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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13150-1
Contig ID Contig-U13150-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13150-1 (Contig-U13150-1Q) /CSM_Contig/Contig-U13150-1Q.Seq.d
NNNNNNNNNNGGTCCTAGAATTACTTTTCATCATATAGATTGTCCACTAT
GTAAGAAACAAATGAAATCTCATCCTGCAATTAATCATATTTTAGAACCA
ATCTTAAAGAATAAAGCAATCATTCAATCAAAAGCAATGGAAAGATTATC
ATATGAAGGTTTAGCAAAATGTAAAGAGATTCAAGATAAAAACTCAAAGT
GGTATCAAGATCCTGAAAATTACTCAATGGATAGATATGTGTACTATAGT
TGCTTTAAATGTAAAGGTTTTTATTTTGCTGGTCAAGCACGTTGTGATGA
AGGTGTAGAAGGTGGTTACAAAGATGAAGACTTAATTTGTGGTTCTTGTA
GGGGAAGTGATGGAAAAGAATGTAAAGTACATGGTTGGGACTATATCATA
TGGAAATGTCAGTTTTGTTGTTCAATAGCTCAATGGTATTGCTGGAGCAA
GACGCACTTCTGTTCCCAATGCCACGCTATTCAAAATGGCGGAAAGTACC
TCAACAAAATACCCAAAACCGAAATCCCTCGATGTGAAGGTCCTGATAAA
TGTCCCCTTAAGGTTGATCATCCTCATGTCGAAGAATTTATTTTAGGTTG
TACTCTTTGTAAAAATTTAAAAGAATTTTAATCAAATCAATCAAGACCAC
TTTAATCCTTTGTAAATAATATCGTTTTCAAGAACAAAAAAGTAAAAAAC
TTTGTAAATAAATA
Gap no gap
Contig length 714
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2828287
End point 2827630
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13150
List of clone(s) 

est1=CHR274Z,1,705
Translated Amino Acid sequence 
XXXGPRITFHHIDCPLCKKQMKSHPAINHILEPILKNKAIIQSKAMERLSYEGLAKCKEI
QDKNSKWYQDPENYSMDRYVYYSCFKCKGFYFAGQARCDEGVEGGYKDEDLICGSCRGSD
GKECKVHGWDYIIWKCQFCCSIAQWYCWSKTHFCSQCHAIQNGGKYLNKIPKTEIPRCEG
PDKCPLKVDHPHVEEFILGCTLCKNLKEF*snqsrpl*sfvnnivfknkkvknfvnk
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxs*nyfssyrlstm*etneisscn*syfrtnlke*snhsiksngkiii*rfskm*rd
sr*klkvvsrs*kllng*icvl*ll*m*rflfcwsstl**rcrrwlqr*rlnlwfl*gk*
wkrm*stwlglyhmemsvllfnssmvlleqdallfpmpryskwrkvpqqntqnrnpsm*r
s**msp*g*ssscrriyfrlysl*kfkriliksikttlilck*yrfqeqkskklck*i


Frame B:
XXXGPRITFHHIDCPLCKKQMKSHPAINHILEPILKNKAIIQSKAMERLSYEGLAKCKEI
QDKNSKWYQDPENYSMDRYVYYSCFKCKGFYFAGQARCDEGVEGGYKDEDLICGSCRGSD
GKECKVHGWDYIIWKCQFCCSIAQWYCWSKTHFCSQCHAIQNGGKYLNKIPKTEIPRCEG
PDKCPLKVDHPHVEEFILGCTLCKNLKEF*snqsrpl*sfvnnivfknkkvknfvnk


Frame C:
xxxvlellfii*ivhyvrnk*nlilqliif*nqs*rikqsfnqkqwkdyhmkv*qnvkrf
kiktqsgikilkitqwidmctivalnvkvfillvkhvvmkv*kvvtkmkt*fvvlvgevm
eknvkymvgtisygnvsfvvq*lngiagarrtsvpnatlfkmaeststkypkpksldvkv
linvplrliilmsknlf*vvlfvki*knfnqinqdhfnpl*iisfsrtkk*ktl*in
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13150-1 (Contig-U13150-1Q)
/CSM_Contig/Contig-U13150-1Q.Seq.d
         (714 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13150-1 (Contig-U13150-1Q) /CSM_Contig/Conti...  1338  0.0
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14471-1 (Contig-U14471-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U13724-1 (Contig-U13724-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U09382-1 (Contig-U09382-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U09303-1 (Contig-U09303-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U13150-1 (Contig-U13150-1Q) /CSM_Contig/Contig-U13150-1Q.Seq.d
          Length = 714

