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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U13049-1
Contig ID Contig-U13049-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13049-1 (Contig-U13049-1Q) /CSM_Contig/Contig-U13049-1Q.Seq.d
NNNNNNNNNNAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAAT
TAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCAT
TCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGAT
TATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGT
TGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTC
ACAACAACAACAACAACAACAACAAAATATCGATCCAAATGATCCTCCAT
TCACTGAAGAATATATTAAAATCGTCTTACAAAAAAGTAAAAAGGTTAAA
TCCTTAGATTTAATCAATATCTTTAAAGGTCCACTAAAAAATCCAGATAA
CAAACCAATTTTCCTTGCAATGGTTCATAATGTTGCTCGTGTTGTTGAAG
AAAATGGTGTAAAATATTTAATTCCAAAATAAATAATAAATTATAAAAAT
AACACAAAATAAAAATAAAAATAAAAAATATTATA
Gap no gap
Contig length 535
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1977089
End point 1977531
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13049
List of clone(s) 

est1=CHK720Z,1,526
Translated Amino Acid sequence 
XXXXKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINN
GQFENNVEEFPDLNDANDNFEQVHNNNNNNNKISIQMILHSLKNILKSSYKKVKRLNP*i
*sislkvh*kiqitnqfslqwfimllvllkkmv*ni*fqnk**iikitqnknknkkyy
Translated Amino Acid sequence (All Frames) 
Frame A:
XXXXKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINN
GQFENNVEEFPDLNDANDNFEQVHNNNNNNNKISIQMILHSLKNILKSSYKKVKRLNP*i
*sislkvh*kiqitnqfslqwfimllvllkkmv*ni*fqnk**iikitqnknknkkyy


Frame B:
xxxkkfqinnnfknnklihprifnin*ii*inhskmtiimiklkn*kmmiiilminkltm
vnlkimlknfli*mmlmiilnkfttttttttkyrsk*ssih*riy*nrltkk*kg*ilrf
nqyl*rstkksr*qtnfpcngs*ccscc*rkwckifnskinnkl*k*hkikikiknii


Frame C:
xxxksfk*tttsrttn*ftrgysisiksfkstipr*ls**sn*rikr**l*f**stn*qw
si*k*c*ris*fk*c***f*tssqqqqqqqqnidpndppfteeyikivlqkskkvksldl
inifkgplknpdnkpiflamvhnvarvveengvkylipk*iinyknntk*k*k*kil
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13049-1 (Contig-U13049-1Q)
/CSM_Contig/Contig-U13049-1Q.Seq.d
         (535 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13049-1 (Contig-U13049-1Q) /CSM_Contig/Conti...   476  e-134
Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Conti...   206  2e-53
Contig-U12908-1 (Contig-U12908-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U06150-1 (Contig-U06150-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14885-1 (Contig-U14885-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11158-1 (Contig-U11158-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U13017-1 (Contig-U13017-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U13049-1 (Contig-U13049-1Q) /CSM_Contig/Contig-U13049-1Q.Seq.d
          Length = 535

 Score =  476 bits (240), Expect = e-134
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  aaaaagtttcaaataaacaacaacttcaagaacaacaaattaattcacccgaggatattc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aaaaagtttcaaataaacaacaacttcaagaacaacaaattaattcacccgaggatattc 70

                                                                       
Query: 71  aatatcaattaaatcatttaaatcaaccattccaagatgactatcataatgatcaaactg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  aatatcaattaaatcatttaaatcaaccattccaagatgactatcataatgatcaaactg 130

                                                                       
Query: 131 aagaattaaaagatgatgattataattttaatgatcaacaaattaacaatggtcaatttg 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagaattaaaagatgatgattataattttaatgatcaacaaattaacaatggtcaatttg 190

                                                                       
Query: 191 aaaataatgttgaagaatttcctgatttaaatgatgctaatgataattttgaacaagttc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaataatgttgaagaatttcctgatttaaatgatgctaatgataattttgaacaagttc 250


