Contig-U02065-1
Contig ID Contig-U02065-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02065-1 (Contig-U02065-1Q) /CSM_Contig/Contig-U02065-1Q.Seq.d
CACTGTTGGCCTACTGGTATTCCTTTAATTTAAGACTGTGTGTTTAAATA
AAAAAAATGGAGACACCTACAACATCAACCAATACAGAAAATAATAATAA
TAAAAATAATGACAATATAGATATAAATAGAGATACAAATAAAGATATAG
ATGAAAATAAAAACACCACCACTACCACTACCACCACAACAGATTCAGAA
ACAACAACAACAGTAACATTAGAAAATAAAGAAGAGGAAGTATTATCAAA
GAATCAAAAAAAAAGATTACTTAAAACAGCAAAATGGGAACAATATAAAG
ATCAAAAGAAACAATATATGAGAGAGAAAAAGAAAGAAAATTTAAAAAAG
AGAAAAGAGACAATGACATCTGAAGAGAAGTTAGAGAGAAGTAGAGTGAA
ACAATTGAAAAAGAGAGGACCCGATGTTGGCACATTAGAGGGCCACATTT
TATTTGATTTCGAAATGGAGCAACATATGTAGAAAAGGAAAAGA

Gap no gap
Contig length 494
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3718018
End point 3718495
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U02065
List of clone(s)

est1=VFB656F,1,495
Translated Amino Acid sequence
llaywysfnlrlcv*IKKMETPTTSTNTENNNNKNNDNIDINRDTNKDIDENKNTTTTTT
TTTDSETTTTVTLENKEEEVLSKNQKKRLLKTAKWEQYKDQKKQYMREKKKENLKKRKET
MTSEEKLERSRVKQLKKRGPDVGTLEGHILFDFEMEQHM*krkr


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgipli*dcvfk*kkwrhlqhqpiqkiiiikimti*i*ieiqiki*mkiktpplpl
ppqqiqkqqqq*h*kikkrkyyqrikkkdylkqqngnnikikrnni*erkrkki*krekr
q*hlkrs*reve*nn*kredpmlah*ratfyliskwsnicrkgk


Frame B:
tvgllvfl*fktvclnkkngdtyninqyrk****k**qyryk*ryk*ryr*k*khhhyhy
hhnrfrnnnnsnirk*rrgsiikeskkkit*nskmgti*rsketiyerekerkfkkekrd
ndi*revrek*setiekertrcwhirgphfi*frngatyvekek


Frame C:
llaywysfnlrlcv*IKKMETPTTSTNTENNNNKNNDNIDINRDTNKDIDENKNTTTTTT
TTTDSETTTTVTLENKEEEVLSKNQKKRLLKTAKWEQYKDQKKQYMREKKKENLKKRKET
MTSEEKLERSRVKQLKKRGPDVGTLEGHILFDFEMEQHM*krkr


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02065-1 (Contig-U02065-1Q)
/CSM_Contig/Contig-U02065-1Q.Seq.d
(494 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02065-1 (Contig-U02065-1Q) /CSM_Contig/Conti... 270 1e-72
Contig-U06812-1 (Contig-U06812-1Q) /CSM_Contig/Conti... 50 2e-06
Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Conti... 50 2e-06
Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Conti... 48 9e-06
Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Conti... 46 4e-05
Contig-U04046-1 (Contig-U04046-1Q) /CSM_Contig/Conti... 46 4e-05
Contig-U14656-1 (Contig-U14656-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U11659-1 (Contig-U11659-1Q) /CSM_Contig/Conti... 44 1e-04

>Contig-U02065-1 (Contig-U02065-1Q) /CSM_Contig/Contig-U02065-1Q.Seq.d
Length = 494

Score = 270 bits (136), Expect = 1e-72
Identities = 136/136 (100%)
Strand = Plus / Plus


Query: 359 gacaatgacatctgaagagaagttagagagaagtagagtgaaacaattgaaaaagagagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gacaatgacatctgaagagaagttagagagaagtagagtgaaacaattgaaaaagagagg 418


Query: 419 acccgatgttggcacattagagggccacattttatttgatttcgaaatggagcaacatat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acccgatgttggcacattagagggccacattttatttgatttcgaaatggagcaacatat 478


Query: 479 gtagaaaaggaaaaga 494
||||||||||||||||
Sbjct: 479 gtagaaaaggaaaaga 494


Score = 238 bits (120), Expect = 5e-63
Identities = 138/147 (93%)
Strand = Plus / Plus


Query: 150 gatgaaaataaaaacaccaccactaccactaccaccacaacagattcagaaacaacaaca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gatgaaaataaaaacaccaccactaccactaccaccacaacagattcagaaacaacaaca 209


Query: 210 acagtaacattagaaaataaagaagaggaagtattatcaaagaatcnnnnnnnnngatta 269
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 210 acagtaacattagaaaataaagaagaggaagtattatcaaagaatcaaaaaaaaagatta 269


Query: 270 cttaaaacagcaaaatgggaacaatat 296
|||||||||||||||||||||||||||
Sbjct: 270 cttaaaacagcaaaatgggaacaatat 296


Score = 125 bits (63), Expect = 5e-29
Identities = 79/87 (90%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtattcctttaatttaagactgtgtgtttaaatnnnnnnnntgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 cactgttggcctactggtattcctttaatttaagactgtgtgtttaaataaaaaaaatgg 60


Query: 61 agacacctacaacatcaaccaatacag 87
|||||||||||||||||||||||||||
Sbjct: 61 agacacctacaacatcaaccaatacag 87


>Contig-U06812-1 (Contig-U06812-1Q) /CSM_Contig/Contig-U06812-1Q.Seq.d
Length = 521

Score = 50.1 bits (25), Expect = 2e-06
Identities = 34/37 (91%)
Strand = Plus / Plus


Query: 151 atgaaaataaaaacaccaccactaccactaccaccac 187
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 239 atgaaaataaaaccaccaccactactactactaccac 275


>Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Contig-U00425-1Q.Seq.d
Length = 664

Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtattcctttaatttaa 33
|||||||||||||||||||||| |||| |||||
Sbjct: 1 cactgttggcctactggtattcttttattttaa 33