 Score = 1338 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggtcctagaattacttttcatcatatagattgtccactatgtaagaaacaaatgaaatct 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  ggtcctagaattacttttcatcatatagattgtccactatgtaagaaacaaatgaaatct 70

                                                                       
Query: 71  catcctgcaattaatcatattttagaaccaatcttaaagaataaagcaatcattcaatca 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  catcctgcaattaatcatattttagaaccaatcttaaagaataaagcaatcattcaatca 130

                                                                       
Query: 131 aaagcaatggaaagattatcatatgaaggtttagcaaaatgtaaagagattcaagataaa 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaagcaatggaaagattatcatatgaaggtttagcaaaatgtaaagagattcaagataaa 190

                                                                       
Query: 191 aactcaaagtggtatcaagatcctgaaaattactcaatggatagatatgtgtactatagt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aactcaaagtggtatcaagatcctgaaaattactcaatggatagatatgtgtactatagt 250

                                                                       
Query: 251 tgctttaaatgtaaaggtttttattttgctggtcaagcacgttgtgatgaaggtgtagaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgctttaaatgtaaaggtttttattttgctggtcaagcacgttgtgatgaaggtgtagaa 310

                                                                       
Query: 311 ggtggttacaaagatgaagacttaatttgtggttcttgtaggggaagtgatggaaaagaa 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggtggttacaaagatgaagacttaatttgtggttcttgtaggggaagtgatggaaaagaa 370

                                                                       
Query: 371 tgtaaagtacatggttgggactatatcatatggaaatgtcagttttgttgttcaatagct 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtaaagtacatggttgggactatatcatatggaaatgtcagttttgttgttcaatagct 430

                                                                       
Query: 431 caatggtattgctggagcaagacgcacttctgttcccaatgccacgctattcaaaatggc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caatggtattgctggagcaagacgcacttctgttcccaatgccacgctattcaaaatggc 490

                                                                       
Query: 491 ggaaagtacctcaacaaaatacccaaaaccgaaatccctcgatgtgaaggtcctgataaa 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaaagtacctcaacaaaatacccaaaaccgaaatccctcgatgtgaaggtcctgataaa 550

                                                                       
Query: 551 tgtccccttaaggttgatcatcctcatgtcgaagaatttattttaggttgtactctttgt 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgtccccttaaggttgatcatcctcatgtcgaagaatttattttaggttgtactctttgt 610

                                                                       
Query: 611 aaaaatttaaaagaattttaatcaaatcaatcaagaccactttaatcctttgtaaataat 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaaaatttaaaagaattttaatcaaatcaatcaagaccactttaatcctttgtaaataat 670

                          
Query: 671 atcgttttcaagaac 685
           |||||||||||||||
Sbjct: 671 atcgttttcaagaac 685


 Score = 30.2 bits (15), Expect = 3.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 700 ctttgtaaataaata 714
           |||||||||||||||
Sbjct: 700 ctttgtaaataaata 714


>Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Contig-U11391-1Q.Seq.d
          Length = 2461

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 654  aatcctttgtaaataatatcgtt 676
            |||||||| ||||||||||||||
Sbjct: 1265 aatcctttttaaataatatcgtt 1243


>Contig-U14471-1 (Contig-U14471-1Q) /CSM_Contig/Contig-U14471-1Q.Seq.d
          Length = 863

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 607 ttgtaaaaatttaaaag 623
           |||||||||||||||||
Sbjct: 399 ttgtaaaaatttaaaag 383


