staphylococcus carnosus ilvE gene ... 61 1e-08
AM920437_2063(AM920437|pid:none) Penicillium chrysogenum Wiscons... 61 1e-08
AM270013_16(AM270013|pid:none) Aspergillus niger contig An02c018... 59 4e-08
CU458896_1929(CU458896|pid:none) Mycobacterium abscessus chromos... 59 5e-08
AP009484_1857(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 59 7e-08
CP001322_388(CP001322|pid:none) Desulfatibacillum alkenivorans A... 59 7e-08
AP007171_508(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 58 9e-08
CP000854_3211(CP000854|pid:none) Mycobacterium marinum M, comple... 58 9e-08
AP006716_2449(AP006716|pid:none) Staphylococcus haemolyticus JCS... 58 9e-08
CP001628_811(CP001628|pid:none) Micrococcus luteus NCTC 2665, co... 58 1e-07
CP000480_4131(CP000480|pid:none) Mycobacterium smegmatis str. MC... 58 1e-07
CP000479_2182(CP000479|pid:none) Mycobacterium avium 104, comple... 57 2e-07
(Q10399) RecName: Full=Probable branched-chain-amino-acid aminot... 57 2e-07
DQ472004_1(DQ472004|pid:none) Staphylococcus xylosus strain DSM2... 57 2e-07
AP008934_2163(AP008934|pid:none) Staphylococcus saprophyticus su... 57 2e-07
CP000133_2691(CP000133|pid:none) Rhizobium etli CFN 42, complete... 57 2e-07
CP000142_2762(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 57 3e-07
(Q5HRJ8) RecName: Full=Probable branched-chain-amino-acid aminot... 57 3e-07
AE017333_3906(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 57 3e-07
CP001620_663(CP001620|pid:none) Corynebacterium kroppenstedtii D... 56 5e-07
AM746676_6023(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 56 5e-07
BA000035_2093(BA000035|pid:none) Corynebacterium efficiens YS-31... 56 5e-07
CP000885_533(CP000885|pid:none) Clostridium phytofermentans ISDg... 56 5e-07
(P63512) RecName: Full=Probable branched-chain-amino-acid aminot... 56 5e-07
(P39576) RecName: Full=Putative branched-chain-amino-acid aminot... 55 6e-07
BX248358_262(BX248358|pid:none) Corynebacterium diphtheriae grav... 55 8e-07
CP000251_3417(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 55 1e-06
CP000511_3516(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 55 1e-06
AM889285_2479(AM889285|pid:none) Gluconacetobacter diazotrophicu... 54 1e-06
CP001601_1700(CP001601|pid:none) Corynebacterium aurimucosum ATC... 54 1e-06
CP000568_848(CP000568|pid:none) Clostridium thermocellum ATCC 27... 54 2e-06
AX063979_1(AX063979|pid:none) Sequence 261 from Patent WO0100843... 53 3e-06
AP009044_2123(AP009044|pid:none) Corynebacterium glutamicum R DN... 53 3e-06
AF424637_1(AF424637|pid:none) Corynebacterium glutamicum transam... 53 3e-06
CP000463_1413(CP000463|pid:none) Rhodopseudomonas palustris BisA... 52 5e-06
CP001001_5506(CP001001|pid:none) Methylobacterium radiotolerans ... 52 5e-06
CP000560_3456(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 52 5e-06
CP001359_3546(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 52 7e-06
CP001348_1837(CP001348|pid:none) Clostridium cellulolyticum H10,... 52 9e-06
CP000157_1674(CP000157|pid:none) Erythrobacter litoralis HTCC259... 52 9e-06
CP000927_4070(CP000927|pid:none) Caulobacter sp. K31, complete g... 52 9e-06
CP000494_1643(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 52 9e-06
BX572607_35(BX572607|pid:none) Rhodopseudomonas palustris CGA009... 51 1e-05
CP000252_836(CP000252|pid:none) Syntrophus aciditrophicus SB, co... 51 1e-05
BA000040_7459(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 51 1e-05
CP000115_2505(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 51 1e-05
CP000301_1371(CP000301|pid:none) Rhodopseudomonas palustris BisB... 51 1e-05
AP008957_3613(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 51 1e-05
S13108(S13108) ECA39 protein - mouse &X17502_1(X17502|pid:none) 50 2e-05
CP000930_2411(CP000930|pid:none) Heliobacterium modesticaldum Ic... 50 2e-05
CP000250_4155(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 50 2e-05
CU234118_5719(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 50 2e-05
U68526_1(U68526|pid:none) Mus musculus branched chain aminotrans... 50 2e-05
CP000584_460(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 50 2e-05