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,633
Number of Sequences: 6905
Number of extensions: 13633
Number of successful extensions: 5637
Number of sequences better than 10.0: 1035
length of query: 494
length of database: 5,674,871
effective HSP length: 16
effective length of query: 478
effective length of database: 5,564,391
effective search space: 2659778898
effective search space used: 2659778898
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.13
Homology vs DNA
Query= Contig-U02065-1 (Contig-U02065-1Q) /CSM_Contig/Contig-U02065-1Q.Seq.d
(494 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ411502) Dictyostelium discoideum cDNA clone:ddv4o14, 5' e... 194 e-125 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 182 1e-93 6
(AC115373) Rattus norvegicus chromosome 18 clone CH230-124C1... 44 5e-06 2
(AC173463) Sorex araneus clone SA_Ba-37F6, WORKING DRAFT SEQ... 48 3e-04 2
(AC170733) Sorex araneus clone SA_Ba-192K23, WORKING DRAFT S... 48 3e-04 2
(AC116734) Mus musculus chromosome 7, clone RP23-359D11, com... 46 0.001 2
(AC153546) Mus musculus 10 BAC RP23-356P21 (Roswell Park Can... 40 0.001 2
(AC156948) Mus musculus 10 BAC RP24-347D15 (Roswell Park Can... 40 0.001 2
(AC128699) Mus musculus BAC clone RP24-128L21 from chromosom... 46 0.001 2
(AG510662) Mus musculus molossinus DNA, clone:MSMg01-414F12.... 40 0.001 2
(AC179954) Strongylocentrotus purpuratus clone R3-20M16, WOR... 54 0.002 3
(BJ412330) Dictyostelium discoideum cDNA clone:ddv7n24, 5' e... 40 0.002 2
(CQ870482) Sequence 903 from Patent WO2004074320. 42 0.004 2
(CQ870481) Sequence 902 from Patent WO2004074320. 42 0.004 2
(AC135771) Rattus norvegicus clone CH230-99F10, WORKING DRAF... 40 0.004 2
(AC109179) Mus musculus chromosome 18, clone RP23-382N7, com... 42 0.004 2
(AC108244) Rattus norvegicus clone CH230-155O7, *** SEQUENCI... 40 0.004 2
(AC142135) Rattus norvegicus clone CH230-478F3, WORKING DRAF... 40 0.004 2
(AC107230) Mus musculus chromosome 18, clone RP23-238L23, co... 42 0.004 2
(CT025625) Mouse DNA sequence from clone RP23-449N15 on chro... 40 0.004 2
(AC165888) Mus musculus chromosome 3, clone RP24-352B14, com... 38 0.004 2
(AC154720) Mus musculus BAC clone RP24-371C21 from chromosom... 40 0.004 2
(EU643478) Adineta vaga clone Av_TEL_K_B retrotransposons Ju... 40 0.004 2
(CR222488) Forward strand read from insert in 5'HPRT inserti... 42 0.004 2
(AY383673) Rattus norvegicus LRRGT00018 mRNA, complete cds. 40 0.005 2
(BJ415761) Dictyostelium discoideum cDNA clone:ddv23k16, 5' ... 40 0.005 2
(AL670865) Mouse DNA sequence from clone RP23-395J4 on chrom... 50 0.005 2
(AL606755) Mouse DNA sequence from clone RP23-112E4 on chrom... 54 0.005 1
(Z75542) Caenorhabditis elegans Cosmid F55D12. 54 0.005 1
(EC026516) 3870091 KZ41 Caenorhabditis elegans cDNA clone 17... 54 0.005 1
(EC016583) 6371971 KZ41 Caenorhabditis elegans cDNA clone 17... 54 0.005 1
(CB393746) OSTR125F2_1 AD-wrmcDNA Caenorhabditis elegans cDN... 54 0.005 1
(CU856416) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.005 3
(CT476835) Human DNA sequence from clone CH507-286C5 on chro... 48 0.007 2
(AC102325) Mus musculus clone RP24-482P14, WORKING DRAFT SEQ... 50 0.008 2
(AL844604) Mouse DNA sequence from clone RP24-318C20 on chro... 50 0.008 2
(BJ327531) Dictyostelium discoideum cDNA clone:dda20e19, 5' ... 38 0.008 2
(AC133102) Mus musculus BAC clone RP23-173H19 from 1, comple... 48 0.009 2
(AL773520) Mouse DNA sequence from clone RP23-350F23 on chro... 50 0.009 2
(AC115352) Rattus norvegicus clone CH230-216B10, WORKING DRA... 40 0.013 2
(AC098226) Rattus norvegicus clone CH230-56K13, *** SEQUENCI... 42 0.013 2
(AC117874) Rattus norvegicus clone CH230-384J24, WORKING DRA... 40 0.013 2
(AC097233) Rattus norvegicus clone CH230-197F16, *** SEQUENC... 40 0.013 2
(AC135147) Rattus norvegicus clone CH230-125I8, WORKING DRAF... 40 0.013 2
(AC102954) Rattus norvegicus clone CH230-8C8, WORKING DRAFT ... 40 0.013 2
(AC130130) Rattus norvegicus clone CH230-210K23, *** SEQUENC... 40 0.013 2
(AC123451) Rattus norvegicus clone CH230-91B23, *** SEQUENCI... 40 0.013 2
(AC112017) Rattus norvegicus clone CH230-13E8, *** SEQUENCIN... 40 0.013 2
(AC094926) Rattus norvegicus clone CH230-6B21, WORKING DRAFT... 40 0.013 2
(AC094510) Rattus norvegicus clone CH230-4E18, *** SEQUENCIN... 40 0.013 2
(AC094338) Rattus norvegicus clone CH230-3J13, WORKING DRAFT... 40 0.013 2
(AL606969) Mouse DNA sequence from clone RP23-331P21 on chro... 40 0.013 2
(AC087867) Genomic sequence for Mus musculus, clone RP23-183... 40 0.013 2
(AL691427) Mouse DNA sequence from clone RP23-317I15 on chro... 40 0.013 2
(AC102643) Mus musculus chromosome 8, clone RP23-304B22, com... 38 0.013 2
(AC125267) Mus musculus chromosome 10, clone RP24-483E18, co... 40 0.013 2
(AC168273) Mus musculus BAC RP23-184H4 (Roswell Park Cancer... 40 0.013 2
(AL645849) Mouse DNA sequence from clone RP23-14F5 on chromo... 36 0.013 2
(AC093370) Mus musculus clone RP23-289J1, WORKING DRAFT SEQU... 40 0.013 2
(AC113900) Rattus norvegicus clone CH230-328H11, *** SEQUENC... 40 0.013 2
(AF520420) Mus musculus c222389 pseudogene, complete sequenc... 40 0.014 2
(AC233775) Solanum lycopersicum chromosome 2 clone C02SLe012... 40 0.014 2
(AL583893) Mouse DNA sequence from clone RP23-189A18 on chro... 40 0.014 2
(AL607151) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 40 0.014 2
(AL589692) Mouse DNA sequence from clone RP23-385C21 on chro... 40 0.014 2
(AC142004) Rattus norvegicus clone CH230-24A16, *** SEQUENCI... 40 0.014 2
(AC020871) Mus musculus chromosome 11 clone RP23-305A21, LOW... 36 0.015 2
(AK034823) Mus musculus 12 days embryo embryonic body betwee... 36 0.016 2
(AR552813) Sequence 7944 from patent US 6747137. 48 0.016 2
(DY891649) CeleSEQ10395 Cunninghamella elegans pBluescript (... 36 0.017 2
(BB626947) Mus musculus 12 days embryo embryonic body betwee... 36 0.017 2
(BZ214070) CH230-466B11.TV CHORI-230 Segment 2 Rattus norveg... 40 0.017 2
(DH649887) Rattus norvegicus DNA, BAC clone: RNB1-192I03, 5'... 40 0.017 2
(AC123939) Mus musculus BAC clone RP23-418I14 from 12, compl... 52 0.020 1
