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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13034-1
Contig ID Contig-U13034-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13034-1 (Contig-U13034-1Q) /CSM_Contig/Contig-U13034-1Q.Seq.d
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAAT
ATTCAAAATGCATAAAACATCAGTTATCTTTTTGATTTCTCCAGCCTCTG
AAGAAACCAACATTCAAGATGTTGAAAAGAATGTCAAAAACATTAAAATG
GACGGTTTAACTTGGGGTGAATTCAGAAAGGAACCATTAGTTGGTAAATT
AGCTCGTCTTAGAGCATTGGCTGTTGTTGAAGAACAAAACATCAGTTGAT
GACTTAGAAATGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATAT
TGAAGCAATGTCTGAAATTTAAGAAAATTTAAATTTCTCATCCAATTAAA
ATAAAATTAAATTTAATTTGGAAATCATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAANNTTTTTTTTTTAAAAAAAAA
A
Gap no gap
Contig length 501
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3956536
End point 3956108
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 11
Link to clone list U13034
List of clone(s) 

est1=CFC832Z,1,318
est2=CHB133Z,7,326
est3=CFK326F,44,438
est4=CHP315F,63,438
est5=CFC632Z,65,318
est6=CHJ457F,78,501
est7=CHP315Z,80,382
est8=CHM879F,82,438
est9=CHM879Z,82,417
est10=CHH856F,92,438
est11=CHH856Z,152,349
Translated Amino Acid sequence 
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkik*IFKMHKTSVIFLISPASEETNIQDVEKN
VKNIKMDGLTWGEFRKEPLVGKLARLRALAVVEEQNIS**lrnenqqygfsskc*y*snv
*nlrkfkfliqlk*n*i*fgnhkkkkkkkkkkkkkkkkkxfffkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkk*nkyskcikhqlsf*flqplkkptfkmlkr
msktlkwtv*lgvnsernh*lvn*lvlehwlllknktsvddlemkinnmdlvqsvdieam
sei*enlnfssn*nkikfnleiikkkkkkkkkkkkkkkkxxfflkkk


Frame B:
kkkkkkkkkkkkkkkkkkkkkkkkkkkkknkiniqna*nisylfdfssl*rnqhsrc*ke
cqkh*ngrfnlg*iqkgtisw*isss*sigcc*rtkhqlmt*k*kstiwi*fkvlilkqc
lkfkki*ishpikiklnliwks*kkkkkkkkkkkkkkkkxfff*kk


Frame C:
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkik*IFKMHKTSVIFLISPASEETNIQDVEKN
VKNIKMDGLTWGEFRKEPLVGKLARLRALAVVEEQNIS**lrnenqqygfsskc*y*snv
*nlrkfkfliqlk*n*i*fgnhkkkkkkkkkkkkkkkkkxfffkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13034-1 (Contig-U13034-1Q)
/CSM_Contig/Contig-U13034-1Q.Seq.d
         (501 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13034-1 (Contig-U13034-1Q) /CSM_Contig/Conti...   670  0.0
Contig-U10133-1 (Contig-U10133-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11967-1 (Contig-U11967-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U10898-1 (Contig-U10898-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U04857-1 (Contig-U04857-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U01695-1 (Contig-U01695-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Conti...    34  0.14

>Contig-U13034-1 (Contig-U13034-1Q) /CSM_Contig/Contig-U13034-1Q.Seq.d
          Length = 501

 Score =  670 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 91  taaaataaatattcaaaatgcataaaacatcagttatctttttgatttctccagcctctg 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  taaaataaatattcaaaatgcataaaacatcagttatctttttgatttctccagcctctg 150

                                                                       
Query: 151 aagaaaccaacattcaagatgttgaaaagaatgtcaaaaacattaaaatggacggtttaa 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aagaaaccaacattcaagatgttgaaaagaatgtcaaaaacattaaaatggacggtttaa 210

                                                                       
Query: 211 cttggggtgaattcagaaaggaaccattagttggtaaattagctcgtcttagagcattgg 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cttggggtgaattcagaaaggaaccattagttggtaaattagctcgtcttagagcattgg 270

                                                                       
Query: 271 ctgttgttgaagaacaaaacatcagttgatgacttagaaatgaaaatcaacaatatggat 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctgttgttgaagaacaaaacatcagttgatgacttagaaatgaaaatcaacaatatggat 330

                                                                       
Query: 331 ttagttcaaagtgttgatattgaagcaatgtctgaaatttaagaaaatttaaatttctca 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttagttcaaagtgttgatattgaagcaatgtctgaaatttaagaaaatttaaatttctca 390

                                                 
Query: 391 tccaattaaaataaaattaaatttaatttggaaatcat 428
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tccaattaaaataaaattaaatttaatttggaaatcat 428


 Score = 32.2 bits (16), Expect = 0.54
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 404 aaattaaatttaattt 419
           ||||||||||||||||
Sbjct: 419 aaattaaatttaattt 404


>Contig-U10133-1 (Contig-U10133-1Q) /CSM_Contig/Contig-U10133-1Q.Seq.d
          Length = 1197

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 395 attaaaataaaattaaattta 415
           |||||||||||||||||||||
Sbjct: 55  attaaaataaaattaaattta 75


>Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Contig-U04993-1Q.Seq.d
          Length = 339

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 394 aattaaaataaaattaaat 412
           |||||||||||||||||||
Sbjct: 121 aattaaaataaaattaaat 139


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9860
Number of Sequences: 6905
Number of extensions: 9860
Number of successful extensions: 1429
Number of sequences better than 10.0: 479
length of query: 501
length of database: 5,674,871
effective HSP length: 16
effective length of query: 485
effective length of database: 5,564,391
effective search space: 2698729635
effective search space used: 2698729635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 5
Homology vs DNA 
Query= Contig-U13034-1 (Contig-U13034-1Q) /CSM_Contig/Contig-U13034-1Q.Seq.d
         (501 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ366859) Dictyostelium discoideum cDNA clone:ddc40b16, 5' ...   325   e-127  2
(BJ362313) Dictyostelium discoideum cDNA clone:ddc21d07, 5' ...   325   e-127  2
(BJ370110) Dictyostelium discoideum cDNA clone:ddc52n03, 5' ...   325   e-127  2
(BJ368744) Dictyostelium discoideum cDNA clone:ddc47n20, 5' ...   325   e-127  2
(BJ384010) Dictyostelium discoideum cDNA clone:ddc47n20, 3' ...   325   e-127  2
(BJ383193) Dictyostelium discoideum cDNA clone:ddc52n03, 3' ...   325   e-125  2
(BJ366089) Dictyostelium discoideum cDNA clone:ddc37p14, 5' ...   325   e-125  2
(BJ374085) Dictyostelium discoideum cDNA clone:ddc6o08, 3' e...   392   e-105  1
(BJ377344) Dictyostelium discoideum cDNA clone:ddc24a09, 3' ...   317   e-102  2
(BJ374089) Dictyostelium discoideum cDNA clone:ddc6p08, 3' e...   325   e-100  2
(BJ380299) Dictyostelium discoideum cDNA clone:ddc37p14, 3' ...   258   7e-90  2
(CZ292011) cp79a04.r Candida parapsilosis Random Genomic Lib...    50   0.076  1
(AC202670) Rhesus Macaque  BAC CH250-383H14 () complete sequ...    38   2.7    6
(AM438036) Vitis vinifera contig VV78X072608.7, whole genome...    44   4.6    2
(AB089314) Pagrus major gene for gonadotropin-releasing horm...    44   4.7    1
(AM483929) Vitis vinifera contig VV78X206598.7, whole genome...    44   4.7    1
(DD293979) SUSCEPTIBILITY GENE FOR HUMAN STROKE; METHODS OF ...    44   4.7    1
(AX573240) Sequence 86 from Patent WO02074992.                     44   4.7    1
(AX573239) Sequence 85 from Patent WO02074992.                     44   4.7    1
(AC091955) Homo sapiens chromosome 5 clone RP11-429P5, compl...    44   4.7    1
(AC034234) Homo sapiens chromosome 5 clone CTD-2254N19, comp...    44   4.7    1
(AY245862) Homo sapiens chromosome 5 clone RP11-281M3, *** S...    44   4.7    1
(AC167394) Bos taurus clone CH240-186N6, WORKING DRAFT SEQUE...    44   4.7    1
(AC011929) Homo sapiens clone RP11-16B11, WORKING DRAFT SEQU...    44   4.7    1
(DX538848) GH_MBb0054H13r GH_MBb Gossypium hirsutum genomic ...    44   4.7    1
(BW761778) Branchiostoma floridae cDNA, egg clone:bfeg042k14...    44   4.7    1
(BW758184) Branchiostoma floridae cDNA, egg clone:bfeg008j04...    44   4.7    1
(FC501679) CAAI6461.fwd CAAI Thalassiosira pseudonana Thaps_...    44   4.7    1