CP001096_4780(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 50 2e-05
EF063592_2(EF063592|pid:none) Janthinobacterium lividum strain B... 50 2e-05
EF063589_12(EF063589|pid:none) Janthinobacterium lividum strain ... 50 2e-05
BX897699_975(BX897699|pid:none) Bartonella henselae strain Houst... 50 3e-05
CP000667_1225(CP000667|pid:none) Salinispora tropica CNB-440, co... 50 3e-05
CP001618_1410(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 49 4e-05
CP000699_772(CP000699|pid:none) Sphingomonas wittichii RW1, comp... 49 4e-05
AJ622895_1(AJ622895|pid:none) Triticum durum partial mRNA for DR... 49 7e-05
AJ574850_1(AJ574850|pid:none) Hordeum vulgare bcat-1 gene for br... 48 9e-05
CP000910_1039(CP000910|pid:none) Renibacterium salmoninarum ATCC... 48 9e-05
CP000494_585(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple... 48 9e-05
EU956127_1(EU956127|pid:none) Zea mays clone 1557808 branched-ch... 48 1e-04
BT026474_1(BT026474|pid:none) Arabidopsis thaliana At5g65780 mRN... 48 1e-04
BT063980_1(BT063980|pid:none) Zea mays full-length cDNA clone ZM... 48 1e-04
CP001069_332(CP001069|pid:none) Ralstonia pickettii 12J chromoso... 48 1e-04
EU956725_1(EU956725|pid:none) Zea mays clone 1571739 unknown mRNA. 48 1e-04
AL021684_11(AL021684|pid:none) Arabidopsis thaliana DNA chromoso... 48 1e-04
AM167904_747(AM167904|pid:none) Bordetella avium 197N complete g... 48 1e-04
(Q9FYA6) RecName: Full=Branched-chain-amino-acid aminotransferas... 48 1e-04
AM711867_1122(AM711867|pid:none) Clavibacter michiganensis subsp... 47 2e-04
CP000770_79(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, ... 47 2e-04
AY087619_1(AY087619|pid:none) Arabidopsis thaliana clone 37100 m... 47 2e-04
CU914166_544(CU914166|pid:none) Ralstonia solanacearum strain IP... 47 2e-04
AL646053_1328(AL646053|pid:none) Ralstonia solanacearum GMI1000 ... 47 2e-04
BT033917_1(BT033917|pid:none) Zea mays full-length cDNA clone ZM... 47 2e-04
CP001389_3468(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 47 2e-04
FJ376042_1(FJ376042|pid:none) Brassica rapa subsp. pekinensis br... 47 3e-04
CR382132_832(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 46 4e-04
AY034379_1(AY034379|pid:none) Capsicum annuum branched-chain ami... 46 5e-04
CP001330_128(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 46 5e-04
AP009152_1025(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 46 5e-04
AC020666_7(AC020666|pid:none) Oryza sativa chromosome 10 BAC OSJ... 45 6e-04
AP008216_1228(AP008216|pid:none) Oryza sativa (japonica cultivar... 45 6e-04
AP006627_1923(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 45 8e-04
CP000285_2899(CP000285|pid:none) Chromohalobacter salexigens DSM... 45 8e-04
CU207366_491(CU207366|pid:none) Gramella forsetii KT0803 complet... 45 0.001
BT033954_1(BT033954|pid:none) Zea mays full-length cDNA clone ZM... 44 0.001
CP000442_834(CP000442|pid:none) Burkholderia ambifaria AMMD chro... 44 0.001
CP001027_597(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 44 0.001
AC105927_10(AC105927|pid:none) Oryza sativa (japonica cultivar-g... 44 0.002
AB010075_13(AB010075|pid:none) Arabidopsis thaliana genomic DNA,... 43 0.003
AF193846_1(AF193846|pid:none) Solanum tuberosum branched-chain a... 43 0.004
CP000959_2442(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ... 43 0.004
CP000776_1019(CP000776|pid:none) Campylobacter hominis ATCC BAA-... 43 0.004
DQ826143_1(DQ826143|pid:none) Lactobacillus helveticus CNRZ32 br... 42 0.005
CP000517_1125(CP000517|pid:none) Lactobacillus helveticus DPC 45... 42 0.005
EU194916_1(EU194916|pid:none) Nicotiana benthamiana branched-cha... 42 0.005
CP000481_708(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 42 0.007
CP000454_2507(CP000454|pid:none) Arthrobacter sp. FB24, complete... 42 0.007
AE014295_501(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 41 0.011
CP001213_1392(CP001213|pid:none) Bifidobacterium animalis subsp.... 41 0.015
(Q9LE06) RecName: Full=Probable branched-chain-amino-acid aminot... 40 0.020
AK106376_1(AK106376|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.026
CR522870_85(CR522870|pid:none) Desulfotalea psychrophila LSv54 c... 40 0.033