(AC181731) Strongylocentrotus purpuratus clone R3-1037P5, WO... 42 0.025 2
(DH487008) Monosiga ovata DNA, fosmid clone: MOF-044H21, gen... 48 0.026 2
(AC153566) Mus musculus 10 BAC RP23-5H4 (Roswell Park Cancer... 42 0.029 3
(AC215591) Procavia capensis clone CH280-93A9, WORKING DRAFT... 44 0.031 2
(AC094121) Rattus norvegicus clone CH230-2O6, WORKING DRAFT ... 40 0.033 3
(AX489630) Sequence 6930 from Patent WO02053728. 46 0.033 2
(AC128343) Rattus norvegicus clone CH230-105F16, WORKING DRA... 40 0.034 3
(CU640366) Podospora anserina genomic DNA chromosome 2, supe... 40 0.042 2
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ... 44 0.046 2
(AC157600) Mus musculus chromosome 16 clone RP23-143H15, WOR... 40 0.047 2
(AC129442) Rattus norvegicus clone CH230-116I17, *** SEQUENC... 40 0.047 2
(AC098035) Rattus norvegicus clone CH230-195P24, *** SEQUENC... 40 0.048 2
(AC108583) Rattus norvegicus clone CH230-255O24, *** SEQUENC... 38 0.048 2
(AC123415) Rattus norvegicus clone CH230-159P3, *** SEQUENCI... 40 0.048 2
(AE014179) Mus musculus piebald deletion region section 7 of... 40 0.048 2
(AC109372) Rattus norvegicus clone CH230-176J7, *** SEQUENCI... 40 0.048 2
(AC120680) Rattus norvegicus clone CH230-40I19, WORKING DRAF... 40 0.049 2
(AC135678) Rattus norvegicus clone CH230-247B5, WORKING DRAF... 40 0.049 2
(AC098561) Rattus norvegicus clone CH230-98A11, WORKING DRAF... 40 0.049 2
(AC133986) Rattus norvegicus clone CH230-2J9, WORKING DRAFT ... 40 0.049 2
(AC106318) Rattus norvegicus clone CH230-219E4, *** SEQUENCI... 40 0.049 2
(AC095132) Rattus norvegicus clone CH230-8B15, *** SEQUENCIN... 40 0.049 2
(AC136579) Rattus norvegicus clone CH230-11I20, WORKING DRAF... 40 0.049 2
(AC126891) Rattus norvegicus clone CH230-49A17, *** SEQUENCI... 40 0.049 2
(AC097025) Rattus norvegicus clone CH230-85I13, *** SEQUENCI... 40 0.049 2
(AC096525) Rattus norvegicus clone CH230-84N24, *** SEQUENCI... 40 0.049 2
(AC134113) Rattus norvegicus clone CH230-10K21, WORKING DRAF... 40 0.049 2
(AC097754) Rattus norvegicus clone CH230-75N5, *** SEQUENCIN... 40 0.049 2
(AC133984) Rattus norvegicus clone CH230-30O6, WORKING DRAFT... 40 0.049 2
(AC098444) Rattus norvegicus clone CH230-2G15, *** SEQUENCIN... 40 0.049 2
(AC130775) Rattus norvegicus clone CH230-89I23, *** SEQUENCI... 40 0.049 2
(AC120977) Rattus norvegicus clone CH230-403O11, *** SEQUENC... 40 0.049 2
(AC105698) Rattus norvegicus clone CH230-71M15, *** SEQUENCI... 40 0.049 2
(AC119387) Rattus norvegicus clone CH230-207O19, *** SEQUENC... 40 0.049 2
(AC103472) Rattus norvegicus clone CH230-208G21, WORKING DRA... 34 0.049 2
(AC115557) Rattus norvegicus clone CH230-112J24, *** SEQUENC... 40 0.049 2
(AC159744) Mus musculus clone RP23-329A24, WORKING DRAFT SEQ... 40 0.050 2
(AC120772) Rattus norvegicus clone CH230-203F10, *** SEQUENC... 40 0.050 2
(AC190448) Colobus guereza clone CH272-132J14, WORKING DRAFT... 40 0.050 2
(AC162447) Mus musculus chromosome 1, clone RP24-84B18, comp... 38 0.050 2
(AC115948) Mus musculus chromosome 16, clone RP24-568J12, co... 40 0.050 2
(AL844895) Mouse DNA sequence from clone RP23-359N12 on chro... 40 0.050 2
(AC153367) Mus musculus 10 BAC RP23-182A11 (Roswell Park Can... 40 0.050 2
(AC124506) Mus musculus BAC clone RP23-425E23 from chromosom... 38 0.050 2
(AC117224) Mus musculus BAC clone RP23-356N8 from chromosome... 40 0.050 2
(AC112850) Rattus norvegicus clone CH230-318H15, WORKING DRA... 40 0.050 2
(AC121824) Mus musculus BAC clone RP23-467P15 from 18, compl... 40 0.050 2
(AC136829) Rattus norvegicus clone CH230-338L15, WORKING DRA... 38 0.050 2
(AL731674) Mouse DNA sequence from clone RP23-340M18 on chro... 40 0.050 2
(AC114919) Mus musculus BAC clone RP23-102A8 from 18, comple... 40 0.050 2
(AC099123) Rattus norvegicus clone CH230-198D23, *** SEQUENC... 40 0.050 2
(AC162692) Mus musculus chromosome 1, clone RP23-445K23, com... 38 0.050 2
(AC135119) Mus musculus BAC clone RP24-535H19 from 14, compl... 40 0.050 2
(AC106374) Rattus norvegicus 4 BAC CH230-112C2 (Children's H... 40 0.050 2
(AC132764) Rattus norvegicus clone CH230-367G19, *** SEQUENC... 40 0.050 2
(AC155910) Mus musculus 10 BAC RP24-492P8 (Roswell Park Canc... 40 0.050 2
(AL808135) Mouse DNA sequence from clone RP23-186D8 on chrom... 40 0.050 2
(AC109285) Mus musculus clone RP24-169N2, WORKING DRAFT SEQU... 40 0.050 2
(AC141544) Rattus norvegicus clone CH230-502J22, WORKING DRA... 40 0.051 2
(AC100344) Mus musculus clone RP23-127F18, LOW-PASS SEQUENCE... 40 0.052 2
(CU869014) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU863264) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU871531) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU877085) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU878917) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU866314) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU865693) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU879234) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU879366) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU869658) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU882493) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU870040) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU874310) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU868323) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU884752) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU872667) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU873616) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU873356) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(CU872974) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(EK983767) 1095521107361 Global-Ocean-Sampling_GS-33-01-01-1... 40 0.063 2
(CU882994) Podospora anserina mRNA sequence from clone HH0AB... 40 0.063 2
(DC452428) Monosiga ovata cDNA, clone: MOC-003J03, 5'end. 38 0.063 2
(DC519535) Monosiga ovata cDNA, clone: MOC-100K11, 5'end. 38 0.063 2
(DC490280) Monosiga ovata cDNA, clone: MOC-058G11, 5'end. 38 0.063 2
(DC494086) Monosiga ovata cDNA, clone: MOC-063O06, 5'end. 38 0.063 2
(DC499492) Monosiga ovata cDNA, clone: MOC-071L06, 5'end. 38 0.063 2
(DC484838) Monosiga ovata cDNA, clone: MOC-050J14, 5'end. 38 0.063 2
(DC477310) Monosiga ovata cDNA, clone: MOC-039L06, 5'end. 38 0.063 2
(DC504603) Monosiga ovata cDNA, clone: MOC-079B21, 5'end. 38 0.063 2
(DC487278) Monosiga ovata cDNA, clone: MOC-054B12, 5'end. 38 0.063 2
(DC457352) Monosiga ovata cDNA, clone: MOC-010L20, 5'end. 38 0.063 2
(DC510550) Monosiga ovata cDNA, clone: MOC-087L06, 5'end. 38 0.063 2
(DC471723) Monosiga ovata cDNA, clone: MOC-031K01, 5'end. 38 0.063 2
(DC467778) Monosiga ovata cDNA, clone: MOC-025N16, 5'end. 38 0.063 2
(DC502908) Monosiga ovata cDNA, clone: MOC-076K20, 5'end. 38 0.063 2
(DC482984) Monosiga ovata cDNA, clone: MOC-047O23, 5'end. 38 0.063 2
(DC472207) Monosiga ovata cDNA, clone: MOC-032F02, 5'end. 38 0.063 2
(DC489195) Monosiga ovata cDNA, clone: MOC-056N19, 5'end. 38 0.063 2
(CU882764) Podospora anserina mRNA 5-prime sequence from clo... 40 0.063 2
(DC461755) Monosiga ovata cDNA, clone: MOC-017B05, 5'end. 38 0.063 2
(EB576839) AGENCOURT_51888948 D. ananassae EST Drosophila an... 36 0.064 2
(DC460956) Monosiga ovata cDNA, clone: MOC-015O21, 5'end. 38 0.064 2
(EB578507) AGENCOURT_51350028 D. ananassae EST Drosophila an... 38 0.064 2
(DC456529) Monosiga ovata cDNA, clone: MOC-009I20, 5'end. 38 0.064 2
(DC503299) Monosiga ovata cDNA, clone: MOC-077D24, 5'end. 38 0.064 2
(DC456890) Monosiga ovata cDNA, clone: MOC-010B06, 5'end. 38 0.064 2
(DC507050) Monosiga ovata cDNA, clone: MOC-082K01, 5'end. 38 0.064 2
(GO149720) CAGA34022.fwd CAGA Alvinella pompejana Normalized... 40 0.064 2
(GO149719) CAGA34022.rev CAGA Alvinella pompejana Normalized... 40 0.064 2
(DC478268) Monosiga ovata cDNA, clone: MOC-041B11, 5'end. 38 0.064 2
(DC478571) Monosiga ovata cDNA, clone: MOC-041I19, 5'end. 38 0.064 2
(CU879751) Podospora anserina mRNA 5-prime sequence from clo... 40 0.064 2
(DC482601) Monosiga ovata cDNA, clone: MOC-047G02, 5'end. 38 0.064 2
(DC495179) Monosiga ovata cDNA, clone: MOC-065H18, 5'end. 38 0.064 2
(DC463818) Monosiga ovata cDNA, clone: MOC-020B04, 5'end. 38 0.064 2
(EB586411) AGENCOURT_51886405 D. ananassae EST Drosophila an... 36 0.064 2
(DC476010) Monosiga ovata cDNA, clone: MOC-037N07, 5'end. 38 0.064 2
(DC483952) Monosiga ovata cDNA, clone: MOC-049F02, 5'end. 38 0.064 2
(AZ317272) 1M0035M10R Mouse 10kb plasmid UUGC1M library Mus ... 40 0.064 2
(CU876600) Podospora anserina mRNA 5-prime sequence from clo... 40 0.065 2
(AC023421) Homo sapiens chromosome 18, clone RP11-116O18, co... 44 0.067 3
(AL807800) Mouse DNA sequence from clone RP23-438D2 on chrom... 48 0.077 3
(BX901906) Mouse DNA sequence from clone RP23-328F9 on chrom... 50 0.080 1
(AL844146) Mouse DNA sequence from clone RP24-89J1 on chromo... 50 0.080 1
(AC166161) Mus musculus BAC clone RP23-467M7 from chromosome... 50 0.080 1
(AC124237) Mus musculus chromosome 17, clone RP23-281A8, com... 50 0.080 1
(AC079440) Mus musculus strain 129/Sv clone ct7-340l7 map 2,... 50 0.080 1
(AC079439) Mus musculus strain 129/Sv chromosome 2 clone ct7... 50 0.080 1
(AC096173) Rattus norvegicus clone CH230-11I10, *** SEQUENCI... 50 0.080 1
(CJ438837) Macaca fascicularis mRNA, clone: QccE-16074, 5' e... 50 0.080 1
(BJ327654) Dictyostelium discoideum cDNA clone:dda21d11, 5' ... 50 0.080 1
(BJ326694) Dictyostelium discoideum cDNA clone:dda17l18, 5' ... 50 0.080 1
(FG981878) hem_0006_H09 Chinese mitten crab haemocytes cDNA ... 50 0.080 1
(AW913654) uf55f03.y1 Soares_mammary_gland_NMLMG Mus musculu... 50 0.080 1
(FG735874) G1145P337FC20.T0 Anolis carolinensis pooled norma... 50 0.080 1
(FG357695) RM_G_00371 Eriocheir sinensis hepatopancreas cDNA... 50 0.080 1
(BJ396664) Dictyostelium discoideum cDNA clone:dds43b14, 5' ... 38 0.10 2
(BJ392512) Dictyostelium discoideum cDNA clone:dds27m22, 5' ... 40 0.11 2
(CJ463334) Macaca fascicularis mRNA, clone: QnpA-11543, 5' e... 38 0.14 2
(AC129248) Rattus norvegicus clone CH230-59L19, *** SEQUENCI... 46 0.15 3
(CJ489724) Macaca fascicularis mRNA, clone: QtsA-17485, 5' e... 38 0.15 2
(AC124622) Mus musculus clone RP23-399C4, LOW-PASS SEQUENCE ... 40 0.17 2
(AC095248) Rattus norvegicus clone CH230-10C8, *** SEQUENCIN... 38 0.18 2
(AC095856) Rattus norvegicus clone CH230-10B19, *** SEQUENCI... 38 0.18 2
(AC120822) Rattus norvegicus clone CH230-48F21, *** SEQUENCI... 36 0.18 2
(AC127179) Rattus norvegicus clone CH230-121D22, *** SEQUENC... 38 0.18 2
(AC115652) Rattus norvegicus clone CH230-130J15, WORKING DRA... 38 0.18 2
(AC112043) Rattus norvegicus clone CH230-44N15, *** SEQUENCI... 38 0.18 2
(AC096619) Rattus norvegicus clone CH230-156D24, *** SEQUENC... 34 0.18 2
(AC121423) Rattus norvegicus clone CH230-127L1, *** SEQUENCI... 36 0.18 2
(AC098157) Rattus norvegicus X BAC CH230-75N19 (Children's H... 34 0.18 2
(AC134297) Rattus norvegicus clone CH230-6J16, WORKING DRAFT... 38 0.18 2
(AC094545) Rattus norvegicus clone CH230-4I20, *** SEQUENCIN... 36 0.18 2
(CT030164) Mouse DNA sequence from clone RP23-311P8 on chrom... 38 0.18 2
(AL672179) Mouse DNA sequence from clone RP23-468C6 on chrom... 38 0.18 2
(AC121722) Rattus norvegicus X BAC CH230-342C11 (Children's ... 34 0.18 2
(AU267382) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.19 2
(AL671904) Mouse DNA sequence from clone RP23-243J2 on chrom... 38 0.19 2
(AU267383) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.19 2
(AC133452) Mus musculus clone RP24-148I4, WORKING DRAFT SEQU... 46 0.22 3
(CS082046) Sequence 16 from Patent WO2005040421. 38 0.22 2
(FB509302) Sequence 897 from Patent EP1961827. 38 0.23 2
(DL200046) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 38 0.23 2
(FK719034) pl_015-A8 Ilyanassa (snail) 0-48h Ilyanassa obsol... 38 0.24 2
(AG609398) Mus musculus molossinus DNA, clone:MSMg01-543P22.... 38 0.24 2
(GE931320) G1176P123RF7.T0 Neurospora crassa cDNA - 1 hour O... 38 0.24 2
(DB998164) Quercus mongolica subsp. crispula mRNA, clone: Qm... 36 0.24 2
(CD202886) MS1-0136P-V384-F04-U.B MS1-0136 Schistosoma manso... 36 0.24 2
(AC184732) Atelerix albiventris clone LB4-312M24, WORKING DR... 44 0.25 4
(BZ224129) CH230-361N10.TV CHORI-230 Segment 2 Rattus norveg... 38 0.26 2
(AR547615) Sequence 2746 from patent US 6747137. 40 0.30 2