>(BJ366859) Dictyostelium discoideum cDNA clone:ddc40b16, 5' end,
           single read.
          Length = 423

 Score =  325 bits (164), Expect(2) = e-127
 Identities = 164/164 (100%)
 Strand = Plus / Plus


Query: 118 catcagttatctttttgatttctccagcctctgaagaaaccaacattcaagatgttgaaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  catcagttatctttttgatttctccagcctctgaagaaaccaacattcaagatgttgaaa 100


Query: 178 agaatgtcaaaaacattaaaatggacggtttaacttggggtgaattcagaaaggaaccat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 agaatgtcaaaaacattaaaatggacggtttaacttggggtgaattcagaaaggaaccat 160


Query: 238 tagttggtaaattagctcgtcttagagcattggctgttgttgaa 281
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tagttggtaaattagctcgtcttagagcattggctgttgttgaa 204

 Score =  163 bits (82), Expect(2) = e-127
 Identities = 82/82 (100%)
 Strand = Plus / Plus


Query: 283 aacaaaacatcagttgatgacttagaaatgaaaatcaacaatatggatttagttcaaagt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aacaaaacatcagttgatgacttagaaatgaaaatcaacaatatggatttagttcaaagt 264


Query: 343 gttgatattgaagcaatgtctg 364
           ||||||||||||||||||||||
Sbjct: 265 gttgatattgaagcaatgtctg 286