AF193845_1(AF193845|pid:none) Solanum tuberosum branched-chain a... 39 0.044
(Q9LPM9) RecName: Full=Branched-chain-amino-acid aminotransferas... 39 0.057
AY088621_1(AY088621|pid:none) Arabidopsis thaliana clone 8470 mR... 39 0.057
FJ376037_1(FJ376037|pid:none) Brassica rapa subsp. pekinensis br... 39 0.057
CP000724_3219(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.057
AK227007_1(AK227007|pid:none) Arabidopsis thaliana mRNA for bran... 39 0.057
AP009256_743(AP009256|pid:none) Bifidobacterium adolescentis ATC... 39 0.075
CP000360_712(CP000360|pid:none) Acidobacteria bacterium Ellin345... 38 0.097
CP000792_793(CP000792|pid:none) Campylobacter concisus 13826, co... 38 0.097
CP000033_1258(CP000033|pid:none) Lactobacillus acidophilus NCFM,... 38 0.097
AP008937_347(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 38 0.097
AC159872_31(AC159872|pid:none) Medicago truncatula clone mth2-29... 38 0.13
CP000767_1109(CP000767|pid:none) Campylobacter curvus 525.92, co... 38 0.13
AE016795_973(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 38 0.13
BA000037_3242(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 38 0.13
CP000926_2400(CP000926|pid:none) Pseudomonas putida GB-1, comple... 37 0.17
AE015451_3478(AE015451|pid:none) Pseudomonas putida KT2440 compl... 37 0.17
AC159872_32(AC159872|pid:none) Medicago truncatula clone mth2-29... 37 0.22
AL935259_2(AL935259|pid:none) Lactobacillus plantarum strain WCF... 37 0.22
CU459003_2103(CU459003|pid:none) Magnetospirillum gryphiswaldens... 37 0.22
CP001230_1601(CP001230|pid:none) Persephonella marina EX-H1, com... 37 0.22
CP000431_2939(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 37 0.28
AP009049_3198(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 37 0.28
FM954972_2931(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 37 0.28
BA000016_1520(BA000016|pid:none) Clostridium perfringens str. 13... 36 0.37
CP000388_3990(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 36 0.37
CP000949_2404(CP000949|pid:none) Pseudomonas putida W619, comple... 36 0.48
CP000038_3671(CP000038|pid:none) Shigella sonnei Ss046, complete... 35 0.63
DQ362618_1(DQ362618|pid:none) Shigella flexneri strain 572 IlvE ... 35 0.63
DQ362611_1(DQ362611|pid:none) Shigella dysenteriae strain G1190 ... 35 0.63
CP000243_4237(CP000243|pid:none) Escherichia coli UTI89, complet... 35 0.63
CP000026_3486(CP000026|pid:none) Salmonella enterica subsp. ente... 35 0.63
AM933173_3418(AM933173|pid:none) Salmonella enterica subsp. ente... 35 0.63
AJ749949_251(AJ749949|pid:none) Francisella tularensis subsp. tu... 35 0.63
AE005674_3847(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 35 0.63
CP000266_3464(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 35 0.63
DQ362589_1(DQ362589|pid:none) Shigella boydii strain G1294 IlvE ... 35 0.63
AE017220_3808(AE017220|pid:none) Salmonella enterica subsp. ente... 35 0.63
DQ362591_1(DQ362591|pid:none) Shigella boydii strain G1287 IlvE ... 35 0.63
(P0AB80) RecName: Full=Branched-chain-amino-acid aminotransferas... 35 0.63
A34082(A34082;A05077)branched-chain-amino-acid transaminase (EC ... 35 0.63
DQ362622_1(DQ362622|pid:none) Shigella flexneri strain 577 IlvE ... 35 0.63
DQ362592_1(DQ362592|pid:none) Shigella boydii strain G1226 IlvE ... 35 0.63
CP000608_1509(CP000608|pid:none) Francisella tularensis subsp. t... 35 0.63
CP001173_1360(CP001173|pid:none) Helicobacter pylori G27, comple... 35 0.82
CP000462_4044(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 35 0.82
CP000020_2571(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 35 0.82
CP001083_880(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 35 0.82
CP001139_2573(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 35 0.82
CP000937_766(CP000937|pid:none) Francisella philomiragia subsp. ... 35 1.1
CP000964_5280(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 35 1.1
AP006725_117(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044... 35 1.1
CP000382_1130(CP000382|pid:none) Clostridium novyi NT, complete ... 34 1.4
CP001217_1435(CP001217|pid:none) Helicobacter pylori P12, comple... 34 1.4
CP000826_4741(CP000826|pid:none) Serratia proteamaculans 568, co... 34 1.8