 Score =  212 bits (107), Expect = 3e-55
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 344 ggttaaatccttagatttaatcaatatctttaaaggtccactaaaaaatccagataacaa 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggttaaatccttagatttaatcaatatctttaaaggtccactaaaaaatccagataacaa 403

                                                          
Query: 404 accaattttccttgcaatggttcataatgttgctcgtgttgttgaag 450
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 accaattttccttgcaatggttcataatgttgctcgtgttgttgaag 450


 Score =  109 bits (55), Expect = 3e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 276 aatatcgatccaaatgatcctccattcactgaagaatatattaaaatcgtcttac 330
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aatatcgatccaaatgatcctccattcactgaagaatatattaaaatcgtcttac 330


>Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Contig-U11729-1Q.Seq.d
          Length = 862

 Score =  206 bits (104), Expect = 2e-53
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                       
Query: 344 ggttaaatccttagatttaatcaatatctttaaaggtccactaaaaaatccagataacaa 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggttaaatccttagatttaatcaatatctttaaaggtccactaaaaaatccagataacaa 818

                                                       
Query: 404 accaattttccttgcaatggttcataatgttgctcgtgttgttg 447
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 accaattttccttgcaatggttcataatgttgctcgtgttgttg 862


 Score =  109 bits (55), Expect = 3e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 276 aatatcgatccaaatgatcctccattcactgaagaatatattaaaatcgtcttac 330
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aatatcgatccaaatgatcctccattcactgaagaatatattaaaatcgtcttac 745


>Contig-U12908-1 (Contig-U12908-1Q) /CSM_Contig/Contig-U12908-1Q.Seq.d
          Length = 1528

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 27  acaacaacttcaagaacaacaaattaat 54
           |||| |||||||||||||||||||||||
Sbjct: 391 acaagaacttcaagaacaacaaattaat 418


 Score = 28.2 bits (14), Expect = 9.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 365  caatatctttaaag 378
            ||||||||||||||
Sbjct: 1210 caatatctttaaag 1223


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9491
Number of Sequences: 6905
Number of extensions: 9491
Number of successful extensions: 1276
Number of sequences better than 10.0: 431
length of query: 535
length of database: 5,674,871
effective HSP length: 16
effective length of query: 519
effective length of database: 5,564,391
effective search space: 2887918929
effective search space used: 2887918929
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 6
Homology vs DNA 
Query= Contig-U13049-1 (Contig-U13049-1Q) /CSM_Contig/Contig-U13049-1Q.Seq.d
         (535 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ382164) Dictyostelium discoideum cDNA clone:ddc43h05, 3' ...   476   0.0    3
(U25143) Dictyostelium discoideum cAMP-inducible prespore pr...   474   e-129  1
(AU062000) Dictyostelium discoideum slug cDNA, clone SLH142.      474   e-129  1
(AU061720) Dictyostelium discoideum slug cDNA, clone SLF560.      474   e-129  1
(BJ389650) Dictyostelium discoideum cDNA clone:dds19f17, 5' ...   474   e-129  1
(BJ387573) Dictyostelium discoideum cDNA clone:dds3a16, 5' e...   474   e-129  1
(BJ386712) Dictyostelium discoideum cDNA clone:dds10b07, 5' ...   474   e-129  1
(BJ385026) Dictyostelium discoideum cDNA clone:ddc51f14, 3' ...   474   e-129  1
(BJ372064) Dictyostelium discoideum cDNA clone:ddc11j04, 3' ...   474   e-129  1
(BJ363479) Dictyostelium discoideum cDNA clone:ddc26l22, 5' ...   474   e-129  1
(BJ363089) Dictyostelium discoideum cDNA clone:ddc25g01, 5' ...   474   e-129  1
(BJ362098) Dictyostelium discoideum cDNA clone:ddc20n06, 5' ...   474   e-129  1
(BJ359741) Dictyostelium discoideum cDNA clone:ddc2c08, 5' e...   474   e-129  1
(BJ359582) Dictyostelium discoideum cDNA clone:ddc15p07, 5' ...   474   e-129  1
(BJ354781) Dictyostelium discoideum cDNA clone:dda54p18, 3' ...   474   e-129  1
(BJ346891) Dictyostelium discoideum cDNA clone:dda25o09, 3' ...   474   e-129  1
(BJ330272) Dictyostelium discoideum cDNA clone:dda27o24, 5' ...   474   e-129  1
(BJ330055) Dictyostelium discoideum cDNA clone:dda27a08, 5' ...   474   e-129  1
(BJ327732) Dictyostelium discoideum cDNA clone:dda21f16, 5' ...   474   e-129  1
(BJ327484) Dictyostelium discoideum cDNA clone:dda20i17, 5' ...   474   e-129  1
(BJ326483) Dictyostelium discoideum cDNA clone:dda16k18, 5' ...   474   e-129  1
(BJ325698) Dictyostelium discoideum cDNA clone:dda1e01, 5' e...   474   e-129  1
(BJ325503) Dictyostelium discoideum cDNA clone:dda14i21, 5' ...   474   e-129  1
(BJ323497) Dictyostelium discoideum cDNA clone:dda10k21, 5' ...   474   e-129  1
(BJ328571) Dictyostelium discoideum cDNA clone:dda28n16, 5' ...   470   e-128  1
(BJ342093) Dictyostelium discoideum cDNA clone:dda9b13, 3' e...   468   e-127  1
(AU060079) Dictyostelium discoideum slug cDNA, clone SLA143.      466   e-127  1
(BJ362094) Dictyostelium discoideum cDNA clone:ddc20l06, 5' ...   462   e-126  1
(BJ388556) Dictyostelium discoideum cDNA clone:dds6l02, 5' e...   458   e-124  1
(BJ386101) Dictyostelium discoideum cDNA clone:ddc57l02, 3' ...   454   e-123  1
(BJ359069) Dictyostelium discoideum cDNA clone:ddc12m18, 5' ...   454   e-123  1
(BJ359269) Dictyostelium discoideum cDNA clone:ddc13k15, 5' ...   353   e-123  2
(BJ325274) Dictyostelium discoideum cDNA clone:dda13i15, 5' ...   446   e-121  1
(BJ384395) Dictyostelium discoideum cDNA clone:ddc49e11, 3' ...   426   e-115  1
(BJ387684) Dictyostelium discoideum cDNA clone:dds4o02, 5' e...   414   e-115  2
(BJ387415) Dictyostelium discoideum cDNA clone:dds2l09, 5' e...   402   e-108  1
(BJ402012) Dictyostelium discoideum cDNA clone:dds20l04, 3' ...   394   e-105  1
(BJ349924) Dictyostelium discoideum cDNA clone:dda38h04, 3' ...   392   e-105  1
(BJ348037) Dictyostelium discoideum cDNA clone:dda32a04, 3' ...   392   e-105  1
(BJ382636) Dictyostelium discoideum cDNA clone:ddc45l07, 3' ...   391   e-104  1
(BJ400024) Dictyostelium discoideum cDNA clone:dds8c16, 3' e...   389   e-104  1
(BJ382060) Dictyostelium discoideum cDNA clone:ddc43c21, 3' ...   389   e-104  1
(BJ387790) Dictyostelium discoideum cDNA clone:dds5c02, 5' e...   379   e-101  1
(BJ387029) Dictyostelium discoideum cDNA clone:dds12a01, 5' ...   375   1e-99  1
(BJ353756) Dictyostelium discoideum cDNA clone:dda51g11, 3' ...   375   1e-99  1
(BJ324267) Dictyostelium discoideum cDNA clone:dda5d17, 5' e...   371   2e-98  1
