Contig-U13126-1 |
Contig ID |
Contig-U13126-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
417 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
3568177 |
End point |
3567821 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
3 |
Number of EST |
4 |
Link to clone list |
U13126 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 6 |
Homology vs DNA |
Query= Contig-U13126-1 (Contig-U13126-1Q) /CSM_Contig/Contig-U13126-1Q.Seq.d (417 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ370604) Dictyostelium discoideum cDNA clone:ddc54p18, 5' ... 704 0.0 1 (BJ363481) Dictyostelium discoideum cDNA clone:ddc26m20, 5' ... 692 0.0 1 (BJ378052) Dictyostelium discoideum cDNA clone:ddc26m20, 3' ... 668 0.0 1 (BJ370286) Dictyostelium discoideum cDNA clone:ddc53h16, 5' ... 86 1e-12 1 (AC025835) Homo sapiens chromosome 18, clone RP11-185H18, co... 42 0.027 4 (CJ365128) Molgula tectiformis cDNA, cleaving embryo clone:m... 50 0.063 1 (BW518158) Ciona savignyi cDNA, clone:csga014m04, 5'end, sin... 50 0.063 1 (AY689436) Deerpox virus W-848-83, complete genome. 40 0.066 5 (AY689437) Deerpox virus W-1170-84, complete genome. 40 0.072 5 (CR762385) Zebrafish DNA sequence from clone DKEY-245L10 in ... 36 0.13 5 (BX855621) Zebrafish DNA sequence from clone CH211-225C13. 36 0.15 2 (CR548635) Zebrafish DNA sequence from clone DKEY-67C22 in l... 36 0.15 2 (AC187128) Callithrix jacchus chromosome UNK clone CH259-94H... 40 0.17 6 (AC108090) Homo sapiens chromosome 5 clone CTD-2348N6, WORKI... 42 0.18 2 (EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,... 38 0.21 6 (AC034220) Homo sapiens chromosome 5 clone CTD-2049H4, compl... 48 0.22 2 (BX088525) Zebrafish DNA sequence from clone DKEYP-51F8 in l... 36 0.23 4 (CR847858) Zebrafish DNA sequence from clone DKEY-78H3 in li... 48 0.25 1 (BX546499) Zebrafish DNA sequence from clone DKEY-27P18 in l... 48 0.25 1 (BX088561) Zebrafish DNA sequence from clone DKEY-257G8 in l... 48 0.25 1 (AC202412) Pongo abelii BAC clone CH276-412I16 from chromoso... 48 0.25 1 (AC198795) Pongo abelii BAC clone CH276-112H21 from chromoso... 48 0.25 1 (AM435900) Vitis vinifera, whole genome shotgun sequence, co... 48 0.25 1 (AX799193) Sequence 42 from Patent WO03054011. 48 0.25 1 (AX182983) Sequence 736 from Patent WO0142511. 48 0.25 1 (AR645044) Sequence 736 from patent US 6869762. 48 0.25 1 (AR533672) Sequence 42 from patent US 6731505. 48 0.25 1 (L81762) Homo sapiens (subclone 8_h7 from P1 H17) DNA sequen... 48 0.25 1 (BC043424) Homo sapiens hypothetical LOC553103, mRNA (cDNA c... 48 0.25 1 (AC008599) Homo sapiens chromosome 5 clone CTB-104P14, compl... 48 0.25 1 (AC200380) Nomascus leucogenys leucogenys clone CH271-373H24... 48 0.25 1 (AC023861) Homo sapiens chromosome 5 clone RP11-772D18 map 5... 48 0.25 1 (AC011429) Homo sapiens chromosome 5 clone XXp1-545G1, WORKI... 48 0.25 1 (FH404104) CHO_OF4829xh22r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.25 1 (EJ329866) 1092963425109 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.25 1 (AI457903) tj48b07.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie... 48 0.25 1 (AI377893) te60f08.