NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13177-1
Contig ID Contig-U13177-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13177-1 (Contig-U13177-1Q) /CSM_Contig/Contig-U13177-1Q.Seq.d
TCCTTGAATGTGTAACAAAGATGTCATCAGTTTCAACCAAAGATTTTGGA
GAAATGAAAGCCCATAGACACAACATTAAATCAATTCTTCATAAAGCAAA
AACAGATATTGGAAATCTTCAAAAGCTTCAAGATTCTTTATCTCAGTATC
AACATCAATTGGAAAAGGCAAATAATGATAAAGAATCATTTAAAAATTAT
ACAACAAAAAATACAATTGAAAAGTATGAATTAAAAGATGCACCATATCA
TAGTACCCTATGTAGTACTTGTGACCATGTTTGTCATAATAAATGTGGCT
TAGAAGAGCTATCAACAAAAGGGGATAATGCATTCATAGGTTGTGTAGCA
ATGAGTGGAACCAATAATTGCAAAATTTGTCCTTCAAAGTGCCTTTACAA
TGTTCATTATCATGGAAGAAAAACAATGGTTAAAGTTAATAAGACAGTTG
AGCAAGAACTCACAGATATGAAGGAAAAGTTTTTAAAAAGCTCTGAACTC
TCTTCCGAATTTTCAGGAAAAATTCTCAATCTTGATTCAGCAAAGAAATT
AGCCAGTGCCACTTTGAATAAAATGACCGATGATATTGTAAAATCTTGTA
AAGAATTGAAAAAAATTTGTAGTGGTTTTAATTTAGTTGATGAACTTCAA
ATTACTTTAAATCAAATGGAAATGGAAGCTAAAAACTCAACTTCATTCGA
TGCCAGAAAATCGGCCGATGAAANATTAGAACCATTAGAGAGAATCTGNN
ATAAATTAAATA
Gap no gap
Contig length 762
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1495800
End point 1495037
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13177
List of clone(s) 

est1=SFD766Z,1,763
Translated Amino Acid sequence 
LECVTKMSSVSTKDFGEMKAHRHNIKSILHKAKTDIGNLQKLQDSLSQYQHQLEKANNDK
ESFKNYTTKNTIEKYELKDAPYHSTLCSTCDHVCHNKCGLEELSTKGDNAFIGCVAMSGT
NNCKICPSKCLYNVHYHGRKTMVKVNKTVEQELTDMKEKFLKSSELSSEFSGKILNLDSA
KKLASATLNKMTDDIVKSCKELKKICSGFNLVDELQITLNQMEMEAKNSTSFDARKSADE
XLEPLERIXXKLN
Translated Amino Acid sequence (All Frames) 
Frame A:
slnv*qrchqfqpkilek*kpidttlnqffikqkqileifksfkilylsininwkrqimi
knhlkiiqqkiqlksmn*kmhhiivpyvvlvtmfviinva*ksyqqkgimhs*vv*q*ve
piiakfvlqsaftmfiimeekqwlklirqlsknsqi*rksf*kalnslpnfqekfsiliq
qrn*pvpl*ik*pmil*nlvkn*kkfvvvli*lmnfkll*ikwkwklktqlhsmpenrpm
kx*nh*resxin*i


Frame B:
p*mcnkdvisfnqrfwrnesp*tqh*inss*sknrywksskasrffisvstsigkgk***
rii*klynkkyn*kv*ikrctis*ypm*yl*pcls**mwlrrainkrg*cihrlcsnewn
q*lqnlsfkvplqcslswkknng*s**ds*arthryegkvfkkl*tlfrifrknsqs*fs
keisqchfe*ndr*yckil*rieknl*wf*fs**tsnyfksngngs*klnfircqkigr*
xirtirenlx*ik


Frame C:
LECVTKMSSVSTKDFGEMKAHRHNIKSILHKAKTDIGNLQKLQDSLSQYQHQLEKANNDK
ESFKNYTTKNTIEKYELKDAPYHSTLCSTCDHVCHNKCGLEELSTKGDNAFIGCVAMSGT
NNCKICPSKCLYNVHYHGRKTMVKVNKTVEQELTDMKEKFLKSSELSSEFSGKILNLDSA
KKLASATLNKMTDDIVKSCKELKKICSGFNLVDELQITLNQMEMEAKNSTSFDARKSADE
XLEPLERIXXKLN
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13177-1 (Contig-U13177-1Q)
/CSM_Contig/Contig-U13177-1Q.Seq.d
         (762 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13177-1 (Contig-U13177-1Q) /CSM_Contig/Conti...  1451  0.0
Contig-U11693-1 (Contig-U11693-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14136-1 (Contig-U14136-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U11124-1 (Contig-U11124-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U09152-1 (Contig-U09152-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U14313-1 (Contig-U14313-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12090-1 (Contig-U12090-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U11103-1 (Contig-U11103-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U09366-1 (Contig-U09366-1Q) /CSM_Contig/Conti...    34  0.21

>Contig-U13177-1 (Contig-U13177-1Q) /CSM_Contig/Contig-U13177-1Q.Seq.d
          Length = 762

 Score = 1451 bits (732), Expect = 0.0
 Identities = 755/762 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttgaatgtgtaacaaagatgtcatcagtttcaaccaaagattttggagaaatgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccttgaatgtgtaacaaagatgtcatcagtttcaaccaaagattttggagaaatgaaag 60

                                                                       
Query: 61  cccatagacacaacattaaatcaattcttcataaagcaaaaacagatattggaaatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cccatagacacaacattaaatcaattcttcataaagcaaaaacagatattggaaatcttc 120

                                                                       
Query: 121 aaaagcttcaagattctttatctcagtatcaacatcaattggaaaaggcaaataatgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaagcttcaagattctttatctcagtatcaacatcaattggaaaaggcaaataatgata 180

                                                                       
Query: 181 aagaatcatttaaaaattatacaacaaaaaatacaattgaaaagtatgaattaaaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaatcatttaaaaattatacaacaaaaaatacaattgaaaagtatgaattaaaagatg 240

                                                                       
Query: 241 caccatatcatagtaccctatgtagtacttgtgaccatgtttgtcataataaatgtggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caccatatcatagtaccctatgtagtacttgtgaccatgtttgtcataataaatgtggct 300

                                                                       
Query: 301 tagaagagctatcaacaaaaggggataatgcattcataggttgtgtagcaatgagtggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagaagagctatcaacaaaaggggataatgcattcataggttgtgtagcaatgagtggaa 360

                                                                       
Query: 361 ccaataattgcaaaatttgtccttcaaagtgcctttacaatgttcattatcatggaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaataattgcaaaatttgtccttcaaagtgcctttacaatgttcattatcatggaagaa 420

                                                                       
Query: 421 aaacaatggttaaagttaataagacagttgagcaagaactcacagatatgaaggaaaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaacaatggttaaagttaataagacagttgagcaagaactcacagatatgaaggaaaagt 480

                                                                       
Query: 481 ttttaaaaagctctgaactctcttccgaattttcaggaaaaattctcaatcttgattcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttaaaaagctctgaactctcttccgaattttcaggaaaaattctcaatcttgattcag 540

                                                                       
Query: 541 caaagaaattagccagtgccactttgaataaaatgaccgatgatattgtaaaatcttgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaagaaattagccagtgccactttgaataaaatgaccgatgatattgtaaaatcttgta 600

                                                                       
Query: 601 aagaattgnnnnnnntttgtagtggttttaatttagttgatgaacttcaaattactttaa 660
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagaattgaaaaaaatttgtagtggttttaatttagttgatgaacttcaaattactttaa 660

                                                                       
Query: 661 atcaaatggaaatggaagctaaaaactcaacttcattcgatgccagaaaatcggccgatg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atcaaatggaaatggaagctaaaaactcaacttcattcgatgccagaaaatcggccgatg 720

                                                     
Query: 721 aaanattagaaccattagagagaatctgnnataaattaaata 762
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaanattagaaccattagagagaatctgnnataaattaaata 762


>Contig-U11693-1 (Contig-U11693-1Q) /CSM_Contig/Contig-U11693-1Q.Seq.d
          Length = 2080

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 577  ccgatgatattgtaaaatc 595
            |||||||||||||||||||
Sbjct: 1651 ccgatgatattgtaaaatc 1633


>Contig-U14136-1 (Contig-U14136-1Q) /CSM_Contig/Contig-U14136-1Q.Seq.d
          Length = 464

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 196 attatacaacaaaaaata 213
           ||||||||||||||||||
Sbjct: 351 attatacaacaaaaaata 334