(AC084745) Mus musculus clone RP23-265J15, WORKING DRAFT SEQ... 44 0.30 4
(BC130141) Xenopus laevis hypothetical protein LOC100037082,... 48 0.32 1
(BV356746) S231P6299RD4.T0 BedlingtonTerrier Canis familiari... 48 0.32 1
(S59342) nuclear pore complex glycoprotein p62 [mice, mRNA, ... 48 0.32 1
(CT990560) M.spretus DNA sequence from clone XX-CH35_359A6 o... 48 0.32 1
(CT573150) Mouse DNA sequence from clone RP24-221A14 on chro... 48 0.32 1
(CT572991) Mouse DNA sequence from clone RP24-434I23 on chro... 48 0.32 1
(BC089317) Mus musculus nucleoporin 62, mRNA (cDNA clone MGC... 48 0.32 1
(BC005784) Mus musculus nucleoporin 62, mRNA (cDNA clone MGC... 48 0.32 1
(AY046056) Mus musculus zonadhesin (Zan) gene, complete cds. 48 0.32 1
(AL831727) Mouse DNA sequence from clone RP23-210M20 on chro... 48 0.32 1
(AL732316) Mouse DNA sequence from clone RP23-367I7 on chrom... 48 0.32 1
(AL591390) Mouse DNA sequence from clone RP23-355L10 on chro... 48 0.32 1
(AF312033) Mus musculus acetylcholinesterase (Ache) and D5Er... 48 0.32 1
(AC171111) Mus musculus BAC clone RP24-131J20 from chromosom... 48 0.32 1
(AC169675) Mus musculus BAC clone RP24-200J3 from chromosome... 48 0.32 1
(AC159629) Mus musculus BAC clone RP24-178C15 from chromosom... 48 0.32 1
(AC158764) Mus musculus chromosome 1, clone RP24-248C2, comp... 48 0.32 1
(AC158231) Mus musculus BAC clone RP24-510K1 from chromosome... 48 0.32 1
(AC155806) Mus musculus BAC clone RP24-308M10 from chromosom... 48 0.32 1
(AC155263) Mus musculus BAC clone RP23-415I11 from chromosom... 48 0.32 1
(AC152954) Mus musculus 6 BAC RP23-296N5 (Roswell Park Cance... 48 0.32 1
(AC150682) Mus musculus BAC clone RP24-210N1 from 5, complet... 48 0.32 1
(AC150276) Mus musculus BAC clone RP23-177G19 from 19, compl... 48 0.32 1
(AC148018) Mus musculus BAC clone RP23-45G4 from 5, complete... 48 0.32 1
(AC146698) Mus musculus chromosome 13, clone RP24-342B2, com... 48 0.32 1
(AC137110) Mus musculus chromosome 7, clone RP23-399P8, comp... 48 0.32 1
(AC134845) Mus musculus BAC clone RP24-424K5 from chromosome... 48 0.32 1
(AC131177) Mus musculus chromosome 1, clone RP23-374I10, com... 48 0.32 1
(AC124454) Mus musculus BAC clone RP24-228I9 from chromosome... 48 0.32 1
(AC123713) Mus musculus chromosome 7, clone RP23-391D20, com... 48 0.32 1
(AC122563) Mus musculus chromosome 1, clone RP24-208F6, comp... 48 0.32 1
(AC118231) Mus musculus chromosome 5, clone RP23-462J24, com... 48 0.32 1
(AC117263) Mus musculus BAC clone RP24-547F18 from chromosom... 48 0.32 1
(AC116713) Mus musculus chromosome 9, clone RP23-118M23, com... 48 0.32 1
(AC116656) Mus musculus BAC clone RP23-10A7 from chromosome ... 48 0.32 1
(AC113550) Mus musculus chromosome 6, clone RP23-275L12, com... 48 0.32 1
(AC113104) Mus musculus chromosome 18, clone RP23-321L15, co... 48 0.32 1
(AC099621) Mus musculus chromosome 15, clone RP23-468J2, com... 48 0.32 1
(AC091656) Rattus norvegicus strain Brown Norway clone RP31-... 48 0.32 1
(AC016522) Mus musculus chromosome 7, clone RP23-352D23, com... 48 0.32 1
(AC189687) Pan troglodytes BAC clone CH251-584M24 from chrom... 48 0.32 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 48 0.32 1
(AP006357) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.32 1
(AM445786) Vitis vinifera contig VV78X220028.10, whole genom... 48 0.32 1
(E08840) Homoserine o-acetyltransferase gene. 48 0.32 1
(E08839) cDNA encoding Homoserine o-acetyltransferase. 48 0.32 1
(CQ603849) Sequence 31607 from Patent WO0171042. 48 0.32 1
(CQ603848) Sequence 31606 from Patent WO0171042. 48 0.32 1
(CQ341185) Sequence 15279 from Patent WO0157275. 48 0.32 1
(CQ328471) Sequence 2565 from Patent WO0157275. 48 0.32 1
(CQ303869) Sequence 14974 from Patent WO0186003. 48 0.32 1
(CQ291368) Sequence 2473 from Patent WO0186003. 48 0.32 1
(CQ266896) Sequence 15157 from Patent WO0157277. 48 0.32 1
(CQ254334) Sequence 2595 from Patent WO0157277. 48 0.32 1
(CQ228754) Sequence 15593 from Patent WO0157273. 48 0.32 1
(CQ215756) Sequence 2595 from Patent WO0157273. 48 0.32 1
(CQ205355) Sequence 7632 from Patent WO0157271. 48 0.32 1
(CQ200252) Sequence 2529 from Patent WO0157271. 48 0.32 1
(CQ180991) Sequence 12387 from Patent WO0157274. 48 0.32 1
(CQ171117) Sequence 2513 from Patent WO0157274. 48 0.32 1
(CQ145546) Sequence 15568 from Patent WO0157276. 48 0.32 1
(CQ132545) Sequence 2567 from Patent WO0157276. 48 0.32 1
(CQ106891) Sequence 15750 from Patent WO0157272. 48 0.32 1
(CQ093768) Sequence 2627 from Patent WO0157272. 48 0.32 1
(CQ075914) Sequence 11714 from Patent WO0157278. 48 0.32 1
(CQ066726) Sequence 2526 from Patent WO0157278. 48 0.32 1
(CQ056637) Sequence 7457 from Patent WO0157270. 48 0.32 1
(CQ051669) Sequence 2489 from Patent WO0157270. 48 0.32 1
(GN008664) Sequence 1105 from Patent EP2014669. 48 0.32 1
(AC147677) Canis Familiaris, clone XX-25A1, complete sequence. 48 0.32 1
(U64830) Dictyostelium discoideum AX2 protein tyrosine kinas... 48 0.32 1
(AY146759) Anopheles gambiae odorant-binding protein AgamOBP... 48 0.32 1
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 48 0.32 1
(AC171140) Helobdella robusta clone CH306-1B2, complete sequ... 48 0.32 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.32 1
(AC008351) Drosophila melanogaster, chromosome 2R, region 59... 48 0.32 1
(AL078472) Homo sapiens chromosome 21 BAC B11L7C8. 48 0.32 1
(AL049849) Homo sapiens chromosome 21 BAC B1L1C6. 48 0.32 1
(AC104059) Homo sapiens BAC clone RP13-514E23 from 4, comple... 48 0.32 1
(AC066608) Homo sapiens chromosome 3 clone RP11-785A7 map 3p... 48 0.32 1
(AC064868) Homo sapiens BAC clone RP11-473E10 from 2, comple... 48 0.32 1
(AC004075) Homo Sapiens Chromosome X clone bWXD90, complete ... 48 0.32 1
(AC002412) Homo sapiens chromosome X clone bWXD105, complete... 48 0.32 1
(AC152820) Mus musculus chromosome 5 clone RP24-338L14, WORK... 48 0.32 1
(AC151979) Mus musculus chromosome 5 clone RP24-171P11, *** ... 48 0.32 1
(AC149096) Mus musculus chromosome 5 clone RP24-171N13, WORK... 48 0.32 1
(AC146997) Arbacia punctulata clone BAP-144G2, WORKING DRAFT... 48 0.32 1
(AC136676) Rattus norvegicus clone CH230-141C19, *** SEQUENC... 48 0.32 1
