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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13094-1
Contig ID Contig-U13094-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Contig-U13094-1Q.Seq.d
GATTCTCTCATCTCATCACTTTATAGGGTAATTATTTTGTTGTCATCGTT
ATTATAATTAAATTCGGAGTAGCAACAACTATCAGAAGATTTTACATATT
CAAACTTTCCAATTAGAAAAACATTTCCTAAAATTGGTATAAATAAATCT
ATATATTTTTATTTTATAAAGAAAAAAAAAAATGAAAAATATATTTTCAA
AAATAATAATATTATTAATTGTATTAATTTTCATAAATCATTGTCTGTGT
AGTAGTGGTAATTCAATTACTCCAACACCAGTATCAACAGGATCACCAAC
GACCAATGAAGTTTTAGTTAGTATTTATAGTGATGGTTTAAATAGTTCAT
TTACTATAGTTTCAAGTAGTGAATTACAAGAAGTAAAAACACCAACACAT
GGGGGAAGTAATAGTAGTATATCATTTACCACAGATTTTTATATTTTTAG
TAAAACCAATAGCATAGCCAATATTACAATAAATAAACAATTATTTAAAA
CTTTAAGAATTTGGATCAATCCAACCACATTTCAACAAGATATAACCGTT
TCTTTAATTACATCAGATAAGGAGATTCATGCAATACCAATTACCAATTT
AATAAATCCAATTAATTCAGTATCACGTTTATCACATCTACAACCTAATA
AATGGACAGAAGTTGATATTGATTTAGAGTTTTTCCCATCCACTGATTAT
CGTGCAATTTGGTTCCTTCAAAGACATCCAAATGGTTCAGTAATTTTAGA
TGATATTGGTTTAGTTGTTAGAGAAACTCCAAGAAATAGAAGACAAATTT
ATAAAGGTGGAGTTCAAGGTTATGGCGTTATCATTTCTCAAGAAAAAGGT
GTTAAACTTTATCAAAATGTTAAAACTTATAAAAAATCACCATATTCAAT
CGTTTTCAACATGAAAAAGTCTAGAGCATTTTCAATTGATTTTTCAATCA
ACTATTGACACTCAAACAAATGAGGATGATATGGATTTTGTATTTCATAT
ATTATCAAAAAAGAAATTACCAACAACTGGTGGTGATATAATGGTATCTT
TTATACCAATTCACCCATTGGATGCTGTACCAAGATTTAACTTAACAGGT
AGTAAAACAAAATCACCTTGTCAAGTTGTAAGTTTACCAGAGAATAAATG
GATAAAATGTGCAATTAGAATTCCAAAATCAATAGAATTTAGAAAAATTC
AATTATCTTATTCAAATTCAAATCTTTCAACAACCTATCATATTTTCTTG
GATGATATTTATTTTCAATCACCAGTTACAGGTGATAAAACTTTAAATAA
TCCTTTACTTTCAAATAGTTTATTAGATTCATTTAAAAATTCTGCATCAT
TTCAAGATACAATCTCTTTAAGTAATAATAAATTAAATCAAATTTTACCA
TCTTCTTTACCTAAAATTGTTTCTTCACCACCAAAAATTCAACCTGAAAT
AAACAAGAAAAACAACAACAACAACAACCACCAACCTCACAATTTAATCC
AAATTTACCAATTCCATTAAAAAATGAAGAAGATGAATTATTAAAAGAAT
TAGAATCATTATCAGTTACATCAAATCCATTACCAAAACAAGATGAAAAT
AAACAAAAAACAAGTGAATTAATTTAAAATTT
Gap no gap
Contig length 1632
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3287071
End point 3285516
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 6
Link to clone list U13094
List of clone(s) 

est1=CHO277F,1,325
est2=SLE646F,97,675
est3=CHQ753F,229,784
est4=SSK130E,250,1403
est5=SLE646Z,796,1406
est6=SSJ685E,1255,1632
Translated Amino Acid sequence 
ilsshhfig*lfcchryyn*irssnnyqkilhiqtfqlekhflklv*inlyifil*RKKK
MKNIFSKIIILLIVLIFINHCLCSSGNSITPTPVSTGSPTTNEVLVSIYSDGLNSSFTIV
SSSELQEVKTPTHGGSNSSISFTTDFYIFSKTNSIANITINKQLFKTLRIWINPTTFQQD
ITVSLITSDKEIHAIPITNLINPINSVSRLSHLQPNKWTEVDIDLEFFPSTDYRAIWFLQ
RHPNGSVILDDIGLVVRETPRNRRQIYKGGVQGYGVIISQEKGVKLYQNVKTYKKSPYSI
VFNMKKSRAFSIDFSINY*hsnk*g*ygfcisyiikkeitnnww*yngifytnspigcct
ki*lnr**nkitlssckftre*mdkmcn*nskinri*knsiilfkfksfnnlsyflg*yl
fsitsyr**nfk*sftfk*firfi*kfciisrynlfk***iksnftifft*ncffttkns
t*nkqekqqqqqpptsqfnpnlpiplkneedellkeleslsvtsnplpkqdenkqktsel
i*n
Translated Amino Acid sequence (All Frames) 
Frame A:
dslisslyrviillssll*lnse*qqlsedftysnfpirktfpkiginksiyfyfikkkk
nekyifknnniincinfhkslsv**w*fnysntsinritndq*sfs*yl**wfk*fiyys
fk**itrskntntwgk***yiiyhrflyf**nq*hsqyynk*tii*nfknldqsnhistr
ynrffnyir*gdscntnyqfnksn*fsitfitstt**mdrs*y*frvfpih*lscnlvps
ktskwfsnfr*ywfsc*rnskk*ktnl*rwssrlwryhfsrkrc*tlskc*nl*kitifn
rfqhekv*sifn*ffnqlltlkqmrmiwilyfiyyqkrnyqqlvvi*wyllyqfthwmly
qdlt*qvvkqnhlvkl*vyqring*nvqlefqnq*nlekfnyliqiqifqqpiifswmif
ifnhqlqvikl*iilyfqivy*ihlkilhhfkiqsl*viin*ikfyhllylklflhhqkf
nlk*trktttttttnlti*skftnsikk*rr*iikririiisyiksitktr*k*tknk*i
nlkf


Frame B:
ilsshhfig*lfcchryyn*irssnnyqkilhiqtfqlekhflklv*inlyifil*RKKK
MKNIFSKIIILLIVLIFINHCLCSSGNSITPTPVSTGSPTTNEVLVSIYSDGLNSSFTIV
SSSELQEVKTPTHGGSNSSISFTTDFYIFSKTNSIANITINKQLFKTLRIWINPTTFQQD
ITVSLITSDKEIHAIPITNLINPINSVSRLSHLQPNKWTEVDIDLEFFPSTDYRAIWFLQ
RHPNGSVILDDIGLVVRETPRNRRQIYKGGVQGYGVIISQEKGVKLYQNVKTYKKSPYSI
VFNMKKSRAFSIDFSINY*hsnk*g*ygfcisyiikkeitnnww*yngifytnspigcct
ki*lnr**nkitlssckftre*mdkmcn*nskinri*knsiilfkfksfnnlsyflg*yl
fsitsyr**nfk*sftfk*firfi*kfciisrynlfk***iksnftifft*ncffttkns
t*nkqekqqqqqpptsqfnpnlpiplkneedellkeleslsvtsnplpkqdenkqktsel
i*n


Frame C:
fshlitl*gnyfvviviiikfgvattirrfyifklsn*knis*nwyk*iyiflfykekkk
*kiyfqk**yy*ly*fs*iivcvvvviqllqhqyqqdhqrpmkf*lvfivmv*ivhll*f
qvvnykk*khqhmgevivvyhlpqififlvkpia*pilq*innylkl*efgsiqphfnki
*pfl*lhqirrfmqyqlpi**iqliqyhvyhiynlingqklili*sfshpliivqfgsfk
diqmvq*f*milv*lleklqeiedkfikvefkvmalsflkkkvlnfikmlkliknhhiqs
fst*kslehfqlifqstidtqtneddmdfvfhilskkklpttggdimvsfipihpldavp
rfnltgsktkspcqvvslpenkwikcairipksiefrkiqlsysnsnlsttyhiflddiy
fqspvtgdktlnnpllsnslldsfknsasfqdtislsnnklnqilpsslpkivssppkiq
peinkknnnnnnhqphnliqiyqfh*kmkkmny*kn*nhyqlhqihyqnkmkinkkqvn*
fki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13094-1 (Contig-U13094-1Q)
/CSM_Contig/Contig-U13094-1Q.Seq.d
         (1632 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti...  2767  0.0
Contig-U11301-1 (Contig-U11301-1Q) /CSM_Contig/Conti...   272  1e-72
Contig-U13858-1 (Contig-U13858-1Q) /CSM_Contig/Conti...    92  2e-18
Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Conti...    50  8e-06
Contig-U03663-1 (Contig-U03663-1Q) /CSM_Contig/Conti...    50  8e-06
Contig-U11279-1 (Contig-U11279-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14865-1 (Contig-U14865-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13610-1 (Contig-U13610-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U12511-1 (Contig-U12511-1Q) /CSM_Contig/Conti...    40  0.007

>Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Contig-U13094-1Q.Seq.d
          Length = 1632

 Score = 2767 bits (1396), Expect = 0.0
 Identities = 1418/1429 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    gattctctcatctcatcactttatagggtaattattttgttgtcatcgttattataatta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gattctctcatctcatcactttatagggtaattattttgttgtcatcgttattataatta 60

                                                                        
Query: 61   aattcggagtagcaacaactatcagaagattttacatattcaaactttccaattagaaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aattcggagtagcaacaactatcagaagattttacatattcaaactttccaattagaaaa 120

                                                                        
Query: 121  acatttcctaaaattggtataaataaatctatatatttttattttataaagnnnnnnnnn 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 121  acatttcctaaaattggtataaataaatctatatatttttattttataaagaaaaaaaaa 180

                                                                        
Query: 181  nntgaaaaatatattttcaaaaataataatattattaattgtattaattttcataaatca 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aatgaaaaatatattttcaaaaataataatattattaattgtattaattttcataaatca 240

                                                                        
Query: 241  ttgtctgtgtagtagtggtaattcaattactccaacaccagtatcaacaggatcaccaac 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ttgtctgtgtagtagtggtaattcaattactccaacaccagtatcaacaggatcaccaac 300

                                                                        
Query: 301  gaccaatgaagttttagttagtatttatagtgatggtttaaatagttcatttactatagt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gaccaatgaagttttagttagtatttatagtgatggtttaaatagttcatttactatagt 360

                                                                        
Query: 361  ttcaagtagtgaattacaagaagtaaaaacaccaacacatgggggaagtaatagtagtat 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ttcaagtagtgaattacaagaagtaaaaacaccaacacatgggggaagtaatagtagtat 420

                                                                        
Query: 421  atcatttaccacagatttttatatttttagtaaaaccaatagcatagccaatattacaat 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atcatttaccacagatttttatatttttagtaaaaccaatagcatagccaatattacaat 480

                                                                        
Query: 481  aaataaacaattatttaaaactttaagaatttggatcaatccaaccacatttcaacaaga 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  aaataaacaattatttaaaactttaagaatttggatcaatccaaccacatttcaacaaga 540

                                                                        
Query: 541  tataaccgtttctttaattacatcagataaggagattcatgcaataccaattaccaattt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tataaccgtttctttaattacatcagataaggagattcatgcaataccaattaccaattt 600

                                                                        
Query: 601  aataaatccaattaattcagtatcacgtttatcacatctacaacctaataaatggacaga 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  aataaatccaattaattcagtatcacgtttatcacatctacaacctaataaatggacaga 660

                                                                        
Query: 661  agttgatattgatttagagtttttcccatccactgattatcgtgcaatttggttccttca 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  agttgatattgatttagagtttttcccatccactgattatcgtgcaatttggttccttca 720

                                                                        
Query: 721  aagacatccaaatggttcagtaattttagatgatattggtttagttgttagagaaactcc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  aagacatccaaatggttcagtaattttagatgatattggtttagttgttagagaaactcc 780

                                                                        
Query: 781  aagaaatagaagacaaatttataaaggtggagttcaaggttatggcgttatcatttctca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  aagaaatagaagacaaatttataaaggtggagttcaaggttatggcgttatcatttctca 840

                                                                        
Query: 841  agaaaaaggtgttaaactttatcaaaatgttaaaacttataaaaaatcaccatattcaat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  agaaaaaggtgttaaactttatcaaaatgttaaaacttataaaaaatcaccatattcaat 900

                                                                        
Query: 901  cgttttcaacatgaaaaagtctagagcattttcaattgatttttcaatcaactattgaca 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cgttttcaacatgaaaaagtctagagcattttcaattgatttttcaatcaactattgaca 960

                                                                        
Query: 961  ctcaaacaaatgaggatgatatggattttgtatttcatatattatcaaaaaagaaattac 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ctcaaacaaatgaggatgatatggattttgtatttcatatattatcaaaaaagaaattac 1020

                                                                        
Query: 1021 caacaactggtggtgatataatggtatcttttataccaattcacccattggatgctgtac 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 caacaactggtggtgatataatggtatcttttataccaattcacccattggatgctgtac 1080

                                                                        
Query: 1081 caagatttaacttaacaggtagtaaaacaaaatcaccttgtcaagttgtaagtttaccag 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caagatttaacttaacaggtagtaaaacaaaatcaccttgtcaagttgtaagtttaccag 1140

                                                                        
Query: 1141 agaataaatggataaaatgtgcaattagaattccaaaatcaatagaatttagaaaaattc 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 agaataaatggataaaatgtgcaattagaattccaaaatcaatagaatttagaaaaattc 1200

                                                                        
Query: 1201 aattatcttattcaaattcaaatctttcaacaacctatcatattttcttggatgatattt 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aattatcttattcaaattcaaatctttcaacaacctatcatattttcttggatgatattt 1260

                                                                        
Query: 1261 attttcaatcaccagttacaggtgataaaactttaaataatcctttactttcaaatagtt 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 attttcaatcaccagttacaggtgataaaactttaaataatcctttactttcaaatagtt 1320

                                                                        
Query: 1321 tattagattcatttaaaaattctgcatcatttcaagatacaatctctttaagtaataata 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tattagattcatttaaaaattctgcatcatttcaagatacaatctctttaagtaataata 1380

                                                             
Query: 1381 aattaaatcaaattttaccatcttctttacctaaaattgtttcttcacc 1429
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 aattaaatcaaattttaccatcttctttacctaaaattgtttcttcacc 1429


 Score =  305 bits (154), Expect = 8e-83
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1479 caccaacctcacaatttaatccaaatttaccaattccattaaaaaatgaagaagatgaat 1538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 caccaacctcacaatttaatccaaatttaccaattccattaaaaaatgaagaagatgaat 1538

                                                                        
Query: 1539 tattaaaagaattagaatcattatcagttacatcaaatccattaccaaaacaagatgaaa 1598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tattaaaagaattagaatcattatcagttacatcaaatccattaccaaaacaagatgaaa 1598

                                              
Query: 1599 ataaacaaaaaacaagtgaattaatttaaaattt 1632
            ||||||||||||||||||||||||||||||||||
Sbjct: 1599 ataaacaaaaaacaagtgaattaatttaaaattt 1632


>Contig-U11301-1 (Contig-U11301-1Q) /CSM_Contig/Contig-U11301-1Q.Seq.d
          Length = 1043

 Score =  272 bits (137), Expect = 1e-72
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   attctctcatctcatcactttatagggtaattattttgttgtcatcgttattataattaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18  attctctcatctcatcactttatagggtaattattttgttgtcatcgttattataattaa 77

                                                                       
Query: 62  attcggagtagcaacaactatcagaagattttacatattcaaactttccaattagaaaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  attcggagtagcaacaactatcagaagattttacatattcaaactttccaattagaaaaa 137

                            
Query: 122 catttcctaaaattggt 138
           |||||||||||||||||
Sbjct: 138 catttcctaaaattggt 154


>Contig-U13858-1 (Contig-U13858-1Q) /CSM_Contig/Contig-U13858-1Q.Seq.d
          Length = 650

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                          
Query: 1479 caccaacctcacaatttaatccaaatttaccaattccattaaaaaa 1524
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  caccaacctcacaatttaatccaaatttaccaattccattaaaaaa 650


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,552
Number of Sequences: 6905
Number of extensions: 44552
Number of successful extensions: 6130
Number of sequences better than 10.0: 694
length of query: 1632
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1616
effective length of database: 5,564,391
effective search space: 8992055856
effective search space used: 8992055856
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 6
Homology vs DNA 
Query= Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Contig-U13094-1Q.Seq.d
         (1632 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ370836) Dictyostelium discoideum cDNA clone:ddc55j13, 5' ...  1068   0.0    1
(AU034889) Dictyostelium discoideum slug cDNA, clone SLE646.      438   0.0    3
(C91366) Dictyostelium discoideum slug cDNA, clone SSK130.        438   0.0    3
(AU061565) Dictyostelium discoideum slug cDNA, clone SLE646.      831   0.0    1
(C91147) Dictyostelium discoideum slug cDNA, clone SSJ685.        339   e-164  2
(AU074245) Dictyostelium discoideum slug cDNA, clone SSK130.      476   e-129  1
(BJ369518) Dictyostelium discoideum cDNA clone:ddc50i20, 5' ...   230   2e-86  2
(AC115588) Dictyostelium discoideum chromosome 2 map complem...   278   6e-70  1
(BJ392253) Dictyostelium discoideum cDNA clone:dds26p23, 5' ...   228   5e-55  1
(BJ366921) Dictyostelium discoideum cDNA clone:ddc40p13, 5' ...   212   3e-50  1
(BJ369485) Dictyostelium discoideum cDNA clone:ddc50b21, 5' ...   202   3e-47  1
(BJ332932) Dictyostelium discoideum cDNA clone:dda40k09, 5' ...   182   3e-41  1
(BJ364954) Dictyostelium discoideum cDNA clone:ddc33i16, 5' ...   131   9e-26  1
(BJ340957) Dictyostelium discoideum cDNA clone:dda4e18, 3' e...    66   5e-06  1
(BJ340832) Dictyostelium discoideum cDNA clone:dda4f05, 3' e...    66   5e-06  1
(AX458578) Sequence 124 from Patent WO0246454.                     34   5e-05  12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   6e-05  22
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   1e-04  22
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   2e-04  19
(AX345955) Sequence 1026 from Patent WO0200928.                    34   0.001  7
(AX344574) Sequence 25 from Patent WO0200932.                      36   0.008  16
(AX345695) Sequence 766 from Patent WO0200928.                     34   0.008  9
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.011  20
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.017  21
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   0.045  11
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    30   0.051  23
(BP190580) Dugesia japonica cDNA, clone: 04944_HH, expressed...    52   0.068  1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.069  17
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    32   0.072  14
(EJ766416) 1092963265355 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.090  3
(EA048112) Sequence 3 from patent US 7154021.                      38   0.096  14
(EA048111) Sequence 2 from patent US 7154021.                      38   0.096  14
(AX196296) Sequence 3 from Patent WO0151627.                       38   0.096  14
(AX196295) Sequence 2 from Patent WO0151627.                       38   0.096  14
(BJ426007) Dictyostelium discoideum cDNA clone:ddv57e23, 5' ...    40   0.20   2
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    40   0.21   14
(CU469271) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.21   8
(AX346023) Sequence 1094 from Patent WO0200928.                    36   0.23   5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   0.26   19
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.27   19
(AZ526334) 254PbD02 Pb MBN #21 Plasmodium berghei genomic 3'...    50   0.27   1
(DC216209) Plasmodium berghei strain ANKA cDNA clone:MG01873...    50   0.27   1
(BJ342849) Dictyostelium discoideum cDNA clone:dda15j05, 3' ...    50   0.27   1
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441...    34   0.27   7
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.29   14
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.31   14
(AX458557) Sequence 103 from Patent WO0246454.                     34   0.32   5
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.34   18
(AX344566) Sequence 17 from Patent WO0200932.                      42   0.40   11
(CS468864) Sequence 55 from Patent EP1748080.                      34   0.42   15
(CS419341) Sequence 55 from Patent WO2006094836.                   34   0.42   15
(AC196760) Citrus sinensis clone CSRBBa-041J17, WORKING DRAF...    36   0.47   7
(AE017245) Mycoplasma synoviae 53, complete genome.                32   0.48   23
(EJ928444) 1093018793400 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.49   3
(DD010736) Diagnosis of known genetic Parameters within the ...    38   0.51   8
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   0.57   18
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   0.57   21
(AC211557) Zea mays chromosome 6 clone CH201-523G16; ZMMBBc0...    34   0.58   2
(AC204516) Zea mays chromosome 5 clone CH201-475G13; ZMMBBc0...    34   0.58   2
(AX347002) Sequence 2073 from Patent WO0200928.                    34   0.59   6
(DD061342) Methods and nucleic acids for the analysis of  he...    34   0.62   6
(DD061196) Methods and nucleic acids for the analysis of  he...    34   0.62   6
(AX598904) Sequence 244 from Patent WO02077272.                    34   0.62   6
(AX598758) Sequence 98 from Patent WO02077272.                     34   0.62   6
(BX908771) Zebrafish DNA sequence from clone CH211-214K13 in...    42   0.63   4
(AX323726) Sequence 214 from Patent WO0192565.                     38   0.70   4
(AL606462) Human DNA sequence from clone CTD-2090I13 on chro...    36   0.73   5
(DU057799) 97630 Tomato HindIII BAC Library Solanum lycopers...    34   0.75   2
(AC018579) Homo sapiens clone RP11-3J18, *** SEQUENCING IN P...    36   0.75   6
(AC105282) Homo sapiens chromosome 18, clone RP11-452F20, co...    38   0.75   7
(AX345368) Sequence 439 from Patent WO0200928.                     32   0.75   7
(AC090081) Homo sapiens chromosome 4 clone CTD-2504H2 map 4,...    42   0.76   7
(AX345526) Sequence 597 from Patent WO0200928.                     34   0.80   6
(AC212292) Pongo abelii BAC clone CH276-50K11 from chromosom...    38   0.84   9
(AC110696) Rattus norvegicus clone CH230-106N21, WORKING DRA...    40   0.88   6
(BV601585) S215P61263RC11.T0 Clara Pan troglodytes troglodyt...    36   0.89   3
(AM463258) Vitis vinifera, whole genome shotgun sequence, co...    36   0.97   7
(CS468856) Sequence 47 from Patent EP1748080.                      34   0.98   7
(CS419333) Sequence 47 from Patent WO2006094836.                   34   0.98   7
(DU118680) KBrH102K10F Brassica rapa BAC library KBrH Brassi...    36   1.0    3
(DJ060315) Method and nucleic acids for the improved treatme...    34   1.0    5
(DD392057) Method and nucleic acids for the improved treatme...    34   1.0    5
(CS124662) Sequence 348 from Patent WO2005059172.                  34   1.0    5
(CQ807313) Sequence 763 from Patent WO2004035803.                  34   1.0    5
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    36   1.0    17
(ER548330) 1093016199932 Global-Ocean-Sampling_GS-35-01-01-1...    36   1.0    3
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome.     34   1.0    21
(AM480856) Vitis vinifera contig VV78X156725.3, whole genome...    36   1.1    3
(AC159746) Mus musculus 6 BAC RP23-437F11 (Roswell Park Canc...    48   1.1    1
(AC102000) Mus musculus chromosome 15, clone RP24-467P24, co...    48   1.1    1
(Z70271) Caenorhabditis elegans Cosmid W08D2.                      48   1.1    1
(EK147218) 1095456027897 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EJ871752) 1093018349965 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.1    1
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        48   1.1    1
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    34   1.1    21
(DX403182) GK_Sa0003L05.b1 Gossypioides kirkii WGS library G...    34   1.2    3
(BD460585) Diagnosis of Diseases Associated with Cell Cycle.       32   1.2    6
(BD452507) Diagnosis of Diseases Associated with Cell Cycle.       32   1.2    6
(AX252121) Sequence 382 from Patent WO0168911.                     32   1.2    6
(EJ750857) 1092963035422 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.2    3

>(BJ370836) Dictyostelium discoideum cDNA clone:ddc55j13, 5' end,
           single read.
          Length = 556

 Score = 1068 bits (539), Expect = 0.0
 Identities = 539/539 (100%)
 Strand = Plus / Plus


Query: 246 tgtgtagtagtggtaattcaattactccaacaccagtatcaacaggatcaccaacgacca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18  tgtgtagtagtggtaattcaattactccaacaccagtatcaacaggatcaccaacgacca 77


Query: 306 atgaagttttagttagtatttatagtgatggtttaaatagttcatttactatagtttcaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  atgaagttttagttagtatttatagtgatggtttaaatagttcatttactatagtttcaa 137


Query: 366 gtagtgaattacaagaagtaaaaacaccaacacatgggggaagtaatagtagtatatcat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtagtgaattacaagaagtaaaaacaccaacacatgggggaagtaatagtagtatatcat 197


Query: 426 ttaccacagatttttatatttttagtaaaaccaatagcatagccaatattacaataaata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttaccacagatttttatatttttagtaaaaccaatagcatagccaatattacaataaata 257


Query: 486 aacaattatttaaaactttaagaatttggatcaatccaaccacatttcaacaagatataa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aacaattatttaaaactttaagaatttggatcaatccaaccacatttcaacaagatataa 317


Query: 546 ccgtttctttaattacatcagataaggagattcatgcaataccaattaccaatttaataa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccgtttctttaattacatcagataaggagattcatgcaataccaattaccaatttaataa 377


Query: 606 atccaattaattcagtatcacgtttatcacatctacaacctaataaatggacagaagttg 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atccaattaattcagtatcacgtttatcacatctacaacctaataaatggacagaagttg 437


Query: 666 atattgatttagagtttttcccatccactgattatcgtgcaatttggttccttcaaagac 725
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atattgatttagagtttttcccatccactgattatcgtgcaatttggttccttcaaagac 497


Query: 726 atccaaatggttcagtaattttagatgatattggtttagttgttagagaaactccaaga 784
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atccaaatggttcagtaattttagatgatattggtttagttgttagagaaactccaaga 556

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,956,200,675
Number of extensions: 128543260
Number of successful extensions: 12857415
Number of sequences better than 10.0: 365
Length of query: 1632
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1608
Effective length of database: 97,308,875,965
Effective search space: 156472672551720
Effective search space used: 156472672551720
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Contig-U13094-1Q.Seq.d
         (1632 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86K93) RecName: Full=Charged multivesicular body protein 7;  &...    46   0.005
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    36   4.7
A95406(A95406) glutathione transferase (EC 2.5.1.18) Gst13 [impo...    35   7.9
AJ938182_2498(AJ938182|pid:none) Staphylococcus aureus RF122 com...    35   7.9

>(Q86K93) RecName: Full=Charged multivesicular body protein 7;
            &AC115588_4(AC115588|pid:none)
          Length = 477

 Score = 45.8 bits (107), Expect = 0.005
 Identities = 24/40 (60%), Positives = 24/40 (60%)
 Frame = +2

Query: 1505 LPIPXXXXXXXXXXXXXXXXVTSNPLPKQDENKQKTSELI 1624
            LPIP                VTSNPLPKQDENKQKTSELI
Sbjct: 438  LPIPLKNEEDELLKELESLSVTSNPLPKQDENKQKTSELI 477

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,137,508,301
Number of extensions: 39438592
Number of successful extensions: 80088
Number of sequences better than 10.0: 4
Number of HSP's gapped: 80076
Number of HSP's successfully gapped: 4
Length of query: 544
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 410
Effective length of database: 617,481,958
Effective search space: 253167602780
Effective search space used: 253167602780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.00  gvh: 0.72  alm: 0.42  top: 0.10  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: nuclear

>> prediction for Contig-U13094-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0