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8054
Number of Sequences: 6905
Number of extensions: 8054
Number of successful extensions: 814
Number of sequences better than 10.0: 68
length of query: 714
length of database: 5,674,871
effective HSP length: 16
effective length of query: 698
effective length of database: 5,564,391
effective search space: 3883944918
effective search space used: 3883944918
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 6
Homology vs DNA 
Query= Contig-U13150-1 (Contig-U13150-1Q) /CSM_Contig/Contig-U13150-1Q.Seq.d
         (714 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ385975) Dictyostelium discoideum cDNA clone:ddc56c20, 3' ...  1334   0.0    2
(AC121638) Rattus norvegicus clone CH230-383J4, *** SEQUENCI...    50   0.12   1
(EJ525484) 1092955183309 Global-Ocean-Sampling_GS-29-01-01-1...    50   0.12   1
(BV492818) S221P6023RB7.T0 Yvonne Pan troglodytes troglodyte...    38   0.26   2
(BV476490) G591P634021FD12.T0 Clint Pan troglodytes verus ST...    38   0.26   2
(ER549008) 1093016205763 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.33   2
(AC090651) Homo sapiens chromosome 15 clone RP11-344A16 map ...    48   0.45   1
(AC023907) Homo sapiens chromosome 15 clone RP11-100A21 map ...    48   0.45   1
(ER582727) 1093015849816 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.45   1
(EK075221) 1092961026179 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.45   1
(EK022129) 1092955339620 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.45   1
(EJ432989) 1093015266047 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.45   1
(EK519569) 1095515514277 Global-Ocean-Sampling_GS-32-01-01-1...    34   1.2    2
(CR559930) Zebrafish DNA sequence from clone CH211-186E20 in...    46   1.8    1
(AL844899) Zebrafish DNA sequence from clone CH211-287K8 in ...    46   1.8    1
(BX927170) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(BX901915) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(AC211519) Zea mays chromosome 1 clone ZMMBBb-326L18; ZMMBBb...    46   1.8    1
(EI846658) CAH1-1O23TV CAA1Ba Cicer arietinum genomic clone ...    46   1.8    1
(DE646097) Bombyx mori genomic DNA, Fosmid clone:GBMFno396_k...    46   1.8    1
(AC178720) Strongylocentrotus purpuratus clone R3-12N10, WOR...    32   3.3    2
(CU041312) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.4    2
(CU582815) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.5    2
(AC201142) Strongylocentrotus purpuratus clone R3-14D11, WOR...    32   3.5    2
(AC201632) Strongylocentrotus purpuratus clone R3-14D12, WOR...    32   3.6    2
(AJ861907) Brassica rapa subsp. pekinensis GSS, clone KBrH05...    32   4.5    2
(FD482353) NADI-aaa33e03.g1 Rhodnius_prolixus_EST_NADI_5th_i...    32   4.7    2
(FD481394) NADI-aaa33e03.b1 Rhodnius_prolixus_EST_NADI_5th_i...    32   4.7    2
(AC136258) Rattus norvegicus clone CH230-409P9, *** SEQUENCI...    42   6.0    3
(CR792451) Zebrafish DNA sequence from clone CH211-153G16 in...    44   7.1    1
(CR354589) Zebrafish DNA sequence from clone CH211-93L13 in ...    44   7.1    1
(AC168883) Mus musculus 10 BAC RP23-406F5 (Roswell Park Canc...    44   7.1    1
(AC158621) Mus musculus 10 BAC RP23-294J10 (Roswell Park Can...    44   7.1    1
(AC116782) Mus musculus chromosome 5, clone RP24-145A24, com...    44   7.1    1
(CR936323) Medicago truncatula chromosome 5 clone mth2-155c8...    44   7.1    1
(EU616924) Sternopriscus multimaculatus isolate ABTC78752-3 ...    44   7.1    1
(EF056669) Celina sp. 5 IR-2007 16S ribosomal RNA gene, part...    44   7.1    1
(AJ850423) Celina sp. BMNH 681533 partial 16S rRNA gene.           44   7.1    1
(AJ850422) Celina sp. BMNH 681531 partial 16S rRNA gene.           44   7.1    1
(AC015921) Homo sapiens chromosome 17, clone CTD-3060P21, co...    44   7.1    1
(CU856254) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.1    1
(CU856229) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(AC036198) Homo sapiens chromosome 2 clone RP11-192D5 map 2,...    44   7.1    1
(AC213901) Macaca mulatta chromosome UNKNOWN clone CH250-175...    44   7.1    1
(AC184639) Strongylocentrotus purpuratus clone R3-4015O2, WO...    44   7.1    1
(FH454253) CHO_OF4730xa13r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.1    1
(FH407215) CHO_OF4845xi24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.1    1
(FH366389) CHO_OF4497xj01r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.1    1
(FH220622) CHO_OF3099xe20r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   7.1    1
(FH102642) CHO_OF3101xe20r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   7.1    1
(ET905932) CHO_OF360xh01r2.ab1 CHO_OF Nicotiana tabacum geno...    44   7.1    1
(ET873735) CHO_OF265xd01r1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.1    1
(ED884317) OA_CBa0039F21.r OA_CBa Oryza australiensis genomi...    44   7.1    1
(ED693147) GM_WBb0031E12.r GM_WBb Glycine max genomic clone ...    44   7.1    1
(ED051142) AUAC-aap85b08.g1 Ascaris suum whole genome shotgu...    44   7.1    1
(CZ943225) 314118 Tomato EcoRI BAC Library Solanum lycopersi...    44   7.1    1
(CZ501710) GMW2-31E12a.g1 GMW2 Glycine max genomic, genomic ...    44   7.1    1
(CT804271) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   7.1    1
(EY355015) CAWZ3578.rev CAWZ Helobdella robusta Primary Late...    44   7.1    1
(AC016577) Homo sapiens chromosome 5 clone CTB-69E10, comple...    38   7.3    3
(CU466431) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   8.6    5
(AA892902) EST196705 Normalized rat kidney, Bento Soares Rat...    40   9.0    2
(AC176006) Strongylocentrotus purpuratus clone R3-3028E15, W...    40   9.2    5
(AC167148) Bos taurus clone CH240-188M12, WORKING DRAFT SEQU...    38   9.7    4

>(BJ385975) Dictyostelium discoideum cDNA clone:ddc56c20, 3' end,
           single read.
          Length = 705

 Score = 1334 bits (673), Expect(2) = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Minus


Query: 13  tcctagaattacttttcatcatatagattgtccactatgtaagaaacaaatgaaatctca 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcctagaattacttttcatcatatagattgtccactatgtaagaaacaaatgaaatctca 644


Query: 73  tcctgcaattaatcatattttagaaccaatcttaaagaataaagcaatcattcaatcaaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcctgcaattaatcatattttagaaccaatcttaaagaataaagcaatcattcaatcaaa 584


Query: 133 agcaatggaaagattatcatatgaaggtttagcaaaatgtaaagagattcaagataaaaa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agcaatggaaagattatcatatgaaggtttagcaaaatgtaaagagattcaagataaaaa 524


Query: 193 ctcaaagtggtatcaagatcctgaaaattactcaatggatagatatgtgtactatagttg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctcaaagtggtatcaagatcctgaaaattactcaatggatagatatgtgtactatagttg 464


Query: 253 ctttaaatgtaaaggtttttattttgctggtcaagcacgttgtgatgaaggtgtagaagg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctttaaatgtaaaggtttttattttgctggtcaagcacgttgtgatgaaggtgtagaagg 404


Query: 313 tggttacaaagatgaagacttaatttgtggttcttgtaggggaagtgatggaaaagaatg 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tggttacaaagatgaagacttaatttgtggttcttgtaggggaagtgatggaaaagaatg 344


Query: 373 taaagtacatggttgggactatatcatatggaaatgtcagttttgttgttcaatagctca 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taaagtacatggttgggactatatcatatggaaatgtcagttttgttgttcaatagctca 284


Query: 433 atggtattgctggagcaagacgcacttctgttcccaatgccacgctattcaaaatggcgg 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atggtattgctggagcaagacgcacttctgttcccaatgccacgctattcaaaatggcgg 224


Query: 493 aaagtacctcaacaaaatacccaaaaccgaaatccctcgatgtgaaggtcctgataaatg 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aaagtacctcaacaaaatacccaaaaccgaaatccctcgatgtgaaggtcctgataaatg 164


Query: 553 tccccttaaggttgatcatcctcatgtcgaagaatttattttaggttgtactctttgtaa 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tccccttaaggttgatcatcctcatgtcgaagaatttattttaggttgtactctttgtaa 104


Query: 613 aaatttaaaagaattttaatcaaatcaatcaagaccactttaatcctttgtaaataatat 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 aaatttaaaagaattttaatcaaatcaatcaagaccactttaatcctttgtaaataatat 44


Query: 673 cgttttcaagaac 685
           |||||||||||||
Sbjct: 43  cgttttcaagaac 31

 Score = 30.2 bits (15), Expect(2) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 700 ctttgtaaataaata 714
           |||||||||||||||
Sbjct: 16  ctttgtaaataaata 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 870,980,882
Number of extensions: 54899504
Number of successful extensions: 4304190
Number of sequences better than 10.0: 64
Length of query: 714
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 690
Effective length of database: 97,308,875,965
Effective search space: 67143124415850
Effective search space used: 67143124415850
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13150-1 (Contig-U13150-1Q) /CSM_Contig/Contig-U13150-1Q.Seq.d
         (714 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB172863_1(AB172863|pid:none) Macaca fascicularis brain cDNA clo...   184   2e-45
(O75592) RecName: Full=Probable E3 ubiquitin-protein ligase MYCB...   184   2e-45
AF075587_1(AF075587|pid:none) Homo sapiens protein associated wi...   184   2e-45
AL359257_2(AL359257|pid:none) Human DNA sequence from clone RP11...   184   2e-45
BC037971_1(BC037971|pid:none) Homo sapiens MYC binding protein 2...   184   2e-45
AY325887_1(AY325887|pid:none) Mus musculus highwire (Phr1) mRNA,...   184   3e-45
AB172733_1(AB172733|pid:none) Macaca fascicularis brain cDNA clo...   182   1e-44
BC059257_1(BC059257|pid:none) Mus musculus MYC binding protein 2...   181   2e-44
AF083244_1(AF083244|pid:none) Homo sapiens HSPC026 mRNA, complet...   180   3e-44
AY113376_1(AY113376|pid:none) Drosophila melanogaster LP10764 fu...   174   2e-42
(Q9NB71) RecName: Full=E3 ubiquitin-protein ligase highwire;    ...   174   2e-42
AF262977_1(AF262977|pid:none) Drosophila melanogaster highwire (...   174   2e-42
(Q17551) RecName: Full=E3 ubiquitin-protein ligase rpm-1;       ...   174   2e-42
CP001327_118(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   101   3e-20
AY973969_1(AY973969|pid:none) Leishmania major excreted/secreted...    65   2e-09
AM494961_8(AM494961|pid:none) Leishmania braziliensis chromosome...    64   5e-09
AF003521_1(AF003521|pid:none) Homo sapiens Jagged 2 mRNA, comple...    36   1.0
AF029778_1(AF029778|pid:none) Homo sapiens Jagged2 (JAG2) mRNA, ...    36   1.0
AF029779_1(AF029779|pid:none) Homo sapiens hJAG2.del-E6 (JAG2) m...    36   1.0
AF020201_1(AF020201|pid:none) Homo sapiens Jagged 2 mRNA, comple...    36   1.0
Y14330_1(Y14330|pid:none) Homo sapiens partial mRNA for jagged2 ...    36   1.0
BC018217_1(BC018217|pid:none) Mus musculus Scm-like with four mb...    35   2.3
BT026200_1(BT026200|pid:none) Bos taurus Scm-like with four mbt ...    35   2.3
AX405903_1(AX405903|pid:none) Sequence 318 from Patent WO0222660.      35   2.3
AK154826_1(AK154826|pid:none) Mus musculus NOD-derived CD11c +ve...    35   2.3
AL080140_1(AL080140|pid:none) Homo sapiens mRNA; cDNA DKFZp434L2...    35   2.3
(Q9JMD1) RecName: Full=Scm-like with four MBT domains protein 1;...    35   2.3
AM418386_1(AM418386|pid:none) Oncorhynchus mykiss mRNA for CD18 ...    35   2.3
AB032164_1(AB032164|pid:none) Rattus norvegicus Sfmbt mRNA for p...    35   2.3
BC036972_1(BC036972|pid:none) Mus musculus Scm-like with four mb...    35   2.3
(Q9JMD2) RecName: Full=Scm-like with four MBT domains protein 1;...    35   2.3
BT056486_1(BT056486|pid:none) Salmo salar clone ssal-rgb2-624-31...    35   3.0
BT049822_1(BT049822|pid:none) Salmo salar clone ssal-rgb2-509-14...    35   3.0
BC118057_1(BC118057|pid:none) Mus musculus delta-like 2 homolog ...    34   3.9
EU553919_1(EU553919|pid:none) Bison bison CD18 (CD18) mRNA, comp...    34   3.9
BC169084_1(BC169084|pid:none) Rattus norvegicus delta-like 2 hom...    34   3.9
(P32592) RecName: Full=Integrin beta-2; AltName: Full=Cell surfa...    34   3.9
AY842449_1(AY842449|pid:none) Bubalus bubalis integrin beta-2 (I...    34   3.9
U91851_1(U91851|pid:none) Gallus gallus serrate-2 mRNA, partial ...    34   5.1
D87558_1(D87558|pid:none) Gallus gallus mRNA for C-Serrate-2, pa...    34   5.1
(Q6UY11) RecName: Full=Protein delta homolog 2;          Short=D...    34   5.1
(P97607) RecName: Full=Protein jagged-2;          Short=Jagged2;...    34   5.1
AL359813_9(AL359813|pid:none) Human DNA sequence from clone RP5-...    34   5.1
BX004766_1(BX004766|pid:none) Zebrafish DNA sequence from clone ...    33   6.6
BC163889_1(BC163889|pid:none) Danio rerio jagged 2, mRNA (cDNA c...    33   6.6
AF229450_1(AF229450|pid:none) Danio rerio jagged2 (jag2) mRNA, c...    33   6.6
AF090432_1(AF090432|pid:none) Danio rerio serrateB mRNA, complet...    33   6.6
AK010326_1(AK010326|pid:none) Mus musculus ES cells cDNA, RIKEN ...    33   8.7
AE009951_1507(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    33   8.7
AB013074_1(AB013074|pid:none) Cyprinus carpio mRNA for integrin ...    33   8.7
AF319949_1(AF319949|pid:none) Mus musculus MMS19 mRNA, complete ...    33   8.7
BX324233_6(BX324233|pid:none) Zebrafish DNA sequence from clone ...    33   8.7
(Q9D071) RecName: Full=MMS19 nucleotide excision repair protein ...    33   8.7

