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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13123-1
Contig ID Contig-U13123-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Contig-U13123-1Q.Seq.d
ATTGAAAATTGAAACCTTTTATAATTATTATTTCTAATAAAAATTCTATT
TTAATTCTATTTTAATTAGTATTTAATTGTCAACAAATGAAAAAAGTGTT
GCTATTAGTATTCTAAAATCACTTTATAATATTACTTCAATTAATATGGT
AAACTCTTCAAACACTTTAATTGTGAGCCAGGATCTCAGTTTTTTCACCA
ACTATATTAAATTAAAAATTAAACTTGTTACTTCATTTTATAATAAATCT
CTTCCTCAATTAAAGAAATTAGATAATTTGGAAATTTCTAAAATCTTATT
ATAAAAACAAATATATTATTCAAAAACAGTTTCTTTAAGAAATATTTCTA
CAAAAATAAAAATAAAAAATTTTTTATATTTTTCATTGATAAAATTTAAA
AAAAAAA
Gap no gap
Contig length 407
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3547622
End point 3548030
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U13123
List of clone(s) 

est1=SSA394F,1,395
est2=CHP811F,88,407
Translated Amino Acid sequence 
lkietfynyyf**kfyfnsilisi*LSTNEKSVAISILKSLYNITSINMVNSSNTLIVSQ
DLSFFTNYIKLKIKLVTSFYNKSLPQLKKLDNLEISKILL*kqiyysktvslrnistkik
iknflyfslikfkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ien*nll*llflikilf*fyfn*ylivnk*kkccy*yskitl*yyfn*ygklfkhfncep
gsqffhqly*ikn*tcyfil**isssikeir*fgnf*nliiktnilfknsffkkyfyknk
nkkffiffidki*kk


Frame B:
lkietfynyyf**kfyfnsilisi*LSTNEKSVAISILKSLYNITSINMVNSSNTLIVSQ
DLSFFTNYIKLKIKLVTSFYNKSLPQLKKLDNLEISKILL*kqiyysktvslrnistkik
iknflyfslikfkkk


Frame C:
*klkpfiiiisnknsililf*lvfncqqmkkvlllvf*nhfiillqliw*tlqtl*l*ar
isvfsptiln*klnlllhfiinlfln*rn*iiwkflksyyknkyiiqkqfl*eiflqk*k
*kifyifh**nlkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13123-1 (Contig-U13123-1Q)
/CSM_Contig/Contig-U13123-1Q.Seq.d
         (407 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Conti...   696  0.0
Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Conti...    36  0.028
Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Conti...    36  0.028
Contig-U04958-1 (Contig-U04958-1Q) /CSM_Contig/Conti...    36  0.028
Contig-U14322-1 (Contig-U14322-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U13348-1 (Contig-U13348-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U13207-1 (Contig-U13207-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U11789-1 (Contig-U11789-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U01842-1 (Contig-U01842-1Q) /CSM_Contig/Conti...    34  0.11

>Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Contig-U13123-1Q.Seq.d
          Length = 407

 Score =  696 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaaattgaaaccttttataattattatttctaataaaaattctattttaattctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attgaaaattgaaaccttttataattattatttctaataaaaattctattttaattctat 60

                                                                       
Query: 61  tttaattagtatttaattgtcaacaaatgaaaaaagtgttgctattagtattctaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttaattagtatttaattgtcaacaaatgaaaaaagtgttgctattagtattctaaaatc 120

                                                                       
Query: 121 actttataatattacttcaattaatatggtaaactcttcaaacactttaattgtgagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actttataatattacttcaattaatatggtaaactcttcaaacactttaattgtgagcca 180

                                                                       
Query: 181 ggatctcagttttttcaccaactatattaaattaaaaattaaacttgttacttcatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggatctcagttttttcaccaactatattaaattaaaaattaaacttgttacttcatttta 240

                                                                       
Query: 241 taataaatctcttcctcaattaaagaaattagataatttggaaatttctaaaatcttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taataaatctcttcctcaattaaagaaattagataatttggaaatttctaaaatcttatt 300

                                                              
Query: 301 ataaaaacaaatatattattcaaaaacagtttctttaagaaatatttctac 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataaaaacaaatatattattcaaaaacagtttctttaagaaatatttctac 351


>Contig-U10617-1 (Contig-U10617-1Q) /CSM_Contig/Contig-U10617-1Q.Seq.d
          Length = 578

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                            
Query: 19 ttataattattatttctaataaaaattctatttt 52
          |||| ||||||||||||| | || ||||||||||
Sbjct: 58 ttattattattatttctatttaatattctatttt 25


>Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Contig-U05554-1Q.Seq.d
          Length = 390

 Score = 36.2 bits (18), Expect = 0.028
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 299 ttataaaaacaaatatattatt 320
           ||||||||| ||||||||||||
Sbjct: 60  ttataaaaagaaatatattatt 81


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,882
Number of Sequences: 6905
Number of extensions: 10882
Number of successful extensions: 1463
Number of sequences better than 10.0: 550
length of query: 407
length of database: 5,674,871
effective HSP length: 16
effective length of query: 391
effective length of database: 5,564,391
effective search space: 2175676881
effective search space used: 2175676881
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 6
Homology vs DNA 
Query= Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Contig-U13123-1Q.Seq.d
         (407 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   379   e-104  2
(BJ370144) Dictyostelium discoideum cDNA clone:ddc53f04, 5' ...   385   e-103  1
(AU072614) Dictyostelium discoideum slug cDNA, clone SSA394.      321   4e-86  2
(Z46811) Caenorhabditis elegans Cosmid C09D8.                      42   0.015  2
(AI269876) qk04a11.x1 NCI_CGAP_Kid3 Homo sapiens cDNA clone ...    48   0.24   1
(BH167051) ENTRS57TF Entamoeba histolytica Sheared DNA Entam...    36   0.68   2
(BH526144) BOGUQ56TR BOGU Brassica oleracea genomic clone BO...    32   0.68   2
(BH996776) oeh19d08.g1 B.oleracea002 Brassica oleracea genom...    32   0.69   2
(CD419457) rj11b01.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel...    40   0.82   2
(X54252) Caenorhabditis elegans complete mitochondrial genome.     46   0.96   1
(EU407805) Caenorhabditis elegans strain PS2025 mitochondrio...    46   0.96   1
(EU407804) Caenorhabditis elegans strain JU258 mitochondrion...    46   0.96   1
(AY171207) Caenorhabditis elegans isolate TR403 cytochrome o...    46   0.96   1
(AY171206) Caenorhabditis elegans isolate RW7000 cytochrome ...    46   0.96   1
(AY171205) Caenorhabditis elegans isolate PB306 cytochrome o...    46   0.96   1
(AY171204) Caenorhabditis elegans isolate PB303 cytochrome o...    46   0.96   1
(AY171203) Caenorhabditis elegans isolate N2 cytochrome oxid...    46   0.96   1
(AY171202) Caenorhabditis elegans isolate KR314 cytochrome o...    46   0.96   1
(AY171201) Caenorhabditis elegans isolate CB4858 cytochrome ...    46   0.96   1
(AY171200) Caenorhabditis elegans isolate CB4857 cytochrome ...    46   0.96   1
(AY171199) Caenorhabditis elegans isolate CB4856 cytochrome ...    46   0.96   1
(AY171198) Caenorhabditis elegans isolate CB4855 cytochrome ...    46   0.96   1
(AY171197) Caenorhabditis elegans isolate CB4854 cytochrome ...    46   0.96   1
(AY171196) Caenorhabditis elegans isolate CB4853 cytochrome ...    46   0.96   1
(AY171195) Caenorhabditis elegans isolate CB4852 cytochrome ...    46   0.96   1
(AY171194) Caenorhabditis elegans isolate AB2 cytochrome oxi...    46   0.96   1
(AY171193) Caenorhabditis elegans isolate AB1 cytochrome oxi...    46   0.96   1
(AL032822) Human DNA sequence from clone RP1-59B16 on chromo...    46   0.96   1
(AC044909) Homo sapiens chromosome 6 clone RP11-573K2 map 6,...    46   0.96   1
(EK304377) 1095462375752 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.96   1
(CW958738) TcB54.3_G04_SP6 Tribolium BAC library Tribolium c...    46   0.96   1
(DV243937) A2FMG89TV Aedes aegypti full length cDNA library,...    46   0.96   1
(AV203653) Caenorhabditis elegans cDNA clone:yk579d11 : 5' e...    46   0.96   1
(AV202361) Caenorhabditis elegans cDNA clone:yk549e10 : 5' e...    46   0.96   1
(AV195161) Caenorhabditis elegans cDNA clone:yk638e10 : 5' e...    46   0.96   1
(AV192643) Caenorhabditis elegans cDNA clone:yk607h5 : 5' en...    46   0.96   1
(DB530458) Homo sapiens hippocampus cDNA, RIKEN full-length ...    46   0.96   1
(D37632) Caenorhabditis elegans cDNA clone yk5f3 : 5' end, s...    46   0.96   1
(D35273) Caenorhabditis elegans cDNA clone yk19c2 : 5' end, ...    46   0.96   1
(C69540) Caenorhabditis elegans cDNA clone yk368b5 : 5' end,...    46   0.96   1
(C65403) Caenorhabditis elegans cDNA clone yk421b4 : 5' end,...    46   0.96   1
(C65311) Caenorhabditis elegans cDNA clone yk420c12 : 5' end...    46   0.96   1
(C64070) Caenorhabditis elegans cDNA clone yk352d8 : 5' end,...    46   0.96   1
(C63838) Caenorhabditis elegans cDNA clone yk324d12 : 5' end...    46   0.96   1
(C63572) Caenorhabditis elegans cDNA clone yk316f7 : 5' end,...    46   0.96   1
(C61731) Caenorhabditis elegans cDNA clone yk248a2 : 5' end,...    46   0.96   1
(C53162) Caenorhabditis elegans cDNA clone yk250h5 : 3' end,...    46   0.96   1
(C44002) Caenorhabditis elegans cDNA clone yk338b11 : 5' end...    46   0.96   1
(C43629) Caenorhabditis elegans cDNA clone yk331a11 : 5' end...    46   0.96   1
(C42086) Caenorhabditis elegans cDNA clone yk284h6 : 5' end,...    46   0.96   1
(C39987) Caenorhabditis elegans cDNA clone yk221h6 : 5' end,...    46   0.96   1
(C32453) Caenorhabditis elegans cDNA clone yk331a11 : 3' end...    46   0.96   1
(BU665288) cl129c05.z1 Hembase; Erythroid Precursor Cells (L...    46   0.96   1
(BJ130908) Caenorhabditis elegans cDNA clone:yk1048f01 : 3' ...    46   0.96   1
(BJ117778) Caenorhabditis elegans cDNA clone:yk1218f09 : 5' ...    46   0.96   1
(BJ100724) Caenorhabditis elegans cDNA clone:yk1017h10 : 5' ...    46   0.96   1
(EV441960) agen0049_010d_f10_p1ca Goat early pregnancy (d4-8...    46   0.96   1
(ET073669) QM0AAA8CH12FM1 CCL1 Citrus clementina genomic clo...    38   1.0    2
(AC172040) Bos taurus clone CH240-182N12, WORKING DRAFT SEQU...    44   1.1    2
(DX545394) GH_MBb0017H21r GH_MBb Gossypium hirsutum genomic ...    40   1.1    2
(BB895809) Macaca fascicularis cDNA clone: Qlv-U112A-E7, 3'e...    32   1.5    3
(CU928605) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.0    4
(DX822976) GH_MBb0024J11r GH_MBb Gossypium hirsutum genomic ...    40   2.0    2
(BX088719) Zebrafish DNA sequence from clone CH211-207H2 in ...    38   2.2    3
(AE002109) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    32   2.2    3
(DQ492251) Leishmania mexicana strain MHOM/??/1994/BEHA maxi...    36   2.2    2
(CT573356) Zebrafish DNA sequence from clone CH211-276F18 in...    38   3.4    4
(EC821853) SME00001884 esmbsro2 Sawyeria marylandensis cDNA,...    36   3.5    2
(AC087527) Homo sapiens chromosome 15 clone RP11-451I17 map ...    44   3.6    2
(CR450744) Zebrafish DNA sequence from clone CH211-242F18 in...    44   3.8    1
(BX470140) Zebrafish DNA sequence from clone CH211-238E6 in ...    44   3.8    1
(AL671976) Mouse DNA sequence from clone RP23-320H14 on chro...    44   3.8    1
(AP008154) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   3.8    1
(AR678507) Sequence 60 from patent US 6902893.                     44   3.8    1
(AR678506) Sequence 59 from patent US 6902893.                     44   3.8    1
(X91644) E.histolytica DNA encoding for cysteine proteinase.       44   3.8    1
(AC025043) Homo sapiens chromosome 15 clone RP11-516C1 map 1...    44   3.8    1
(AC134272) Rattus norvegicus clone CH230-408L6, *** SEQUENCI...    44   3.8    1
(AC123361) Rattus norvegicus clone CH230-26B7, *** SEQUENCIN...    44   3.8    1
(CU856435) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.8    1
(CU855673) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.8    1
(AC026868) Homo sapiens chromosome 15 clone RP11-451I17, WOR...    44   3.8    1
(CU480793) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.8    1
(BH146535) ENTPU68TR Entamoeba histolytica Sheared DNA Entam...    44   3.8    1
(AZ542954) ENTEO24TR Entamoeba histolytica Sheared DNA Entam...    44   3.8    1
(FH704779) CHO_OF5170xk21r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   3.8    1
(CU135836) Equus caballus GSS, BAC clone CH241-258P13, T7 en...    44   3.8    1
(DN898569) nap34h08.y1 Zebrafish anterior segment (minus len...    44   3.8    1
(CK963755) 4078201 BARC 9BOV Bos taurus cDNA clone 9BOV13_D0...    44   3.8    1
(AJ537863) Timarcha balearica EST, clone Timarcha4E3.              44   3.8    1
(BP425942) Homo sapiens mRNA, clone: HIE09776r, 3' end, expr...    44   3.8    1
(BI467176) ic19a05.x4 HR85 islet Homo sapiens cDNA 3', mRNA ...    44   3.8    1
(BI324894) ic19a05.x1 HR85 islet Homo sapiens cDNA 3', mRNA ...    44   3.8    1
(BG688806) 336574 BARC 5BOV Bos taurus cDNA 5', mRNA sequence.     44   3.8    1
(AW826504) fk64b04.x1 Zebrafish adult retina cDNA Danio reri...    44   3.8    1
(EW149892) rese28c_o11.y1 ese Sus scrofa cDNA 5', mRNA seque...    44   3.8    1
(AE000783) Borrelia burgdorferi B31, complete genome.              44   3.8    1
(L06178) Apis mellifera ligustica complete mitochondrial gen...    36   4.2    3
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    32   4.5    2
(CZ958663) 308966 Tomato EcoRI BAC Library Solanum lycopersi...    34   5.7    2

>(AC116984) Dictyostelium discoideum chromosome 2 map 2567470-3108875
              strain AX4, complete sequence.
          Length = 541399

 Score =  379 bits (191), Expect(2) = e-104
 Identities = 194/195 (99%)
 Strand = Plus / Minus


Query: 91     aaaaagtgttgctattagtattctaaaatcactttataatattacttcaattaatatggt 150
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201815 aaaaagtgttgctattagtattctaaaatcactttataatattacttcaattaatatggt 201756


Query: 151    aaactcttcaaacactttaattgtgagccaggatctcagttttttcaccaactatattaa 210
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201755 aaactcttcaaacactttaattgtgagccaggatctcagttttttcaccaactatattaa 201696


Query: 211    attaaaaattaaacttgttacttcattttataataaatctcttcctcaattaaagaaatt 270
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201695 attaaaaattaaacttgttacttcattttataataaatctcttcctcaattaaagaaatt 201636


Query: 271    agataatttggaaat 285
              |||||||||| ||||
Sbjct: 201635 agataatttgtaaat 201621

 Score = 32.2 bits (16), Expect(2) = e-104
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 79     gtcaacaaatgaaaaa 94
              ||||||||||||||||
Sbjct: 201826 gtcaacaaatgaaaaa 201811

 Score = 58.0 bits (29), Expect = 3e-04
 Identities = 35/37 (94%)
 Strand = Plus / Minus


Query: 97     tgttgctattagtattctaaaatcactttataatatt 133
              |||||||||  ||||||||||||||||||||||||||
Sbjct: 201036 tgttgctataggtattctaaaatcactttataatatt 201000

 Score = 48.1 bits (24), Expect = 0.24
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 107    agtattctaaaatcactttataat 130
              ||||||||||||||||||||||||
Sbjct: 198944 agtattctaaaatcactttataat 198921

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 374,145,622
Number of extensions: 25940679
Number of successful extensions: 2360796
Number of sequences better than 10.0: 114
Length of query: 407
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 384
Effective length of database: 93,106,754,628
Effective search space: 35752993777152
Effective search space used: 35752993777152
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Contig-U13123-1Q.Seq.d
         (407 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_81(AC116984|pid:none) Dictyostelium discoideum chromoso...    95   9e-19
AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso...    42   0.009
CP000743_1039(CP000743|pid:none) Methanococcus aeolicus Nankai-3...    38   0.098
AP009180_88(AP009180|pid:none) Candidatus Carsonella ruddii PV D...    38   0.13
AF250284_266(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    37   0.17
CP000853_1294(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,...    36   0.49
EU677193_26(EU677193|pid:none) Oedogonium cardiacum strain SAG 5...    34   1.4
AM412317_2788(AM412317|pid:none) Clostridium botulinum A str. AT...    34   1.8
CP001277_253(CP001277|pid:none) Candidatus Hamiltonella defensa ...    33   2.4
L28109_2(L28109|pid:none) African swine fever virus inverted ter...    33   3.1
AM910993_276(AM910993|pid:none) Plasmodium knowlesi strain H chr...    33   3.1
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...    33   3.1
CR382139_76(CR382139|pid:none) Debaryomyces hansenii strain CBS7...    32   5.4
CP000685_475(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    32   5.4
AY583235_17(AY583235|pid:none) Mycoplasma fermentans strain PG18...    32   7.0
CP000896_615(CP000896|pid:none) Acholeplasma laidlawii PG-8A, co...    32   7.0
AE014187_358(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.0
AE017226_1028(AE017226|pid:none) Treponema denticola ATCC 35405,...    32   9.2
AL035476_29(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    32   9.2
CR940348_310(CR940348|pid:none) Theileria annulata strain Ankara...    32   9.2
CP001056_3286(CP001056|pid:none) Clostridium botulinum B str. Ek...    32   9.2
AJ249738_3(AJ249738|pid:none) Listeria seeligeri ORFA, ORFB, ORF...    32   9.2
AY878348_14(AY878348|pid:none) Listeria seeligeri strain ATCC 35...    32   9.2

>AC116984_81(AC116984|pid:none) Dictyostelium discoideum chromosome
           2 map 2567470-3108875 strain AX4, complete sequence.
          Length = 81

 Score = 94.7 bits (234), Expect = 9e-19
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = +2

Query: 146 MVNSSNTLIVSQDLSFFTNYIKLKIKLVTSFYNKSLPQLKKLDNLEIS 289
           MVNSSNTLIVSQDLSFFTNYIKLKIKLVTSFYNKSLPQLKKLDNLEIS
Sbjct: 1   MVNSSNTLIVSQDLSFFTNYIKLKIKLVTSFYNKSLPQLKKLDNLEIS 48

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 343,027,689
Number of extensions: 4554040
Number of successful extensions: 10890
Number of sequences better than 10.0: 23
Number of HSP's gapped: 10875
Number of HSP's successfully gapped: 23
Length of query: 135
Length of database: 1,051,180,864
Length adjustment: 99
Effective length of query: 36
Effective length of database: 730,761,523
Effective search space: 26307414828
Effective search space used: 26307414828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.81  gvh: 0.47  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U13123-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0