(BJ385263) Dictyostelium discoideum cDNA clone:ddc54j09, 3' ...   369   7e-98  1
(BJ328173) Dictyostelium discoideum cDNA clone:dda23o05, 5' ...   369   7e-98  1
(BJ382553) Dictyostelium discoideum cDNA clone:ddc45j01, 3' ...   293   8e-96  2
(BJ352303) Dictyostelium discoideum cDNA clone:dda46f08, 3' ...   361   2e-95  1
(BJ329667) Dictyostelium discoideum cDNA clone:dda25h21, 5' ...   359   7e-95  1
(BJ372859) Dictyostelium discoideum cDNA clone:ddc14g14, 3' ...   353   4e-93  1
(BJ380678) Dictyostelium discoideum cDNA clone:ddc38o19, 3' ...   293   3e-89  2
(BJ409684) Dictyostelium discoideum cDNA clone:dds42l21, 3' ...   287   2e-87  2
(BJ391137) Dictyostelium discoideum cDNA clone:dds15b09, 5' ...   315   9e-82  1
(BJ324006) Dictyostelium discoideum cDNA clone:dda4f11, 5' e...   313   4e-81  1
(BJ384679) Dictyostelium discoideum cDNA clone:ddc50h08, 3' ...   299   5e-77  1
(BJ385049) Dictyostelium discoideum cDNA clone:ddc51k14, 3' ...   297   2e-76  1
(BJ438684) Dictyostelium discoideum cDNA clone:ddv38m02, 3' ...   208   3e-76  2
(BJ385062) Dictyostelium discoideum cDNA clone:ddc51n13, 3' ...   232   4e-69  2
(BJ379771) Dictyostelium discoideum cDNA clone:ddc35n22, 3' ...   155   1e-62  2
(BJ384621) Dictyostelium discoideum cDNA clone:ddc50j05, 3' ...   232   1e-56  1
(BJ377850) Dictyostelium discoideum cDNA clone:ddc26m04, 3' ...   228   1e-55  2
(BJ391299) Dictyostelium discoideum cDNA clone:dds13g04, 5' ...   228   2e-55  1
(BJ387075) Dictyostelium discoideum cDNA clone:dds12a11, 5' ...   151   3e-32  1
(BJ387058) Dictyostelium discoideum cDNA clone:dds12k06, 5' ...   143   7e-30  1
(BJ384905) Dictyostelium discoideum cDNA clone:ddc51l04, 3' ...   143   7e-30  1
(BJ346357) Dictyostelium discoideum cDNA clone:dda30m13, 3' ...   137   5e-28  1
(BJ382367) Dictyostelium discoideum cDNA clone:ddc44c14, 3' ...   123   7e-24  1
(BJ385869) Dictyostelium discoideum cDNA clone:ddc56m07, 3' ...   121   3e-23  1
(BJ384522) Dictyostelium discoideum cDNA clone:ddc49d20, 3' ...   113   7e-21  1
(BJ384413) Dictyostelium discoideum cDNA clone:ddc49j08, 3' ...   113   7e-21  1
(BJ384355) Dictyostelium discoideum cDNA clone:ddc49l05, 3' ...   109   1e-19  1
(BJ372856) Dictyostelium discoideum cDNA clone:ddc14f13, 3' ...    76   1e-09  1
(BJ406692) Dictyostelium discoideum cDNA clone:dds36k01, 3' ...    68   3e-07  1
(BJ383444) Dictyostelium discoideum cDNA clone:ddc53e02, 3' ...    64   5e-06  1
(EK016000) 1092955234417 Global-Ocean-Sampling_GS-31-01-01-1...    52   9e-04  2
(EJ407539) 1093012107083 Global-Ocean-Sampling_GS-28-01-01-1...    56   0.001  1
(ER571463) 1093015794447 Global-Ocean-Sampling_GS-36-01-01-2...    52   0.021  1
(EJ622760) 1092963098306 Global-Ocean-Sampling_GS-29-01-01-1...    52   0.021  1
(BJ379142) Dictyostelium discoideum cDNA clone:ddc33l24, 3' ...    52   0.021  1
(AY392428) Dictyostelium discoideum DNA repair protein RAD50...    48   0.021  2
(EK057125) 1092960035240 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.082  1
(EK051498) 1092959707809 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.082  1
(CA519098) KS10020E01 KS10 Capsicum annuum cDNA, mRNA sequence.    50   0.082  1
(BJ342286) Dictyostelium discoideum cDNA clone:dda13c11, 3' ...    46   0.13   2
(CU915505) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.27   3
(AC180024) Strongylocentrotus purpuratus clone R3-23J20, WOR...    48   0.32   1
(AC179852) Strongylocentrotus purpuratus clone R3-1007J5, WO...    48   0.32   1
(AU061377) Dictyostelium discoideum slug cDNA, clone SLD862.       48   0.32   1
(BJ387728) Dictyostelium discoideum cDNA clone:dds4d18, 5' e...    48   0.32   1
(BJ362888) Dictyostelium discoideum cDNA clone:ddc23m24, 5' ...    48   0.32   1
(BJ362703) Dictyostelium discoideum cDNA clone:ddc23j01, 5' ...    48   0.32   1
(BJ362276) Dictyostelium discoideum cDNA clone:ddc21i06, 5' ...    48   0.32   1
(BJ362091) Dictyostelium discoideum cDNA clone:ddc20j06, 5' ...    48   0.32   1
(BJ361074) Dictyostelium discoideum cDNA clone:ddc9o17, 5' e...    48   0.32   1
(BJ359724) Dictyostelium discoideum cDNA clone:ddc2m02, 5' e...    48   0.32   1
(BJ359442) Dictyostelium discoideum cDNA clone:ddc14p15, 5' ...    48   0.32   1
(BJ359262) Dictyostelium discoideum cDNA clone:ddc13j14, 5' ...    48   0.32   1
(BJ358781) Dictyostelium discoideum cDNA clone:ddc11h11, 5' ...    48   0.32   1

