Contig-U13113-1
Contig ID Contig-U13113-1
Contig update 2002.12.18
Contig sequence
>Contig-U13113-1 (Contig-U13113-1Q) /CSM_Contig/Contig-U13113-1Q.Seq.d
NNNNNNNNNNTAANNATAATAATAATNATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAA

Gap no gap
Contig length 118
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U13113
List of clone(s)

est1=CHP423Z,1,109
Translated Amino Acid sequence
XXXXXIIIXIIIIIIIIIIIIIIIIIIIIIIIIIIIIII


Translated Amino Acid sequence (All Frames)
Frame A:
XXXXXIIIXIIIIIIIIIIIIIIIIIIIIIIIIIIIIII


Frame B:
xxx*x***x******************************


Frame C:
xxxxxnnnxnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


own update ----------
Homology vs CSM-cDNA -
dna update 2008.12. 6
Homology vs DNA
Query= Contig-U13113-1 (Contig-U13113-1Q) /CSM_Contig/Contig-U13113-1Q.Seq.d
(118 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 118
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 96
Effective length of database: 93,199,600,587
Effective search space: 8947161656352
Effective search space used: 8947161656352
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

protein update 2006. 6.16
Homology vs Protein
Query= Contig-U13113-1 (Contig-U13113-1Q) /CSM_Contig/Contig-U13113-1Q.Seq.d
(118 letters)

Database: PROTEIN: UniProt/Swiss-Prot + TREMBL + PDBSH + PRF protein
sequence database [Last update Jun/09/2006]
3,762,210 sequences; 1,237,044,461 total letters

Searchingdone

***** No hits found ******

sequence database [Last update Jun/09/2006]
Lambda K H
-1.00 -1.00 -1.00

Gapped
Lambda K H
0.267 0.0410 0.140

[blastall] WARNING: [000.000] 1150383728.asblm.pro: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1150383728.asblm.pro: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-Protein BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

PSORT

psg: 1.01 gvh: 0.21 alm: -0.10 top: 0.47 tms: 0.07 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U13113-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0