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 48 0.25 1 (BM675512) UI-E-EJ1-ajg-b-19-0-UI.s1 UI-E-EJ1 Homo sapiens c... 48 0.25 1 (AA524418) ng44d02.s1 NCI_CGAP_Co3 Homo sapiens cDNA clone I... 48 0.25 1 (BW643424) Dugesia ryukyuensis mRNA, clone: Dr_sW_027_F07, 5... 32 0.29 3 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 0.33 7 (AY521251) Aleurodicus dugesii mitochondrion, complete genome. 42 0.35 3 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 32 0.36 8 (AC010491) Homo sapiens chromosome 5 clone CTD-2335I23, comp... 42 0.37 3 (AC211911) Pongo abelii chromosome UNKNOWN clone CH276-430D9... 34 0.42 5 (AM448283) Vitis vinifera contig VV78X266102.4, whole genome... 38 0.46 5 (CL750131) OR_BBa0116C06.r OR_BBa Oryza nivara genomic clone... 34 0.50 3 (AC026749) Homo sapiens chromosome 5 clone RP11-415K6, compl... 42 0.58 3 (BX088565) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.58 3 (BX119930) Zebrafish DNA sequence from clone DKEY-18G4 in li... 46 0.58 3 (CL725625) OR_BBa0055K02.f OR_BBa Oryza nivara genomic clone... 34 0.68 3 (AC141094) Rattus norvegicus clone CH230-414B7, WORKING DRAF... 42 0.79 4 (AM466846) Vitis vinifera contig VV78X164962.3, whole genome... 42 0.80 2 (AC191233) Pan troglodytes BAC clone CH251-500L12 from chrom... 36 0.83 7 (EA102652) Sequence 35 from patent US 7195870. 36 0.86 4 (BD460304) Diagnosis of Diseases Associated with Cell Cycle. 36 0.86 4 (BD452226) Diagnosis of Diseases Associated with Cell Cycle. 36 0.86 4 (AX323555) Sequence 43 from Patent WO0192565. 36 0.86 4 (AX277872) Sequence 35 from Patent WO0177375. 36 0.86 4 (AX251840) Sequence 101 from Patent WO0168911. 36 0.86 4 (BX572075) Zebrafish DNA sequence from clone CH211-158N13 in... 44 0.89 2 (AC092706) Homo sapiens chromosome 18, clone RP11-658P14, co... 42 0.96 2 (CU463155) Zebrafish DNA sequence from clone CH73-17H3 in li... 46 0.98 1 (BX004869) Zebrafish DNA sequence from clone CH211-69E21 in ... 46 0.98 1 (AC206545) Pongo abelii BAC clone CH276-487H8 from chromosom... 46 0.98 1 (AC157496) Pan troglodytes BAC clone CH251-564E6 from chromo... 46 0.98 1 (DJ386598) Diagnosis of Diseases Associated with Metastasis. 46 0.98 1 (DJ080768) Neisseria Genomic Research. 46 0.98 1 (DD010736) Diagnosis of known genetic Parameters within the ... 46 0.98 1 (DD002107) Neisseria Genomic Sequences And Methods Of Their ... 46 0.98 1 (DD001186) Neisseria Genomic Sequences And Methods Of Their ... 46 0.98 1 (CS238319) Sequence 1 from Patent EP1605061. 46 0.98 1 (AX345555) Sequence 626 from Patent WO0200928. 46 0.98 1 (AX344651) Sequence 76 from Patent WO0200927. 46 0.98 1 (AX344568) Sequence 19 from Patent WO0200932. 46 0.98 1 (AX344567) Sequence 18 from Patent WO0200932. 46 0.98 1 (AX281394) Sequence 58 from Patent WO0177376. 46 0.98 1 (AX043922) Sequence 1 from Patent WO0066791. 46 0.98 1 (AC094789) Rattus norvegicus clone CH230-4C4, WORKING DRAFT ... 46 0.98 1 (CU459151) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.98 1 (AC215951) Saimiri boliviensis boliviensis clone CH254-55N22... 46 0.98 1 (AC212550) Ateles geoffroyi clone UC1-311E24, WORKING DRAFT ... 46 0.98 1 (AC173104) Bos taurus clone CH240-162D5, WORKING DRAFT SEQUE... 46 0.98 1 (AC171614) Bos taurus clone CH240-265P10, WORKING DRAFT SEQU... 46 0.98 1 (EK541967) 1095516063557 Global-Ocean-Sampling_GS-32-01-01-1... 46 0.98 1 (BX329537) human full-length cDNA 3-PRIME end of clone CS0DC... 46 0.98 1 (CP000381) Neisseria meningitidis 053442, complete genome. 46 0.98 1 (AM421808) Neisseria meningitidis serogroup C FAM18 complete... 46 0.98 1 (AL157959) Neisseria meningitidis serogroup A strain Z2491 c... 46 0.98 1 (AE002098) Neisseria meningitidis MC58, complete genome. 46 0.98 1 (BH139696) ENTNI84TR Entamoeba histolytica Sheared DNA Entam... 32 1.1 3 (AG882481) Oryza sativa Indica Group genomic DNA, BAC end se... 34 1.2 3 (DC223400) Plasmodium berghei strain ANKA cDNA clone:MZ00737... 42 1.2 2 (EV822603) BGBV-aaf09e04.g1 Snail_EST_pSMART Biomphalaria gl... 30 1.3 3 (AC012243) Homo sapiens clone RP11-16H6, WORKING DRAFT SEQUE... 38 1.3 3 (EK249844) 1095460272728 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.3 2 (EF506945) Leptosira terrestris UTEX 333 chloroplast, comple... 42 1.4 6 (BX323070) Zebrafish DNA sequence from clone DKEY-45H7 in li... 32 1.5 5 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 34 1.5 17 (AL772220) Mouse DNA sequence from clone RP23-409N18 on chro... 42 1.5 4
>(BJ370604) Dictyostelium discoideum cDNA clone:ddc54p18, 5' end, single read. Length = 365
Score = 704 bits (355), Expect = 0.0 Identities = 355/355 (100%) Strand = Plus / Plus
Query: 1 acaatatatttcatttattaaaaacaaataactaaaaatggcaattattaaaccaggagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acaatatatttcatttattaaaaacaaataactaaaaatggcaattattaaaccaggagg 60
Query: 61 tcactacattgttccaacaaaaggtgaagaaatttcaacatttattcttgaaaatgaagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tcactacattgttccaacaaaaggtgaagaaatttcaacatttattcttgaaaatgaagg 120
Query: 121 agatgaattagcaagatgtgaattaaatcttaatggcaacattcaagaaacacttgatat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agatgaattagcaagatgtgaattaaatcttaatggcaacattcaagaaacacttgatat 180
Query: 181 tttacctcacagcactcaaaccaaaatgatggatgttagaggaaaattaaccttgtgcaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tttacctcacagcactcaaaccaaaatgatggatgttagaggaaaattaaccttgtgcaa 240
Query: 241 tataggtaaaacccatattaaaatcctttaaatttttcatactaaattaacctttatttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tataggtaaaacccatattaaaatcctttaaatttttcatactaaattaacctttatttg 300
Query: 301 tagaaagaaaattaaatcttcaaaacatttttaaataaattggttaatttcaaac 355 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tagaaagaaaattaaatcttcaaaacatttttaaataaattggttaatttcaaac 355
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 603,650,153 Number of extensions: 40755377 Number of successful extensions: 3898571 Number of sequences better than 10.0: 390 Length of query: 417 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 394 Effective length of database: 93,106,754,628 Effective search space: 36684061323432 Effective search space used: 36684061323432 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7. 6 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
3 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |