Contig-U13035-1 |
Contig ID |
Contig-U13035-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
170 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
3021548 |
End point |
3021379 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
4 |
Link to clone list |
U13035 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 5 |
Homology vs DNA |
Query= Contig-U13035-1 (Contig-U13035-1Q) /CSM_Contig/Contig-U13035-1Q.Seq.d (170 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ397853) Dictyostelium discoideum cDNA clone:dds47l19, 5' ... 64 2e-06 1 (BJ371224) Dictyostelium discoideum cDNA clone:ddc57k05, 5' ... 64 2e-06 1 (BJ395483) Dictyostelium discoideum cDNA clone:dds39e02, 5' ... 56 4e-04 1 (BJ366940) Dictyostelium discoideum cDNA clone:ddc40d24, 5' ... 54 0.002 1 (U32466) Speyeria atlantis NADH dehydrogenase subunit 1 (ND1... 46 0.37 1 (AJ505593) Alcis repandata mitochondrion 16S rRNA gene (part... 46 0.37 1 (AJ438725) Alcis repandata mitochondrion nd1 gene (partial),... 46 0.37 1 (AJ416938) Alcis repandata mitochondrion nd1 gene (partial),... 46 0.37 1 (AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 46 0.37 1 (AP010108) Lotus japonicus genomic DNA, clone: LjT36B17, TM0... 44 1.5 1 (AZ931217) 474.dhz63d07.s1 Saccharomyces unisporus NRRL Y-15... 44 1.5 1 (ER458902) 1092963880449 Global-Ocean-Sampling_GS-35-01-01-1... 44 1.5 1 (EK313599) 1095462405543 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.5 1 (AM643026) Entamoeba dispar GSS, clone dispar9g05.q1k. 44 1.5 1 (DE915979) Macropus eugenii DNA, BAC clone: MEB1-101E04_R, 3... 44 1.5 1 (AG231925) Lotus japonicus DNA, clone:LjB22i20_r. 44 1.5 1 (DT614787) ACAH-aaa10b06.g1 Hydra_EST_UCI-10 Hydra magnipapi... 44 1.5 1 (DT611896) ACAG-aaa48f05.g1 Hydra_EST_UCI-9 Hydra magnipapil... 44 1.5 1 (DT605700) ACAH-aaa75d06.g1 Hydra_EST_UCI-10 Hydra magnipapi... 44 1.5 1 (DR435525) ACAB-aaa32c12.g1 Hydra UCI6- barcoded EST's Hydra... 44 1.5 1 (DN815451) ACAC-aab62k12.g1 Hydra EST UCI 7 Hydra magnipapil... 44 1.5 1 (CX830766) ACAC-aaa21g06.g1 Hydra EST UCI 7 Hydra magnipapil... 44 1.5 1 (EF040098) Synthetic construct Bacillus anthracis clone FLH2... 42 5.8 1 (AC155251) Mus musculus BAC clone RP24-201E19 from chromosom... 42 5.8 1 (AC110816) Mus musculus BAC clone RP23-20P15 from chromosome... 42 5.8 1 (AC200340) Pongo abelii BAC clone CH276-138E9 from chromosom... 42 5.8 1 (AC160940) Pan troglodytes BAC clone CH251-503N14 from chrom... 42 5.8 1 (AC156944) Pan troglodytes BAC clone CH251-396D8 from chromo... 42 5.8 1 (AC156806) Pan troglodytes BAC clone CH251-342H5 from chromo... 42 5.8 1 (AC091778) Papio anubis clone rp41-280n2, complete sequence. 42 5.8 1 (CS742027) Sequence 10023 from Patent WO2005083127. 42 5.8 1 (CQ519288) Sequence 51155 from Patent WO0160860. 42 5.8 1 (AR031798) Sequence 1 from patent US 5866412. 42 5.8 1 (AL445990) Human DNA sequence from clone RP11-103A6 on chrom... 42 5.8 1 (AF297093) Homo sapiens UGT1 gene locus, complete sequence. 42 5.8 1 (AC019072) Homo sapiens BAC clone RP11-289A15 from 2, comple... 42 5.8 1 (AC015819) Homo sapiens chromosome 18, clone RP11-405M12, co... 42 5.8 1 (AC106501) Rattus norvegicus clone CH230-215G2, *** SEQUENCI... 42 5.8 1 (AC106468) Rattus norvegicus clone CH230-212C19, WORKING DRA... 42 5.8 1 (CU633335) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.8 1 (AC217005) Pongo abelii chromosome 12 clone CH276-455A10, WO... 42 5.8 1 (AC194510) Colobus guereza clone CH272-417D13, WORKING DRAFT... 42 5.8 1 (AC189286) Solanum lycopersicum chromosome 5 clone C05HBa010... 42 5.8 1 (AC182647) Solanum lycopersicum chromosome 5 clone C05HBa000... 42 5.8 1 (AC171066) Macaca mulatta clone CH250-485P5, WORKING DRAFT S... 42 5.8 1 (AC015905) Homo sapiens clone RP11-44A10, WORKING DRAFT SEQU... 42 5.8 1 (ET695218) CHO_OF358xc03r1.ab1 CHO_OF Nicotiana tabacum geno... 42 5.8 1 (ET695153) CHO_OF358xc03f1.ab1 CHO_OF Nicotiana tabacum geno... 42 5.8 1 (EK121025) 1092963422600 Global-Ocean-Sampling_GS-31-01-01-1... 42 5.8 1 (ED713248) GM_WBb0061H09.r GM_WBb Glycine max genomic clone ... 42 5.8 1 (CR956763) Equus caballus GSS, BAC clone CH241-110I6, T7 end... 42 5.8 1 (B37050) HS-1042-B1-B12-MF.abi CIT Human Genomic Sperm Libra... 42 5.8 1 (BH949441) odi86c09.b1 B.oleracea002 Brassica oleracea genom... 42 5.8 1 (CX582746) TTE00022573 Amplicon Express - Conjugative Form T... 42 5.8 1 (CP000485) Bacillus thuringiensis str. Al Hakam, complete ge... 42 5.8 1 (AE017334) Bacillus anthracis str. 'Ames Ancestor', complete... 42 5.8 1 (AE017225) Bacillus anthracis str. Sterne, complete genome. 42 5.8 1 (AE016879) Bacillus anthracis str. Ames, complete genome. 42 5.8 1 (CU468818) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 30 9.8 2
>(BJ397853) Dictyostelium discoideum cDNA clone:dds47l19, 5' end, single read. Length = 169
Score = 63.9 bits (32), Expect = 2e-06 Identities = 32/32 (100%) Strand = Plus / Plus
Query: 1 aatttattttatcattaattatttagtttggg 32 |||||||||||||||||||||||||||||||| Sbjct: 1 aatttattttatcattaattatttagtttggg 32
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 63,771,662 Number of extensions: 4668862 Number of successful extensions: 1318024 Number of sequences better than 10.0: 59 Length of query: 170 Length of database: 95,242,211,685 Length adjustment: 22 Effective length of query: 148 Effective length of database: 93,199,600,587 Effective search space: 13793540886876 Effective search space used: 13793540886876 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7. 5 |
Homology vs Protein |
|
PSORT |
- |
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
2 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |