Contig-U13174-1
Contig ID Contig-U13174-1
Contig update 2002.12.18
Contig sequence
>Contig-U13174-1 (Contig-U13174-1Q) /CSM_Contig/Contig-U13174-1Q.Seq.d
ACTGTTGGCCTACTGGTCTTGTAGAACTCTATCGATGGATGGTTTGGAGG
GTATCGAATCAAGGGAATTTAAAAACTTGAATCTTTCATCATGTGGTTTA
GTCGGTGAATCAATTGCAACATTATTGGTTGCACTATCGAGAAATTCAAA
ATTACATAATCTAACATTAAATTTACAACGTAATGGTTTCGCTCAAAAAA
CAGCACTCATTCTAATTCAATTGCTACCACAATGTGCAAAATCATTCTTG
ACTGGTTTAGATTTATCTTTTAATTCATTCAATGCAAGACAACTTGCTGA
TATAGTTCAGTCGCTTATGGGTACATGTATTGAGAGTTTAGATATTGGTA
ATAACTATTTAGATTCTGATTTGGTTTTAAAAGTTGCAGAATTGGTTAAA
GATAATGGTTTGGTTAAATTAGGAATTGGCCATCAAAGTAAACCATTGTC
ACCTGCATTGCATCCTCTATTATTGGCAGNCGGGTCAAGCAAAACCATGC
AGG

Gap no gap
Contig length 503
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7306678
End point 7307165
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13174
List of clone(s)

est1=SFB741F,1,504
Translated Amino Acid sequence
LLAYWSCRTLSMDGLEGIESREFKNLNLSSCGLVGESIATLLVALSRNSKLHNLTLNLQR
NGFAQKTALILIQLLPQCAKSFLTGLDLSFNSFNARQLADIVQSLMGTCIESLDIGNNYL
DSDLVLKVAELVKDNGLVKLGIGHQSKPLSPALHPLLLAXGSSKTMQ


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvl*nsidgwfggyrikgi*klesfimwfsr*incniigctiekfkit*snikftt
*wfrsknsthsnsiattmckiildwfrfif*fiqckttc*yssvaygymy*efryw**lf
rf*fgfkscrig*r*wfg*irnwpsk*tivtciassiigxrvkqnha


Frame B:
LLAYWSCRTLSMDGLEGIESREFKNLNLSSCGLVGESIATLLVALSRNSKLHNLTLNLQR
NGFAQKTALILIQLLPQCAKSFLTGLDLSFNSFNARQLADIVQSLMGTCIESLDIGNNYL
DSDLVLKVAELVKDNGLVKLGIGHQSKPLSPALHPLLLAXGSSKTMQ


Frame C:
cwptglvelyrwmvwrvsnqgnlkt*ifhhvv*svnqlqhywlhyreiqnyii*h*iynv
mvslkkqhsf*fncyhnvqnhs*lv*iyllihsmqdnlli*fsrlwvhvlrv*ilviti*
iliwf*klqnwlkimvwln*elaikvnhchlhcilyywqxgqakpcr


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13174-1 (Contig-U13174-1Q)
/CSM_Contig/Contig-U13174-1Q.Seq.d
(503 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13174-1 (Contig-U13174-1Q) /CSM_Contig/Conti... 991 0.0
Contig-U12174-1 (Contig-U12174-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U12837-1 (Contig-U12837-1Q) /CSM_Contig/Conti... 36 0.035
Contig-U09625-1 (Contig-U09625-1Q) /CSM_Contig/Conti... 36 0.035
Contig-U00009-1 (Contig-U00009-1Q) /CSM_Contig/Conti... 36 0.035
Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U14654-1 (Contig-U14654-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U14652-1 (Contig-U14652-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U14571-1 (Contig-U14571-1Q) /CSM_Contig/Conti... 34 0.14

>Contig-U13174-1 (Contig-U13174-1Q) /CSM_Contig/Contig-U13174-1Q.Seq.d
Length = 503

Score = 991 bits (500), Expect = 0.0
Identities = 503/503 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtcttgtagaactctatcgatggatggtttggagggtatcgaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtcttgtagaactctatcgatggatggtttggagggtatcgaatc 60


Query: 61 aagggaatttaaaaacttgaatctttcatcatgtggtttagtcggtgaatcaattgcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagggaatttaaaaacttgaatctttcatcatgtggtttagtcggtgaatcaattgcaac 120


Query: 121 attattggttgcactatcgagaaattcaaaattacataatctaacattaaatttacaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attattggttgcactatcgagaaattcaaaattacataatctaacattaaatttacaacg 180


Query: 181 taatggtttcgctcaaaaaacagcactcattctaattcaattgctaccacaatgtgcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatggtttcgctcaaaaaacagcactcattctaattcaattgctaccacaatgtgcaaa 240


Query: 241 atcattcttgactggtttagatttatcttttaattcattcaatgcaagacaacttgctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcattcttgactggtttagatttatcttttaattcattcaatgcaagacaacttgctga 300


Query: 301 tatagttcagtcgcttatgggtacatgtattgagagtttagatattggtaataactattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatagttcagtcgcttatgggtacatgtattgagagtttagatattggtaataactattt 360


Query: 361 agattctgatttggttttaaaagttgcagaattggttaaagataatggtttggttaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agattctgatttggttttaaaagttgcagaattggttaaagataatggtttggttaaatt 420


Query: 421 aggaattggccatcaaagtaaaccattgtcacctgcattgcatcctctattattggcagn 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggaattggccatcaaagtaaaccattgtcacctgcattgcatcctctattattggcagn 480


Query: 481 cgggtcaagcaaaaccatgcagg 503
|||||||||||||||||||||||
Sbjct: 481 cgggtcaagcaaaaccatgcagg 503


>Contig-U12174-1 (Contig-U12174-1Q) /CSM_Contig/Contig-U12174-1Q.Seq.d
Length = 1800

Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtct 19
|||||||||||||||||||
Sbjct: 1 actgttggcctactggtct 19


Score = 28.2 bits (14), Expect = 8.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 113 attgcaacattatt 126
||||||||||||||
Sbjct: 710 attgcaacattatt 723


>Contig-U12837-1 (Contig-U12837-1Q) /CSM_Contig/Contig-U12837-1Q.Seq.d
Length = 206

Score = 36.2 bits (18), Expect = 0.035
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtc 18
||||||||||||||||||
Sbjct: 1 actgttggcctactggtc 18


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6048
Number of Sequences: 6905
Number of extensions: 6048
Number of successful extensions: 976
Number of sequences better than 10.0: 577
length of query: 503
length of database: 5,674,871
effective HSP length: 16
effective length of query: 487
effective length of database: 5,564,391
effective search space: 2709858417
effective search space used: 2709858417
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 6
Homology vs DNA
Query= Contig-U13174-1 (Contig-U13174-1Q) /CSM_Contig/Contig-U13174-1Q.Seq.d
(503 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ387692) Dictyostelium discoideum cDNA clone:dds4b11, 5' e... 991 0.0 1
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 952 0.0 1
(BY992245) Physcomitrella patens subsp. patens cDNA clone: P... 48 0.30 1
(BX248136) Zebrafish DNA sequence from clone DKEY-81B15 in l... 44 0.51 4
(AZ675703) ENTLL67TF Entamoeba histolytica Sheared DNA Entam... 44 0.55 2
(AZ550831) ENTEY13TF Entamoeba histolytica Sheared DNA Entam... 44 0.61 2
(AL513325) Human DNA sequence from clone RP11-332L8 on chrom... 44 4.7 1
(AL356381) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 4.7 1
(AC219368) Bos taurus clone CH240-338H6, WORKING DRAFT SEQUE... 44 4.7 1
(AC168916) Bos taurus clone CH240-234K24, WORKING DRAFT SEQU... 44 4.7 1
(ER849755) POTLQ66TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 4.7 1
(ED683073) GM_WBb0016P03.f GM_WBb Glycine max genomic clone ... 44 4.7 1
(ED672472) GM_WBb0001K02.f GM_WBb Glycine max genomic clone ... 44 4.7 1
(ED321154) AUAC-aaf56h12.g1 Ascaris suum whole genome shotgu... 44 4.7 1
(CW731839) MARC_782652 CHORI-240-102C24 Bos taurus genomic c... 44 4.7 1
(CW731614) MARC_781985 CHORI-240-102C24 Bos taurus genomic c... 44 4.7 1
(CE420031) tigr-gss-dog-17000362731158 Dog Library Canis lup... 44 4.7 1
(EG629460) EMBRYOF088225D16 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr... 44 4.7 1
(EC311545) OVARYF092730P18 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 44 4.7 1
(CJ468522) Macaca fascicularis mRNA, clone: QnpA-18390, 5' e... 44 4.7 1
(CJ465905) Macaca fascicularis mRNA, clone: QnpA-15136, 5' e... 44 4.7 1
(CJ418725) Molgula tectiformis cDNA, larva clone:mtlv031g11,... 44 4.7 1
(CI219703) Oryza sativa Japonica Group cDNA, clone: 039-M077... 44 4.7 1
(CI020793) Oryza sativa Japonica Group cDNA, clone: 007-M069... 44 4.7 1
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 44 4.7 1
(BU496469) PfESToab50f06.y1 Plasmodium falciparum 3D7 asexua... 40 5.2 2
(BD100266) Novel genes cloned in humanneuroblastoma and frag... 40 7.0 2
(BD020328) Novel gene and novel gene fragment cloned in huma... 40 7.0 2
(CJ476391) Macaca fascicularis mRNA, clone: QtrA-10625, 5' e... 38 7.2 2
(CJ442700) Macaca fascicularis mRNA, clone: QccE-20227, 5' e... 38 7.6 2
(CT089634) Sus scrofa genomic clone PigE-167E6, genomic surv... 40 7.8 2
(EJ918871) 1093018590111 Global-Ocean-Sampling_GS-30-02-01-1... 40 9.0 2

>(BJ387692) Dictyostelium discoideum cDNA clone:dds4b11, 5' end,
single read.
Length = 504

Score = 991 bits (500), Expect = 0.0
Identities = 503/503 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtcttgtagaactctatcgatggatggtttggagggtatcgaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtcttgtagaactctatcgatggatggtttggagggtatcgaatc 60


Query: 61 aagggaatttaaaaacttgaatctttcatcatgtggtttagtcggtgaatcaattgcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagggaatttaaaaacttgaatctttcatcatgtggtttagtcggtgaatcaattgcaac 120


Query: 121 attattggttgcactatcgagaaattcaaaattacataatctaacattaaatttacaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attattggttgcactatcgagaaattcaaaattacataatctaacattaaatttacaacg 180


Query: 181 taatggtttcgctcaaaaaacagcactcattctaattcaattgctaccacaatgtgcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatggtttcgctcaaaaaacagcactcattctaattcaattgctaccacaatgtgcaaa 240


Query: 241 atcattcttgactggtttagatttatcttttaattcattcaatgcaagacaacttgctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcattcttgactggtttagatttatcttttaattcattcaatgcaagacaacttgctga 300


Query: 301 tatagttcagtcgcttatgggtacatgtattgagagtttagatattggtaataactattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatagttcagtcgcttatgggtacatgtattgagagtttagatattggtaataactattt 360


Query: 361 agattctgatttggttttaaaagttgcagaattggttaaagataatggtttggttaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agattctgatttggttttaaaagttgcagaattggttaaagataatggtttggttaaatt 420


Query: 421 aggaattggccatcaaagtaaaccattgtcacctgcattgcatcctctattattggcagn 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggaattggccatcaaagtaaaccattgtcacctgcattgcatcctctattattggcagn 480


Query: 481 cgggtcaagcaaaaccatgcagg 503
|||||||||||||||||||||||
Sbjct: 481 cgggtcaagcaaaaccatgcagg 503

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 537,968,544
Number of extensions: 30988256
Number of successful extensions: 2302350
Number of sequences better than 10.0: 32
Length of query: 503
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 480
Effective length of database: 93,106,754,628
Effective search space: 44691242221440
Effective search space used: 44691242221440
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7. 6
Homology vs Protein
Query= Contig-U13174-1 (Contig-U13174-1Q) /CSM_Contig/Contig-U13174-1Q.Seq.d
(503 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q3V3V9) RecName: Full=Leucine-rich repeat-containing protein 16... 46 6e-04
CR954203_353(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 44 0.003
AY329487_1(AY329487|pid:none) Mus musculus strain CBA/J MATER pr... 43 0.005
AY329490_1(AY329490|pid:none) Mus musculus strain A/J MATER prot... 43 0.005
AY196362_1(AY196362|pid:none) Mus musculus strain CBA/J MATER pr... 43 0.005
CP001102_101(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 42 0.006
AY329484_1(AY329484|pid:none) Mus musculus strain SWR/J MATER pr... 41 0.018
BC053384_1(BC053384|pid:none) Mus musculus NLR family, pyrin dom... 41 0.018
(Q6VSG4) RecName: Full=NACHT, LRR and PYD domains-containing pro... 41 0.018
CP001102_78(CP001102|pid:none) Candidatus Amoebophilus asiaticus... 40 0.024
AF528603_1(AF528603|pid:none) Arabidopsis thaliana ecotype Jl-3 ... 40 0.031
AK220210_1(AK220210|pid:none) Mus musculus mRNA for mFLJ00359 pr... 40 0.031
AE017354_1574(AE017354|pid:none) Legionella pneumophila subsp. p... 39 0.053
AF528597_1(AF528597|pid:none) Arabidopsis thaliana ecotype An-2 ... 39 0.091
AM910996_661(AM910996|pid:none) Plasmodium knowlesi strain H chr... 39 0.091
AF177674_1(AF177674|pid:none) Arabidopsis thaliana cultivar Wass... 39 0.091
AC004512_16(AC004512|pid:none) Arabidopsis thaliana chromosome 1... 38 0.16
AF528591_1(AF528591|pid:none) Arabidopsis thaliana ecotype Colum... 38 0.16
CP000675_1679(CP000675|pid:none) Legionella pneumophila str. Cor... 37 0.20
(Q5XHY1) RecName: Full=Leucine-rich repeat-containing protein 16B; 37 0.20
AY056236_1(AY056236|pid:none) Arabidopsis thaliana unknown prote... 37 0.20
(Q3UFQ8) RecName: Full=Leucine-rich repeat-containing protein 16... 37 0.20
CR628336_1570(CR628336|pid:none) Legionella pneumophila str. Par... 37 0.26
AK074167_1(AK074167|pid:none) Homo sapiens mRNA for FLJ00240 pro... 37 0.26
BT052396_1(BT052396|pid:none) Medicago truncatula clone MTYFD_FE... 37 0.26
AM494972_448(AM494972|pid:none) Leishmania braziliensis chromoso... 36 0.45
CP001102_1274(CP001102|pid:none) Candidatus Amoebophilus asiatic... 36 0.45
AF501292_1(AF501292|pid:none) Homo sapiens CARD15-like protein m... 36 0.45
AF111169_4(AF111169|pid:none) Homo sapiens chromosome 14 BAC con... 36 0.59
AF528680_1(AF528680|pid:none) Arabidopsis lyrata CLAVATA2 (CLV2)... 35 0.77
Z75539_5(Z75539|pid:none) Caenorhabditis elegans Cosmid F28C1, c... 35 1.0
C89243(C89243) protein F28C1.3 [imported] - Caenorhabditis elega... 35 1.0
AC124218_15(AC124218|pid:none) Medicago truncatula clone mth2-30... 35 1.3
AP004553_15(AP004553|pid:none) Oryza sativa Japonica Group genom... 34 1.7
(Q86UT6) RecName: Full=NLR family member X1; AltName: Full=Nucle... 34 2.2
AM494968_146(AM494968|pid:none) Leishmania braziliensis chromoso... 34 2.2
CT005272_438(CT005272|pid:none) Leishmania major strain Friedlin... 33 2.9
CP000123_625(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 33 2.9
(Q66X22) RecName: Full=NACHT, LRR and PYD domains-containing pro... 33 2.9
(Q9LJF3) RecName: Full=Serine/threonine-protein kinase BRI1-like... 33 3.8
CP000393_571(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 33 3.8
AK125722_1(AK125722|pid:none) Homo sapiens cDNA FLJ43734 fis, cl... 33 3.8
AM502249_160(AM502249|pid:none) Leishmania infantum chromosome 31. 33 5.0
CU928168_438(CU928168|pid:none) Kluyveromyces thermotolerans str... 33 5.0
DQ228920_1(DQ228920|pid:none) Xenopus laevis S-phase kinase-asso... 32 6.5
AB018110_1(AB018110|pid:none) Arabidopsis thaliana genomic DNA, ... 32 6.5
BC141249_1(BC141249|pid:none) Mus musculus NLR family, pyrin dom... 32 6.5
AM453162_2(AM453162|pid:none) Vitis vinifera contig VV78X048857.... 32 6.5
AY534123_7(AY534123|pid:none) Aegilops tauschii transposons Casp... 32 6.5
BX088593_3(BX088593|pid:none) Zebrafish DNA sequence from clone ... 32 6.5
AK095247_1(AK095247|pid:none) Homo sapiens cDNA FLJ37928 fis, cl... 32 8.5
AP008208_1852(AP008208|pid:none) Oryza sativa (japonica cultivar... 32 8.5
CT005271_346(CT005271|pid:none) Leishmania major strain Friedlin... 32 8.5
BC013199_1(BC013199|pid:none) Homo sapiens NLR family member X1,... 32 8.5
AK025131_1(AK025131|pid:none) Homo sapiens cDNA: FLJ21478 fis, c... 32 8.5
AK242225_1(AK242225|pid:none) Oryza sativa Japonica Group cDNA, ... 32 8.5
(P40482) RecName: Full=Protein transport protein SEC24; AltName:... 32 8.5
CP000076_130(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 32 8.5
CP000685_1182(CP000685|pid:none) Flavobacterium johnsoniae UW101... 32 8.5
AF328862_9(AF328862|pid:none) Geobacillus stearothermophilus str... 32 8.5
CP000721_3719(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 32 8.5

>(Q3V3V9) RecName: Full=Leucine-rich repeat-containing protein 16C;
AltName: Full=RGD, leucine-rich repeat, tropomodulin and
proline-rich containing protein;
Length = 1296

Score = 45.8 bits (107), Expect = 6e-04
Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Frame = +2

Query: 59 SREFKNLNLSSCGLVGESIATLLVALSRNSKLHNLTLNLQRNGFAQKTALILIQLLPQCA 238
+R ++L L+ C L E++ LL L+ N+++H+L L+L A ++ L+ C
Sbjct: 395 TRMLRHLGLAGCKLPPEALRALLEGLALNTQIHDLHLDLSACELRSVGAQVIQDLV--CD 452

Query: 239 KSFLTGLDLSFNSFNARQLADIVQSLMGTCIESLDIGNNY-------LDSDLVLKVAELV 397
L+ LDLS N F + + ++ ++ + +G N+ LD D++ ++A+L+
Sbjct: 453 AGALSSLDLSDNGFGSDMVTLVLAIGRSRSLKHVALGRNFNVRCKETLD-DVLHRIAQLM 511

Query: 398 KDN 406
+D+
Sbjct: 512 QDD 514

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 809,609,135
Number of extensions: 15335590
Number of successful extensions: 33068
Number of sequences better than 10.0: 61
Number of HSP's gapped: 33033
Number of HSP's successfully gapped: 77
Length of query: 167
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 48
Effective length of database: 666,030,343
Effective search space: 31969456464
Effective search space used: 31969456464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.70 gvh: 0.52 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U13174-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0