AM233362_131(AM233362|pid:none) Francisella tularensis subsp. ho... 34 1.8
CP000453_173(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1... 34 1.8
CP000909_1405(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 34 1.8
CP001600_77(CP001600|pid:none) Edwardsiella ictaluri 93-146, com... 34 1.8
CP000822_104(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,... 34 1.8
CP001616_3051(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 34 1.8
CP000943_6500(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 33 2.4
AP008937_922(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 33 2.4
BA000031_3060(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 33 2.4
CP000789_366(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 chr... 33 2.4
CP000076_2485(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 33 2.4
CP000804_1504(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 33 2.4
AL646053_715(AL646053|pid:none) Ralstonia solanacearum GMI1000 m... 33 3.1
DQ077553_10(DQ077553|pid:none) Uncultured bacterium MedeBAC35C06... 33 3.1
(Q9M439) RecName: Full=Branched-chain-amino-acid aminotransferas... 33 3.1
CP000721_1037(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 33 3.1
CU468135_186(CU468135|pid:none) Erwinia tasmaniensis strain ET1/... 33 3.1
BX571874_224(BX571874|pid:none) Photorhabdus luminescens subsp. ... 33 3.1
DQ839407_1(DQ839407|pid:none) Cucumis sativus gynoecious line (F... 33 3.1
CP000284_2492(CP000284|pid:none) Methylobacillus flagellatus KT,... 33 4.1
CP000783_3669(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 33 4.1
BX950851_4200(BX950851|pid:none) Erwinia carotovora subsp. atros... 33 4.1
CP001339_2676(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 33 4.1
CU695240_249(CU695240|pid:none) Ralstonia solanacearum strain Mo... 33 4.1
CP001337_1613(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 32 5.3
(Q8L493) RecName: Full=Branched-chain-amino-acid aminotransferas... 32 5.3
CP000233_61(CP000233|pid:none) Lactobacillus salivarius UCC118, ... 32 5.3
AB013396_9(AB013396|pid:none) Arabidopsis thaliana genomic DNA, ... 32 5.3
AE009952_332(AE009952|pid:none) Yersinia pestis KIM, complete ge... 32 7.0
AE001437_1460(AE001437|pid:none) Clostridium acetobutylicum ATCC... 32 7.0
AE017042_3038(AE017042|pid:none) Yersinia pestis biovar Microtus... 32 7.0
AE017282_104(AE017282|pid:none) Methylococcus capsulatus str. Ba... 32 7.0
CP000094_3463(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 32 9.1
AF279106_71(AF279106|pid:none) Uncultured marine gamma proteobac... 32 9.1
CP001189_1855(CP001189|pid:none) Gluconacetobacter diazotrophicu... 32 9.1

>U88029_1(U88029|pid:none) Schizosaccharomyces pombe branched-chain
amino-acids aminotransferase (ECA39) gene, complete cds.
Length = 380

Score = 120 bits (301), Expect = 1e-26
Identities = 68/154 (44%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Frame = +3

Query: 3 GAFKLGSXYAPTIFPQLEAAKKGXXQXLWLL--NDYVTEVGTMXMFVFWNNAQGXKXLIX 176
G +KLG YAP++ PQ EAAKKG Q LWL DY+TEVGTM F W N G K +I
Sbjct: 206 GHYKLGGNYAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMNCFTVWINKNGEKEIIT 265

Query: 177 PPLGDGTILPGVTRDXILKLTQQW---GEFKIXEXNFXMTELAKAIKXXXXXXXXXXXXX 347
PL DG ILPGVTRD IL++ ++ +KI E + M E+A+A K
Sbjct: 266 APL-DGMILPGVTRDSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRLLEVFGAGTA 324

Query: 348 XIVSPIESXSYKGENXXIPIDASLXCGPLTKRIS 449
+VSP+++ +YKG IP+ GP+T IS
Sbjct: 325 ALVSPVKAINYKGTEYEIPMPEGQEAGPITSEIS 358

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 521,430,118
Number of extensions: 6812173
Number of successful extensions: 7412
Number of sequences better than 10.0: 270
Number of HSP's gapped: 7248
Number of HSP's successfully gapped: 270
Length of query: 151
Length of database: 1,051,180,864
Length adjustment: 113
Effective length of query: 38
Effective length of database: 685,449,697
Effective search space: 26047088486
Effective search space used: 26047088486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.85 gvh: 0.53 alm: 0.44 top: 0.47 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U02109-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0