>(BJ382164) Dictyostelium discoideum cDNA clone:ddc43h05, 3' end,
           single read.
          Length = 526

 Score =  476 bits (240), Expect(3) = 0.0
 Identities = 240/240 (100%)
 Strand = Plus / Minus


Query: 11  aaaaagtttcaaataaacaacaacttcaagaacaacaaattaattcacccgaggatattc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaaaagtttcaaataaacaacaacttcaagaacaacaaattaattcacccgaggatattc 467


Query: 71  aatatcaattaaatcatttaaatcaaccattccaagatgactatcataatgatcaaactg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aatatcaattaaatcatttaaatcaaccattccaagatgactatcataatgatcaaactg 407


Query: 131 aagaattaaaagatgatgattataattttaatgatcaacaaattaacaatggtcaatttg 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagaattaaaagatgatgattataattttaatgatcaacaaattaacaatggtcaatttg 347


Query: 191 aaaataatgttgaagaatttcctgatttaaatgatgctaatgataattttgaacaagttc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaaataatgttgaagaatttcctgatttaaatgatgctaatgataattttgaacaagttc 287

 Score =  212 bits (107), Expect(3) = 0.0
 Identities = 107/107 (100%)
 Strand = Plus / Minus


Query: 344 ggttaaatccttagatttaatcaatatctttaaaggtccactaaaaaatccagataacaa 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggttaaatccttagatttaatcaatatctttaaaggtccactaaaaaatccagataacaa 134


Query: 404 accaattttccttgcaatggttcataatgttgctcgtgttgttgaag 450
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 accaattttccttgcaatggttcataatgttgctcgtgttgttgaag 87

 Score =  109 bits (55), Expect(3) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Minus


Query: 276 aatatcgatccaaatgatcctccattcactgaagaatatattaaaatcgtcttac 330
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatcgatccaaatgatcctccattcactgaagaatatattaaaatcgtcttac 207