>AB172863_1(AB172863|pid:none) Macaca fascicularis brain cDNA clone:
           QflA-19908, similar to human MYC binding protein 2
           (MYCBP2), mRNA, RefSeq: NM_015057.1.
          Length = 352

 Score =  184 bits (467), Expect = 2e-45
 Identities = 92/218 (42%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
 Frame = +2

Query: 11  GPRITFHHIDCPLCKKQMKSHPAINHILEPILKNKAIIQSKAMERLSYEGLAKCKEIQDK 190
           GPRITF  I CP+CK ++ +H  +  +L+PI +    ++ KA+ RL YEGL K + I
Sbjct: 139 GPRITFGFISCPICKNKI-NHIVLKDLLDPIKELYEDVRRKALMRLEYEGLHKSEAITTP 197

Query: 191 NSKWYQDPENYSMDRYVYYSCFKCKGFYFAGQARCD--EGVEGGYKDEDLICGSCRG-SD 361
             ++Y DP  Y+M+RY YY C+KC+  YF G+ARCD   G    Y   +LICG+C   S
Sbjct: 198 GVRFYNDPAGYAMNRYAYYVCYKCRKAYFGGEARCDAEAGQGDDYDPRELICGACSDVSR 257

Query: 362 GKECKVHGWDYIIWKCQFCCSIAQWYCWSKTHFCSQCHAIQNGGKYLNKIPKTEIPRC-E 538
            + C  HG D++ +KC++CCS+A ++C+  THFC+ CH   +  + +  IPK E+P C
Sbjct: 258 AQMCPKHGTDFLEYKCRYCCSVAVFFCFGTTHFCNACH---DDFQRMTSIPKEELPHCPA 314

Query: 539 GP-------DKCPLKVDHPHV-EEFILGCTLCKNLKEF 628
           GP        +CPL V HP   EEF LGC +C+N   F
Sbjct: 315 GPKGKQLEGTECPLHVVHPPTGEEFALGCGVCRNAHTF 352

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,103,052,812
Number of extensions: 21825579
Number of successful extensions: 51122
Number of sequences better than 10.0: 53
Number of HSP's gapped: 50983
Number of HSP's successfully gapped: 53
Length of query: 238
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 113
Effective length of database: 646,610,989
Effective search space: 73067041757
Effective search space used: 73067041757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.63  gvh: 0.31  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	 12.0 %: mitochondrial

>> prediction for Contig-U13150-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0