(AC135813) Rattus norvegicus clone CH230-337P15, WORKING DRA... 48 0.32 1
(AC134810) Rattus norvegicus clone CH230-249N3, WORKING DRAF... 48 0.32 1
(AC133658) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 48 0.32 1
(AC133056) Rattus norvegicus clone CH230-25D4, WORKING DRAFT... 48 0.32 1
(AC131143) Rattus norvegicus clone CH230-76E20, *** SEQUENCI... 48 0.32 1
(AC130874) Rattus norvegicus clone CH230-12E10, *** SEQUENCI... 48 0.32 1
(AC128437) Rattus norvegicus clone CH230-206K10, *** SEQUENC... 48 0.32 1
(AC128289) Rattus norvegicus clone CH230-175C11, *** SEQUENC... 48 0.32 1
(AC128193) Rattus norvegicus clone CH230-443G9, WORKING DRAF... 48 0.32 1
(AC128116) Rattus norvegicus clone CH230-65E12, WORKING DRAF... 48 0.32 1
(AC127666) Rattus norvegicus clone CH230-45J24, *** SEQUENCI... 48 0.32 1
(AC126869) Rattus norvegicus clone CH230-105N22, *** SEQUENC... 48 0.32 1
(AC126661) Rattus norvegicus clone CH230-227I22, *** SEQUENC... 48 0.32 1
(AC120959) Rattus norvegicus clone CH230-11F12, WORKING DRAF... 48 0.32 1
(AC118358) Rattus norvegicus clone CH230-231F15, *** SEQUENC... 48 0.32 1
(AC114464) Rattus norvegicus clone CH230-14C7, WORKING DRAFT... 48 0.32 1
(AC113916) Rattus norvegicus clone CH230-47C11, *** SEQUENCI... 48 0.32 1
(AC112447) Rattus norvegicus clone CH230-236I20, *** SEQUENC... 48 0.32 1
(AC112375) Rattus norvegicus clone CH230-241A10, *** SEQUENC... 48 0.32 1
(AC111341) Rattus norvegicus clone CH230-239J23, *** SEQUENC... 48 0.32 1
(AC108261) Rattus norvegicus clone CH230-197C4, WORKING DRAF... 48 0.32 1
(AC107000) Rattus norvegicus clone CH230-75M19, WORKING DRAF... 48 0.32 1
(AC106619) Rattus norvegicus clone CH230-221E15, *** SEQUENC... 48 0.32 1
(AC103294) Rattus norvegicus clone CH230-142D22, *** SEQUENC... 48 0.32 1
(AC103293) Rattus norvegicus clone CH230-67J14, *** SEQUENCI... 48 0.32 1
(AC102809) Mus musculus clone RP23-2D21, WORKING DRAFT SEQUE... 48 0.32 1
(AC101095) Mus musculus clone RP23-90F16, LOW-PASS SEQUENCE ... 48 0.32 1
(AC099442) Rattus norvegicus clone CH230-193A11, WORKING DRA... 48 0.32 1
(AC098961) Rattus norvegicus clone CH230-183P17, WORKING DRA... 48 0.32 1
(AC098102) Rattus norvegicus clone CH230-84E23, *** SEQUENCI... 48 0.32 1
(AC097431) Rattus norvegicus clone CH230-208M7, WORKING DRAF... 48 0.32 1
(AC096982) Rattus norvegicus clone CH230-168I24, *** SEQUENC... 48 0.32 1
(AC096277) Rattus norvegicus clone CH230-51N6, WORKING DRAFT... 48 0.32 1
(AC095253) Rattus norvegicus clone CH230-10C17, WORKING DRAF... 48 0.32 1
(FP236242) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 0.32 1
(CU856329) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.32 1
(AC073800) Mus musculus clone RP23-440M10, WORKING DRAFT SEQ... 48 0.32 1
(AC064811) Homo sapiens chromosome 4 clone RP11-638N24 map 4... 48 0.32 1
(AC064803) Mus musculus chromosome 11 clone RP23-16G14 map 1... 48 0.32 1
(AP001967) Homo sapiens genomic DNA, chromosome 4q22-q24, cl... 48 0.32 1
(AC190078) Nomascus leucogenys leucogenys clone CH271-218I23... 48 0.32 1
(AC184179) Strongylocentrotus purpuratus clone R3-6C4, WORKI... 48 0.32 1
(AC181502) Strongylocentrotus purpuratus clone R3-1111D7, WO... 48 0.32 1
(AC178738) Strongylocentrotus purpuratus clone R3-13L11, WOR... 48 0.32 1
(AC022231) Mus musculus clone RP23-310A8, *** SEQUENCING IN ... 48 0.32 1
(AC020161) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.32 1
(AC019225) Homo sapiens chromosome 1 clone RP11-550G16, WORK... 48 0.32 1
(AC012208) Homo sapiens chromosome 4 clone RP11-375K17 map 4... 48 0.32 1
(AK171611) Mus musculus B6-derived CD11 +ve dendritic cells ... 48 0.32 1
(AK171455) Mus musculus B6-derived CD11 +ve dendritic cells ... 48 0.32 1
(AK169178) Mus musculus 17 days embryo kidney cDNA, RIKEN fu... 48 0.32 1
(AK168486) Mus musculus 16 days embryo kidney cDNA, RIKEN fu... 48 0.32 1
(AK168166) Mus musculus TIB-55 BB88 cDNA, RIKEN full-length ... 48 0.32 1
(AK166621) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful... 48 0.32 1
(AK155059) Mus musculus NOD-derived CD11c +ve dendritic cell... 48 0.32 1
(AK150087) Mus musculus bone marrow macrophage cDNA, RIKEN f... 48 0.32 1
(AK149637) Mus musculus bone marrow macrophage cDNA, RIKEN f... 48 0.32 1
(AK147894) Mus musculus melanocyte cDNA, RIKEN full-length e... 48 0.32 1
(AY407969) Mus musculus NUP62 gene, VIRTUAL TRANSCRIPT, part... 48 0.32 1
(ER493952) 1093015339576 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.32 1
(EK937036) 1093018348425 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.32 1
(EK849354) 1093017774638 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.32 1
(DX806746) 3654471 VV10 Chlamydomonas reinhardtii genomic cl... 48 0.32 1
(DH503426) Monosiga ovata DNA, fosmid clone: MOF-073D10, gen... 48 0.32 1
(DH484177) Monosiga ovata DNA, fosmid clone: MOF-039M01, gen... 48 0.32 1
(DH464435) Monosiga ovata DNA, fosmid clone: MOF-005B13, gen... 48 0.32 1
(DE405401) Bombyx mori genomic DNA, BAC clone:6C4D. 48 0.32 1
(DE238170) Trifolium pratense DNA, clone:RCG34661. 48 0.32 1
(DE236563) Trifolium pratense DNA, clone:RCG32026. 48 0.32 1
(DE219792) Trifolium pratense DNA, clone:RCG10761. 48 0.32 1
(DE217878) Trifolium pratense DNA, clone:RCG08510. 48 0.32 1
(CZ881734) OC__Ba0284I21.f OC__Ba Oryza coarctata genomic cl... 48 0.32 1
(CZ874023) OC__Ba0273J16.f OC__Ba Oryza coarctata genomic cl... 48 0.32 1
(CZ829322) OC__Ba0210I23.r OC__Ba Oryza coarctata genomic cl... 48 0.32 1
(CZ722665) OC__Ba0048J12.f OC__Ba Oryza coarctata genomic cl... 48 0.32 1
(CW932290) EDCCC55TF A. castellanii, 6-8 kb library from tot... 48 0.32 1
(CW930297) EDCC175TF A. castellanii, 6-8 kb library from tot... 48 0.32 1
(EL464237) CHTS2797.b2_J03.ab1 CHT(LMS) Jerusalem artichoke ... 48 0.32 1
(EG662652) RCLG250TP Castor bean cDNA library from leaves, 1... 48 0.32 1
(EE595265) EST1197 Mycelia Grown in N-acetylglucosamine Hypo... 48 0.32 1
(EC168582) MNE00004912 Monosiga ovata Non-normalized Monosig... 48 0.32 1
(AV508582) Mus musculus cDNA, Abe mouse ES cell cDNA library... 48 0.32 1
(DV652472) DS089A_A02 Eppig Hampl Solter fully-grown mouse o... 48 0.32 1