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,586
Number of Sequences: 6905
Number of extensions: 10586
Number of successful extensions: 1114
Number of sequences better than 10.0: 114
length of query: 762
length of database: 5,674,871
effective HSP length: 16
effective length of query: 746
effective length of database: 5,564,391
effective search space: 4151035686
effective search space used: 4151035686
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 6
Homology vs DNA 
Query= Contig-U13177-1 (Contig-U13177-1Q) /CSM_Contig/Contig-U13177-1Q.Seq.d
         (762 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ400029) Dictyostelium discoideum cDNA clone:dds8d17, 3' e...   763   0.0    3
(BU005049) QGG6P04.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   0.079  2
(AC163857) Bos taurus clone CH240-125L17, WORKING DRAFT SEQU...    36   0.079  5
(AC230686) Bos taurus clone CH240-501M8, WORKING DRAFT SEQUE...    36   0.45   4
(DK278329) Drosophila auraria mRNA, adult full-length cDNA c...    48   0.49   1
(AC006971) Homo sapiens PAC clone RP4-791C19 from 7, complet...    38   0.98   5
(CS452620) Sequence 20 from Patent WO2006119494.                   38   1.2    5
(EI896278) VUH1-77B8TR VUUBBa (VUH1) Vigna unguiculata genom...    36   1.4    2
(EI894225) VUH1-77C13TR VUUBBa (VUH1) Vigna unguiculata geno...    36   1.5    2
(AC100478) Mus musculus clone RP23-140P23, LOW-PASS SEQUENCE...    38   1.7    3
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    42   1.8    13
(EI426920) PV_GBa0017G23.r PV_GBa Phaseolus vulgaris genomic...    46   1.9    1
(CR391939) Zebrafish DNA sequence from clone CH211-269G3 in ...    40   2.3    4
(AC142543) Homo sapiens chromosome 5 clone RP13-530C14, WORK...    38   2.6    5
(AP002894) Homo sapiens genomic DNA, chromosome 18q11.2, clo...    42   3.1    3
(AE017245) Mycoplasma synoviae 53, complete genome.                38   3.8    9
(CB995278) AGENCOURT_13617671 NIH_MGC_148 Homo sapiens cDNA ...    34   4.9    2
(BX248985) Zebrafish DNA sequence from clone CH211-192N18 in...    44   7.6    1
(BV020329) S212P6611FD10.T0 CZECHII/Ei Mus musculus STS geno...    44   7.6    1
(AC166755) Mus musculus BAC clone RP24-220N14 from chromosom...    44   7.6    1
(AC161382) Mus musculus BAC clone RP23-25A17 from chromosome...    44   7.6    1
(AC068665) Mus musculus strain C57BL6/J chromosome 5 clone R...    44   7.6    1
(AC207598) Pan troglodytes BAC clone CH251-404N5 from chromo...    44   7.6    1
(AC190199) Pan troglodytes BAC clone CH251-610M6 from chromo...    44   7.6    1
(AC073346) Homo sapiens BAC clone RP11-736E3 from 7, complet...    44   7.6    1
(AC128424) Rattus norvegicus clone CH230-113H2, *** SEQUENCI...    44   7.6    1
(AC182886) Bos taurus clone CH240-527O10, WORKING DRAFT SEQU...    44   7.6    1
(AZ566515) 222PvE09 Pv MBN #16 (amplified twice) Plasmodium ...    44   7.6    1
(ER944035) CH260-102I03_SP6 CHORI-260 Meleagris gallopavo ge...    44   7.6    1
(ER619642) 1093017385706 Global-Ocean-Sampling_GS-36-01-01-2...    44   7.6    1
(EK480037) 1095469512217 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.6    1
(EK364785) 1095469392131 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK248187) 1095460266947 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK148388) 1095456035738 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK032164) 1092956077092 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EJ692173) 1092956006530 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.6    1
(EJ665283) 1092955038856 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.6    1
(EJ435463) 1093015278429 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.6    1
(CW340888) 104_842_11486035_148_36166_078 Sorghum methylatio...    44   7.6    1
(CW151048) 104_551_11143733_148_36308_019 Sorghum methylatio...    44   7.6    1
(AG778621) Macaca fuscata fuscata DNA, clone: MSB2-257P22_R,...    44   7.6    1
(CG424941) ZMMBBc0044L02r ZMMBBc (EcoRI) Zea mays subsp. may...    44   7.6    1
(ES435832) EST1236038 ESTSYN-L Musa acuminata AAA Group cDNA...    44   7.6    1
(BB591803) Mus musculus 2 cells egg cDNA, RIKEN full-length ...    44   7.6    1
(FK019195) GLND781TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    44   7.6    1
(FC768679) CBBN4577.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   7.6    1
(EW750834) sb_006_07G08_m13reverselong Onychiurus arcticus d...    44   7.6    1
(AE017261) Picrophilus torridus DSM 9790, complete genome.         44   7.6    1
(AC203123) Colobus guereza clone CH272-28H1, WORKING DRAFT S...    40   7.9    4

>(BJ400029) Dictyostelium discoideum cDNA clone:dds8d17, 3' end,
           single read.
          Length = 763

 Score =  763 bits (385), Expect(3) = 0.0
 Identities = 385/385 (100%)
 Strand = Plus / Minus


Query: 224 gtatgaattaaaagatgcaccatatcatagtaccctatgtagtacttgtgaccatgtttg 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtatgaattaaaagatgcaccatatcatagtaccctatgtagtacttgtgaccatgtttg 481


Query: 284 tcataataaatgtggcttagaagagctatcaacaaaaggggataatgcattcataggttg 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcataataaatgtggcttagaagagctatcaacaaaaggggataatgcattcataggttg 421


Query: 344 tgtagcaatgagtggaaccaataattgcaaaatttgtccttcaaagtgcctttacaatgt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtagcaatgagtggaaccaataattgcaaaatttgtccttcaaagtgcctttacaatgt 361


Query: 404 tcattatcatggaagaaaaacaatggttaaagttaataagacagttgagcaagaactcac 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcattatcatggaagaaaaacaatggttaaagttaataagacagttgagcaagaactcac 301


Query: 464 agatatgaaggaaaagtttttaaaaagctctgaactctcttccgaattttcaggaaaaat 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agatatgaaggaaaagtttttaaaaagctctgaactctcttccgaattttcaggaaaaat 241


Query: 524 tctcaatcttgattcagcaaagaaattagccagtgccactttgaataaaatgaccgatga 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctcaatcttgattcagcaaagaaattagccagtgccactttgaataaaatgaccgatga 181


Query: 584 tattgtaaaatcttgtaaagaattg 608
           |||||||||||||||||||||||||
Sbjct: 180 tattgtaaaatcttgtaaagaattg 156

 Score =  321 bits (162), Expect(3) = 0.0
 Identities = 162/162 (100%)
 Strand = Plus / Minus


Query: 1   tccttgaatgtgtaacaaagatgtcatcagtttcaaccaaagattttggagaaatgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tccttgaatgtgtaacaaagatgtcatcagtttcaaccaaagattttggagaaatgaaag 704


Query: 61  cccatagacacaacattaaatcaattcttcataaagcaaaaacagatattggaaatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cccatagacacaacattaaatcaattcttcataaagcaaaaacagatattggaaatcttc 644


Query: 121 aaaagcttcaagattctttatctcagtatcaacatcaattgg 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaaagcttcaagattctttatctcagtatcaacatcaattgg 602

 Score =  274 bits (138), Expect(3) = 0.0
 Identities = 147/147 (100%)
 Strand = Plus / Minus


Query: 616 tttgtagtggttttaatttagttgatgaacttcaaattactttaaatcaaatggaaatgg 675
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tttgtagtggttttaatttagttgatgaacttcaaattactttaaatcaaatggaaatgg 89


Query: 676 aagctaaaaactcaacttcattcgatgccagaaaatcggccgatgaaanattagaaccat 735
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  aagctaaaaactcaacttcattcgatgccagaaaatcggccgatgaaanattagaaccat 29


Query: 736 tagagagaatctgnnataaattaaata 762
           |||||||||||||||||||||||||||
Sbjct: 28  tagagagaatctgnnataaattaaata 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 872,013,183
Number of extensions: 52989805
Number of successful extensions: 4008879
Number of sequences better than 10.0: 50
Length of query: 762
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 738
Effective length of database: 97,308,875,965
Effective search space: 71813950462170
Effective search space used: 71813950462170
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13177-1 (Contig-U13177-1Q) /CSM_Contig/Contig-U13177-1Q.Seq.d
         (762 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL390354_21(AL390354|pid:none) Neurospora crassa DNA linkage gro...    47   9e-04
CR940353_474(CR940353|pid:none) Theileria annulata strain Ankara...    39   0.14
CR925677_106(CR925677|pid:none) Ehrlichia ruminantium str. Garde...    39   0.18
CP000767_1892(CP000767|pid:none) Campylobacter curvus 525.92, co...    37   0.52
BX248583_293(BX248583|pid:none) Blochmannia floridanus complete ...    37   0.68
AE014296_3784(AE014296|pid:none) Drosophila melanogaster chromos...    36   1.2
(Q3YSZ3) RecName: Full=Protein grpE; AltName: Full=HSP-70 cofact...    36   1.5
AE001362_61(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    35   2.0
CP000094_5205(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    35   2.0
AE014185_111(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.0
FN357468_4(FN357468|pid:none) Schistosoma mansoni genome sequenc...    35   2.6
AE014187_477(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.6
AY500368_34(AY500368|pid:none) Dictyota dichotoma mitochondrion,...    35   2.6
AF128810_1(AF128810|pid:none) Oryzias latipes ZPC domain contain...    35   3.4
AF331672_1(AF331672|pid:none) Oryzias latipes ZPC2 gene, partial...    35   3.4
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    34   4.4
AF164678_1(AF164678|pid:none) Homo sapiens FLASH homolog RIP25 (...    34   4.4
AL353692_4(AL353692|pid:none) Human DNA sequence from clone RP11...    34   4.4
DQ987498_1(DQ987498|pid:none) Gibberella zeae RING-12 protein mR...    34   4.4
CP000076_5638(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...    34   4.4
(Q4I7N9) RecName: Full=E3 ubiquitin-protein ligase BRE1;        ...    34   4.4
AB037736_1(AB037736|pid:none) Homo sapiens mRNA for KIAA1315 pro...    34   4.4
AL844507_262(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.4
BC056685_1(BC056685|pid:none) Homo sapiens caspase 8 associated ...    34   4.4
L06303_1(L06303|pid:none) Plasmodium falciparum 8b2 protein, com...    34   4.4
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    34   4.4
(Q9UKL3) RecName: Full=CASP8-associated protein 2; AltName: Full...    34   4.4
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    34   4.4
(A6KXA0) RecName: Full=60 kDa chaperonin; AltName: Full=Protein ...    34   5.7
CP000949_408(CP000949|pid:none) Pseudomonas putida W619, complet...    34   5.7
CP000487_257(CP000487|pid:none) Campylobacter fetus subsp. fetus...    34   5.7
(P40414) RecName: Full=Tropomyosin-2;  &AY558235_1(AY558235|pid:...    34   5.7
CP001069_1142(CP001069|pid:none) Ralstonia pickettii 12J chromos...    33   7.5
CP001336_3678(CP001336|pid:none) Desulfitobacterium hafniense DC...    33   7.5
BC160745_1(BC160745|pid:none) Xenopus laevis hypothetical protei...    33   9.8
CP000356_2445(CP000356|pid:none) Sphingopyxis alaskensis RB2256,...    33   9.8
CR940347_490(CR940347|pid:none) Theileria annulata strain Ankara...    33   9.8
CP001283_1085(CP001283|pid:none) Bacillus cereus AH820, complete...    33   9.8
AC2574(AC2574) hypothetical protein alr9018 [imported] - Nostoc ...    33   9.8
AB190946_1(AB190946|pid:none) Helicobacter pylori cagA gene for ...    33   9.8
AL935261_107(AL935261|pid:none) Lactobacillus plantarum strain W...    33   9.8

>AL390354_21(AL390354|pid:none) Neurospora crassa DNA linkage group II
            BAC contig B24M22.  &T51227(T51227)
          Length = 1270

 Score = 46.6 bits (109), Expect = 9e-04
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
 Frame = +3

Query: 6    ECVTKMSSVSTKDFGEMKAHRHNIKSILHKAKTDIGNLQKLQDSLSQYQHQLEK------ 167
            E + KM+ V T    E+   R  ++    K +   G + K  +       QL+
Sbjct: 919  EMLVKMTPVPTAGSAEVTKKRMQLEE---KCQLAEGKIMKTANDAQLIIAQLKTLALAIG 975

Query: 168  ANNDKESFKNYTTKNTIEKYELKDAPY--HSTLCSTCDHVCHNKCGLEELSTKGDNAFIG 341
            A  D+   + Y     IE ++ +D P   ++TLC+TC++ CH  C     S   D  +
Sbjct: 976  AAPDELIAQKY-----IETFK-RDVPSGKYTTLCTTCNYTCHEIC---NFSNDDDKKY-- 1024

Query: 342  CVAMSGTNNCKICPSKCLYNVHYHGRKTMVKVNKT 446
            C AM+   +C +CP+KC +  H++    +V   KT
Sbjct: 1025 CAAMN-NGDCTMCPNKCNWTKHHNATFIIVAEEKT 1058

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,136,884,936
Number of extensions: 22040737
Number of successful extensions: 66344
Number of sequences better than 10.0: 41
Number of HSP's gapped: 66235
Number of HSP's successfully gapped: 41
Length of query: 254
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 128
Effective length of database: 643,374,430
Effective search space: 82351927040
Effective search space used: 82351927040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.66  gvh: 0.39  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U13177-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0