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 550,788,513
Number of extensions: 35222939
Number of successful extensions: 3027260
Number of sequences better than 10.0: 247
Length of query: 535
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 512
Effective length of database: 93,106,754,628
Effective search space: 47670658369536
Effective search space used: 47670658369536
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U13049-1 (Contig-U13049-1Q) /CSM_Contig/Contig-U13049-1Q.Seq.d
         (535 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   170   2e-41
AL844509_273(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.038
AL034559_18(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    40   0.049
AC105744_11(AC105744|pid:none) Oryza sativa (japonica cultivar-g...    39   0.11
(Q9SU25) RecName: Full=Transcription initiation factor IIF subun...    39   0.11
AC105744_12(AC105744|pid:none) Oryza sativa (japonica cultivar-g...    39   0.11
AC105744_10(AC105744|pid:none) Oryza sativa (japonica cultivar-g...    39   0.11
AE001362_113(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.11
AL844509_183(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.11
(B0G0Y5) RecName: Full=Myb-like protein AA;                            38   0.14
AE014185_316(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.14
AL844505_78(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    38   0.14
AL844504_150(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.19
CP000246_1573(CP000246|pid:none) Clostridium perfringens ATCC 13...    38   0.19
AL844504_47(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.24
AC117081_12(AC117081|pid:none) Dictyostelium discoideum chromoso...    37   0.24
AM910990_138(AM910990|pid:none) Plasmodium knowlesi strain H chr...    37   0.24
AL034557_42(AL034557|pid:none) Plasmodium falciparum MAL4P1.  &A...    37   0.24
(Q6XHA7) RecName: Full=Probable serine/threonine-protein kinase ...    37   0.24
AL929351_47(AL929351|pid:none) Plasmodium falciparum strain 3D7,...    37   0.24
AM454733_1(AM454733|pid:none) Vitis vinifera contig VV78X008724....    37   0.31
AL844507_33(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.32
AE014187_207(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.32
EU232172_2(EU232172|pid:none) Cucumis melo clone CM_MBa_107H02, ...    37   0.42
(Q55GK3) RecName: Full=Myb-like protein M;                             37   0.42
(Q54WH7) RecName: Full=Putative uncharacterized protein DDB_G027...    37   0.42
(Q54QP0) RecName: Full=UPF0614 protein;                                36   0.54
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    36   0.54
AE014188_317(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.54
AE014185_141(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.54
AL844506_47(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.54
AE014298_1216(AE014298|pid:none) Drosophila melanogaster chromos...    36   0.54
AL844503_62(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.54
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    36   0.71
AY162269_1(AY162269|pid:none) Dictyostelium discoideum cGMP-spec...    36   0.71
AF111943_1(AF111943|pid:none) Dictyostelium discoideum AX4 devel...    36   0.71
(Q9TX44) Protein twist.                                                35   0.93
AL844507_278(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.93
AL035475_53(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   0.93
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.93
AM910993_130(AM910993|pid:none) Plasmodium knowlesi strain H chr...    35   0.93
AY190956_2(AY190956|pid:none) Drosophila virilis clone DVIF01_06...    35   0.93
AF275723_1(AF275723|pid:none) Dictyostelium discoideum Ras guani...    35   0.93
AC117072_64(AC117072|pid:none) Dictyostelium discoideum chromoso...    35   0.93
AL844507_87(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   0.93
AE014187_302(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.93
CP000806_234(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    35   1.2
AE014187_545(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.2
AY191013_1(AY191013|pid:none) Dictyostelium discoideum autophagy...    35   1.2
CP000698_1082(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    35   1.2
AL035476_30(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    35   1.2
T28635(T28635) glutamate synthase (NADH2) (EC 1.4.1.14) - malari...    35   1.2
AC117081_30(AC117081|pid:none) Dictyostelium discoideum chromoso...    35   1.2
(Q55DL2) RecName: Full=UPF0558 protein;                                35   1.2
(Q55CC5) RecName: Full=Beclin-1-like protein A; AltName: Full=Au...    35   1.2
AE014187_647(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.2
(Q5UQT2) RecName: Full=Uncharacterized protein R335;  &AY653733_...    35   1.2
CR548612_223(CR548612|pid:none) Paramecium tetraurelia macronucl...    35   1.6
AE014188_205(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.6
AE014185_263(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.6
AP010907_4(AP010907|pid:none) Helicoverpa armigera SNPV NNg1 DNA...    35   1.6
AE014185_293(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.6
AL035477_28(AL035477|pid:none) Plasmodium falciparum MAL4P4.  &A...    35   1.6
AC116956_6(AC116956|pid:none) Dictyostelium discoideum chromosom...    35   1.6
AE014188_10(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.6
BT055879_1(BT055879|pid:none) Zea mays full-length cDNA clone ZM...    34   2.0
AL844508_102(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.1
CP000510_2651(CP000510|pid:none) Psychromonas ingrahamii 37, com...    34   2.1
FM992695_157(FM992695|pid:none) Candida dubliniensis CD36 chromo...    34   2.1
AL162596_4(AL162596|pid:none) Human DNA sequence from clone RP1-...    34   2.1
(P07476) RecName: Full=Involucrin;  &A24168(A24168) &BC046391_1(...    34   2.1
AE014188_321(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.1
FN313821_1(FN313821|pid:none) Schistosoma japonicum isolate Anhu...    34   2.1
E71616(E71616)hypothetical protein PFB0365w - malaria parasite (...    34   2.7
AC115592_2(AC115592|pid:none) Dictyostelium discoideum chromosom...    34   2.7
AP004096_24(AP004096|pid:none) Oryza sativa Japonica Group genom...    34   2.7
CP001357_2560(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    34   2.7
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
AE014187_162(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
CP001186_4748(CP001186|pid:none) Bacillus cereus G9842, complete...    34   2.7
AE001362_130(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
AE014187_261(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
AL844505_277(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
M38794_1(M38794|pid:none) Dictyostelium discoideum protein kinas...    34   2.7
AL844508_220(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
AL008970_3(AL008970|pid:none) Plasmodium falciparum MAL3P4.  &AL...    34   2.7
AC115599_36(AC115599|pid:none) Dictyostelium discoideum chromoso...    34   2.7
AL844507_17(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    34   2.7
(Q54GU4) RecName: Full=Uncharacterized protein DDB_G0289975;           34   2.7
(Q6GCI9) RecName: Full=Protein esaA;  &(Q8NYF5) RecName: Fu &BA0...    33   3.5
AL844509_650(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.5
CR548612_417(CR548612|pid:none) Paramecium tetraurelia macronucl...    33   3.5
(Q54SZ6) RecName: Full=Putative uncharacterized protein DDB_G028...    33   3.5
CP001101_1378(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    33   3.5
AL844509_611(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.5
AL031745_57(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   3.5
AJ938182_224(AJ938182|pid:none) Staphylococcus aureus RF122 comp...    33   3.5
AE014187_645(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.5
AC115598_3(AC115598|pid:none) Dictyostelium discoideum chromosom...    33   3.5
CP000107_458(CP000107|pid:none) Ehrlichia canis str. Jake, compl...    33   3.5
AC117176_48(AC117176|pid:none) Dictyostelium discoideum chromoso...    33   3.5
AE014188_477(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.5
AL844504_165(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.5
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...    33   3.5
AE001362_137(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.5
AE014187_332(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.6
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.6
(Q89B10) RecName: Full=RNA polymerase sigma factor rpoD; AltName...    33   4.6
T18403(T18403) asparagine/aspartate rich protein - malaria paras...    33   4.6
AL844509_220(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.6
CP000867_1719(CP000867|pid:none) Methanococcus maripaludis C6, c...    33   4.6
AL031745_22(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   4.6
CP000962_1012(CP000962|pid:none) Clostridium botulinum A3 str. L...    33   4.6
AL844504_65(AL844504|pid:none) Plasmodium falciparum strain 3D7,...    33   4.6
AL844504_192(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.6
FM992694_125(FM992694|pid:none) Candida dubliniensis CD36 chromo...    33   4.6
AL929357_69(AL929357|pid:none) Plasmodium falciparum strain 3D7,...    33   4.6
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    33   4.6
(Q1ZXH2) RecName: Full=Probable serine/threonine-protein kinase ...    33   4.6
AL844505_136(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.6
AL844508_227(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.6
AC117081_57(AC117081|pid:none) Dictyostelium discoideum chromoso...    33   4.6
CR548612_9(CR548612|pid:none) Paramecium tetraurelia macronuclea...    33   4.6