(DT761107) EST1194956 Aquilegia cDNA library Aquilegia formo... 48 0.32 1
(DT759083) EST1192932 Aquilegia cDNA library Aquilegia formo... 48 0.32 1
(DT756583) EST1190432 Aquilegia cDNA library Aquilegia formo... 48 0.32 1
(DT327228) SusFleck_BF_0101_0104_5_pCNS_A24 SusFleck Backfat... 48 0.32 1
(DT288791) JGI_CAAW2143.fwd CAAW Pimephales promelas testis ... 48 0.32 1
(DT287482) JGI_CAAW632.fwd CAAW Pimephales promelas testis 7... 48 0.32 1
(DT247555) JGI_CAAU2666.fwd CAAU Pimephales promelas brain 7... 48 0.32 1
(DT192208) JGI_CAAS719.fwd CAAS Pimephales promelas brain 7-... 48 0.32 1
(DT111268) JGI_ANNO1335.fwd ANNO Pimephales promelas Whole (... 48 0.32 1
(DR622245) EST1012373 FvI Gibberella moniliformis cDNA clone... 48 0.32 1
(DN635117) Cm_mx0_43a03_SP6 Green Shore Crab Multiple Tissue... 48 0.32 1
(DC474545) Monosiga ovata cDNA, clone: MOC-035K24, 5'end. 48 0.32 1
(DC467267) Monosiga ovata cDNA, clone: MOC-025B12, 5'end. 48 0.32 1
(AU060765) Dictyostelium discoideum slug cDNA, clone SLB410. 48 0.32 1
(AU033763) Dictyostelium discoideum slug cDNA, clone SLB410. 48 0.32 1
(CO426008) UI-M-HU0-cqy-o-01-0-UI.r1 NIH_BMAP_HU0 Mus muscul... 48 0.32 1
(CO131408) GR__Eb43K23.r GR__Eb Gossypium raimondii cDNA clo... 48 0.32 1
(CN724283) E0876F04-5 NIA Mouse four-cell-Embryo cDNA librar... 48 0.32 1
(CN721481) E0823F09-5 NIA Mouse four-cell-Embryo cDNA librar... 48 0.32 1
(CN720595) E0806C04-5 NIA Mouse four-cell-Embryo cDNA librar... 48 0.32 1
(CN718103) E0759A06-5 NIA Mouse four-cell-Embryo cDNA librar... 48 0.32 1
(CN688297) E0256B06-5 NIA Mouse Embryonic Stem (ES) cell (Li... 48 0.32 1
(CJ451672) Macaca fascicularis mRNA, clone: QflA-17290, 5' e... 48 0.32 1
(AL118104) Mus musculus cDNA clone 528_9C15 5'; expressed s... 48 0.32 1
(CF895765) A0202B10-5 NIA Mouse Embryonic Germ Cell cDNA Lib... 48 0.32 1
(CF869514) tric019xj11.b1 T.reesei mycelial culture, Version... 48 0.32 1
(CF731664) UI-M-HA0-cjv-g-11-0-UI.r1 NIH_BMAP_HA0 Mus muscul... 48 0.32 1
(CF172667) B0910H12-5 NIA Mouse Unfertilized Egg cDNA Librar... 48 0.32 1
(CF172647) B0910F11-5 NIA Mouse Unfertilized Egg cDNA Librar... 48 0.32 1
(CD505477) CDA73-H07.x1d-t SHGC-CDA Gasterosteus aculeatus c... 48 0.32 1
(CB899657) tric019xj11 T.reesei mycelial culture, Version 3 ... 48 0.32 1
(CB588445) AGENCOURT_12600424 NIH_MGC_136 Mus musculus cDNA ... 48 0.32 1
(CA566162) K0346H09-5N NIA Mouse Osteoblast cDNA Library (Lo... 48 0.32 1
(CA556167) K0208B06-5N NIA Mouse Unfertilized Egg cDNA Libra... 48 0.32 1
(C91283) Dictyostelium discoideum slug cDNA, clone SSJ746. 48 0.32 1
(BW648543) Closterium peracerosum-strigosum-littorale comple... 48 0.32 1
(BU054559) UI-M-FD0-bzj-l-13-0-UI.r1 NIH_BMAP_FD0 Mus muscul... 48 0.32 1
(BQ443178) UI-M-EV0-bxg-g-21-0-UI.r1 NIH_BMAP_EV0 Mus muscul... 48 0.32 1
(BJ445454) Dictyostelium discoideum cDNA clone:ddv59c17, 3' ... 48 0.32 1
(BJ412903) Dictyostelium discoideum cDNA clone:ddv13f07, 5' ... 48 0.32 1
(BJ408908) Dictyostelium discoideum cDNA clone:dds47i10, 3' ... 48 0.32 1
(BJ406678) Dictyostelium discoideum cDNA clone:dds36g03, 3' ... 48 0.32 1
(BJ405186) Dictyostelium discoideum cDNA clone:dds30j20, 3' ... 48 0.32 1
(BJ400369) Dictyostelium discoideum cDNA clone:dds9n23, 3' e... 48 0.32 1
(BJ399913) Dictyostelium discoideum cDNA clone:dds8c04, 3' e... 48 0.32 1
(BJ398148) Dictyostelium discoideum cDNA clone:dds11p02, 3' ... 48 0.32 1
(BJ382385) Dictyostelium discoideum cDNA clone:ddc44g13, 3' ... 48 0.32 1
(BJ367570) Dictyostelium discoideum cDNA clone:ddc43o05, 5' ... 48 0.32 1
(BJ354167) Dictyostelium discoideum cDNA clone:dda52b23, 3' ... 48 0.32 1
(BJ354125) Dictyostelium discoideum cDNA clone:dda52i17, 3' ... 48 0.32 1
(BJ350786) Dictyostelium discoideum cDNA clone:dda41d01, 3' ... 48 0.32 1
(BJ350776) Dictyostelium discoideum cDNA clone:dda41a06, 3' ... 48 0.32 1
(BJ348608) Dictyostelium discoideum cDNA clone:dda33c22, 3' ... 48 0.32 1
(BJ336709) Dictyostelium discoideum cDNA clone:dda54i24, 5' ... 48 0.32 1
(BJ323938) Dictyostelium discoideum cDNA clone:dda4a05, 5' e... 48 0.32 1
(BI645569) 603275352F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 48 0.32 1
(AA822530) vw13g09.r1 Soares_thymus_2NbMT Mus musculus cDNA ... 48 0.32 1
(AA547529) vk83b10.s1 Knowles Solter mouse 2 cell Mus muscul... 48 0.32 1
(FL504312) vfase1ng_UP_017_B09_28JUL2005_077 Vicia faba cv. ... 48 0.32 1
(FG247323) CBYB4892.b1 CBYB Cercospora zeae-maydis cercospor... 48 0.32 1
(FE811500) CCAG29846.b1 CCAG Petrolisthes cinctipes heart, g... 48 0.32 1
(FE677948) Pv007B_M13F_H05.ab1 Phaseolus vulgaris cv Early g... 48 0.32 1
(FD876972) CBHO19540.fwd CBHO Volvox carteri f. nagariensis ... 48 0.32 1
(FD876971) CBHO19540.rev CBHO Volvox carteri f. nagariensis ... 48 0.32 1
(FD835850) CBGZ4989.rev CBGZ Volvox carteri f. nagariensis i... 48 0.32 1
(FD830241) CBGZ32340.rev CBGZ Volvox carteri f. nagariensis ... 48 0.32 1
(FD820483) CBGZ21328.rev CBGZ Volvox carteri f. nagariensis ... 48 0.32 1
(FD801623) CBGX419.rev CBGX Volvox carteri f. nagariensis in... 48 0.32 1
(EY331803) CAWY4424.rev CAWY Helobdella robusta Subtracted E... 48 0.32 1
(EY316491) CAWX26651.fwd CAWX Helobdella robusta Primary Ear... 48 0.32 1
(EY316490) CAWX26651.rev CAWX Helobdella robusta Primary Ear... 48 0.32 1
(EY298785) CAWX14103.fwd CAWX Helobdella robusta Primary Ear... 48 0.32 1
(EY295225) CAWX12130.fwd CAWX Helobdella robusta Primary Ear... 48 0.32 1
(EY295224) CAWX12130.rev CAWX Helobdella robusta Primary Ear... 48 0.32 1
(EX850982) CBNC8772.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.32 1
(EX850403) CBNC8454.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.32 1
(EX845925) CBNC6139.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.32 1
(AW227944) up19d01.y1 NCI_CGAP_Mam4 Mus musculus cDNA clone ... 48 0.32 1
(BJ387622) Dictyostelium discoideum cDNA clone:dds3e21, 5' e... 38 0.33 2
(BJ370276) Dictyostelium discoideum cDNA clone:ddc53e16, 5' ... 38 0.38 2
(BJ363867) Dictyostelium discoideum cDNA clone:ddc28l19, 5' ... 38 0.40 2
(AC206580) Pongo abelii chromosome 15 clone CH276-286O21, WO... 38 0.41 8
(BJ388312) Dictyostelium discoideum cDNA clone:dds8n21, 5' e... 44 0.42 2

>(BJ411502) Dictyostelium discoideum cDNA clone:ddv4o14, 5' end,
single read.
Length = 495

Score = 194 bits (98), Expect(5) = e-125
Identities = 98/98 (100%)
Strand = Plus / Plus


Query: 397 tgaaacaattgaaaaagagaggacccgatgttggcacattagagggccacattttatttg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgaaacaattgaaaaagagaggacccgatgttggcacattagagggccacattttatttg 456


Query: 457 atttcgaaatggagcaacatatgtagaaaaggaaaaga 494
||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atttcgaaatggagcaacatatgtagaaaaggaaaaga 494

Score = 182 bits (92), Expect(5) = e-125
Identities = 92/92 (100%)
Strand = Plus / Plus


Query: 164 caccaccactaccactaccaccacaacagattcagaaacaacaacaacagtaacattaga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 caccaccactaccactaccaccacaacagattcagaaacaacaacaacagtaacattaga 223


Query: 224 aaataaagaagaggaagtattatcaaagaatc 255
||||||||||||||||||||||||||||||||
Sbjct: 224 aaataaagaagaggaagtattatcaaagaatc 255

Score = 97.6 bits (49), Expect(5) = e-125
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtattcctttaatttaagactgtgtgtttaaat 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggtattcctttaatttaagactgtgtgtttaaat 49

Score = 46.1 bits (23), Expect(5) = e-125
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 58 tggagacacctacaacatcaacc 80
|||||||||||||||||||||||
Sbjct: 58 tggagacacctacaacatcaacc 80

Score = 30.2 bits (15), Expect(5) = e-125
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 265 gattacttaaaacag 279
|||||||||||||||
Sbjct: 265 gattacttaaaacag 279

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 372,025,839
Number of extensions: 27868623
Number of successful extensions: 4025824
Number of sequences better than 10.0: 1287
Length of query: 494
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 471
Effective length of database: 99,442,330,388
Effective search space: 46837337612748
Effective search space used: 46837337612748
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U02065-1 (Contig-U02065-1Q) /CSM_Contig/Contig-U02065-1Q.Seq.d
(494 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BT074481_1(BT074481|pid:none) Osmerus mordax clone omor-eva-509-... 32 8.2

>BT074481_1(BT074481|pid:none) Osmerus mordax clone omor-eva-509-107
tRNA guanine-N1 methyltransferase putative mRNA,
complete cds.
Length = 311

Score = 32.0 bits (71), Expect = 8.2
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3

Query: 243 LSKNQKKRLLKTAKWEQYKDQKKQ 314
+SK Q+K+LLK +WE+ +D +KQ
Sbjct: 25 ISKRQRKKLLKHQQWEEQRDLRKQ 48

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 418,715,187
Number of extensions: 5853548
Number of successful extensions: 8772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8750
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,051,180,864
Length adjustment: 118
Effective length of query: 46
Effective length of database: 669,266,902
Effective search space: 30786277492
Effective search space used: 30786277492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.77 gvh: 0.22 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.37 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: cytoplasmic
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U02065-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0