CR382399_52(CR382399|pid:none) Plasmodium falciparum chromosome ...    33   4.6
AY160092_1(AY160092|pid:none) Dictyostelium discoideum nucleotid...    33   4.6
(O97237) RecName: Full=GRIP and coiled-coil domain-containing pr...    33   6.0
(A7TIZ4) RecName: Full=Serine/threonine-protein kinase atg1;    ...    33   6.0
(P0C8G5) RecName: Full=Ubiquitin-conjugating enzyme E2;         ...    33   6.0
AL844507_29(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.0
AE014186_114(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.0
EU930235_1(EU930235|pid:none) Simulium vittatum clone SV-2 hypot...    33   6.0
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    33   6.0
AC116977_14(AC116977|pid:none) Dictyostelium discoideum chromoso...    33   6.0
AE014186_412(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.0
AL035476_45(AL035476|pid:none) Plasmodium falciparum MAL4P3.           33   6.0
FN357338_6(FN357338|pid:none) Schistosoma mansoni genome sequenc...    33   6.0
AL844508_64(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.0
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso...    33   6.0
AL844504_97(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.0
AL844506_72(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.0
(P0C8G4) RecName: Full=Ubiquitin-conjugating enzyme E2;         ...    33   6.0
AL844506_135(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.0
(Q54Q45) RecName: Full=Myb-like protein Z;                             33   6.0
AC116956_10(AC116956|pid:none) Dictyostelium discoideum chromoso...    33   6.0
AL844509_431(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.0
CP000964_4350(CP000964|pid:none) Klebsiella pneumoniae 342, comp...    32   7.7
(Q54UA9) RecName: Full=Probable serine/threonine-protein kinase ...    32   7.8
AE014185_144(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.8
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.8
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs...    32   7.8
AC116984_202(AC116984|pid:none) Dictyostelium discoideum chromos...    32   7.8
CP000001_4440(CP000001|pid:none) Bacillus cereus E33L, complete ...    32   7.8
AM180355_2871(AM180355|pid:none) Clostridium difficile 630 compl...    32   7.8
AL034558_29(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    32   7.8
AL035475_42(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    32   7.8
FJ406887_1(FJ406887|pid:none) Plasmodium falciparum isolate RO33...    32   7.8
AB036055_1(AB036055|pid:none) Candida albicans gene for CaRap1p,...    32   7.8
AL031745_34(AL031745|pid:none) Plasmodium falciparum DNA from MA...    32   7.8
CP000439_609(CP000439|pid:none) Francisella tularensis subsp. no...    32   7.8
T21546(T21546;T21837)hypothetical protein F36A2.13 - Caenorhabdi...    32   7.8
AE014187_607(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.8
AL844501_43(AL844501|pid:none) Plasmodium falciparum strain 3D7,...    32   7.8
AL844508_245(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.8
Z75952_1(Z75952|pid:none) Caenorhabditis elegans Cosmid F29D10, ...    32   7.8
AC116924_4(AC116924|pid:none) Dictyostelium discoideum chromosom...    32   7.8
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    32   7.8
(Q54T05) RecName: Full=Serine/threonine-protein kinase rio2;    ...    32   7.8
FJ406892_1(FJ406892|pid:none) Plasmodium falciparum isolate D6 P...    32   7.8
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.8
AL844507_164(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.8
M87278_1(M87278|pid:none) Dictyostelium discoideum adenylyl cycl...    32   7.8
(Q54F99) RecName: Full=Putative uncharacterized protein DDB_G029...    32   7.8
AL035475_18(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    32   7.8

>(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags:
           Precursor;
          Length = 850

 Score =  170 bits (431), Expect = 2e-41
 Identities = 79/80 (98%), Positives = 80/80 (100%)
 Frame = +1

Query: 13  KVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFE 192
           KVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFE
Sbjct: 476 KVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFE 535

Query: 193 NNVEEFPDLNDANDNFEQVH 252
           NNVEEFPDLNDANDNFEQV+
Sbjct: 536 NNVEEFPDLNDANDNFEQVN 555

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 559,236,588
Number of extensions: 9658879
Number of successful extensions: 55620
Number of sequences better than 10.0: 173
Number of HSP's gapped: 48908
Number of HSP's successfully gapped: 229
Length of query: 178
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 58
Effective length of database: 662,793,784
Effective search space: 38442039472
Effective search space used: 38442039472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.48  gvh: 0.14  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U13049-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0