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 322,870,876
Number of extensions: 19775533
Number of successful extensions: 1662347
Number of sequences better than 10.0: 28
Length of query: 501
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 478
Effective length of database: 93,106,754,628
Effective search space: 44505028712184
Effective search space used: 44505028712184
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U13034-1 (Contig-U13034-1Q) /CSM_Contig/Contig-U13034-1Q.Seq.d
         (501 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ973180_1(AJ973180|pid:none) Strongylocentrotus purpuratus part...    54   3e-09
(P12262) RecName: Full=Elongation factor 1-beta;          Short=...    52   1e-08
EZ000417_1(EZ000417|pid:none) TSA: Culex tarsalis Ctar-253 elong...    51   2e-08
DQ673433_1(DQ673433|pid:none) Diaphorina citri putative elongati...    49   8e-08
AE013599_2501(AE013599|pid:none) Drosophila melanogaster chromos...    51   1e-07
AF172636_1(AF172636|pid:none) Drosophila melanogaster LD24492 fu...    51   1e-07
BT077960_1(BT077960|pid:none) Lepeophtheirus salmonis Pacific fo...    47   2e-06
AK340158_1(AK340158|pid:none) Acyrthosiphon pisum ACYPI006186 mR...    50   2e-06
AB180443_1(AB180443|pid:none) Plutella xylostella eEF-1 beta' mR...    49   2e-06
BT080806_1(BT080806|pid:none) Caligus clemensi clone ccle-evs-50...    42   3e-06
BT080372_1(BT080372|pid:none) Caligus clemensi clone ccle-evs-51...    42   3e-06
BT076594_1(BT076594|pid:none) Caligus rogercresseyi clone crog-e...    42   8e-06
AJ973181_1(AJ973181|pid:none) Sphaerechinus granularis mRNA for ...    47   1e-05
AY223120_1(AY223120|pid:none) Schistosoma japonicum clone ZZD141...    47   1e-05
DQ440296_1(DQ440296|pid:none) Aedes aegypti clone AET-374 elonga...    41   1e-05
AK340159_1(AK340159|pid:none) Acyrthosiphon pisum ACYPI006186 mR...    47   1e-05
AK340058_1(AK340058|pid:none) Acyrthosiphon pisum ACYPI009884 mR...    46   1e-05
AB180911_1(AB180911|pid:none) Antheraea yamamai EF-1 beta mRNA f...    50   3e-05
EF633904_1(EF633904|pid:none) Ornithodoros parkeri clone OP-323 ...    50   4e-05
EF677605_1(EF677605|pid:none) Picea sitchensis clone WS02771_J13...    50   4e-05
CP000497_541(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    44   4e-05
AB046366_1(AB046366|pid:none) Bombyx mori ef-1d mRNA for elongat...    44   5e-05
(Q9U2H9) RecName: Full=Probable elongation factor 1-beta/1-delta...    49   5e-05
EU258621_1(EU258621|pid:none) Spodoptera exigua elongation facto...    49   5e-05
AY232055_1(AY232055|pid:none) Drosophila yakuba clone yak-ad_Ef1...    49   5e-05
(O74173) RecName: Full=Elongation factor 1-beta;          Short=...    44   1e-04
CR382135_487(CR382135|pid:none) Debaryomyces hansenii strain CBS...    48   1e-04
(P29693) RecName: Full=Elongation factor 1-delta;          Short...    44   1e-04
BC068905_1(BC068905|pid:none) Xenopus laevis elongation factor-1...    44   1e-04
CR761481_1(CR761481|pid:none) Xenopus tropicalis finished cDNA, ...    43   2e-04
BT003281_1(BT003281|pid:none) Drosophila melanogaster LD01705 fu...    42   2e-04
(Q9VL18) RecName: Full=Probable elongation factor 1-delta;      ...    42   2e-04
BC088544_1(BC088544|pid:none) Xenopus tropicalis hypothetical LO...    43   2e-04
BX255896_2(BX255896|pid:none) Zebrafish DNA sequence from clone ...    43   2e-04
AE014134_1864(AE014134|pid:none) Drosophila melanogaster chromos...    42   2e-04
(P29522) RecName: Full=Elongation factor 1-beta';  &D13339_1(D13...    47   3e-04
(P32471) RecName: Full=Elongation factor 1-beta;          Short=...    47   3e-04
D14080_1(D14080|pid:none) Saccharomyces cerevisiae for elongatio...    47   3e-04
EF081828_1(EF081828|pid:none) Picea sitchensis clone WS02729_P11...    46   4e-04
AM920428_881(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    46   4e-04
AY363911_1(AY363911|pid:none) Penicillium citrinum unknown mRNA.       45   7e-04
AF246979_1(AF246979|pid:none) Echinococcus granulosus EF-1 (EF-1...    45   7e-04
BT078528_1(BT078528|pid:none) Lepeophtheirus salmonis Pacific fo...    45   0.001
BT057571_1(BT057571|pid:none) Salmo salar clone ssal-rgb2-613-38...    41   0.001
BT056491_1(BT056491|pid:none) Salmo salar clone ssal-rgb-536-214...    41   0.001
BT057305_1(BT057305|pid:none) Salmo salar clone ssal-evf-533-227...    41   0.001
BT081160_1(BT081160|pid:none) Caligus clemensi clone ccle-evs-50...    45   0.001
AC023489_22(AC023489|pid:none) Trypanosoma brucei chromosome 4 c...    45   0.001
BC071464_1(BC071464|pid:none) Danio rerio eukaryotic translation...    44   0.002
BC106340_1(BC106340|pid:none) Xenopus laevis elogation factor 1 ...    44   0.003
BT047665_1(BT047665|pid:none) Salmo salar clone ssal-evd-569-092...    44   0.003
BT047413_1(BT047413|pid:none) Salmo salar clone ssal-eve-516-020...    44   0.003
BT049035_1(BT049035|pid:none) Salmo salar clone ssal-eve-571-061...    44   0.003
AL929003_6(AL929003|pid:none) Zebrafish DNA sequence from clone ...    43   0.004
BX255896_4(BX255896|pid:none) Zebrafish DNA sequence from clone ...    43   0.004
AL929003_8(AL929003|pid:none) Zebrafish DNA sequence from clone ...    43   0.004
BX255896_5(BX255896|pid:none) Zebrafish DNA sequence from clone ...    43   0.004
BX255896_3(BX255896|pid:none) Zebrafish DNA sequence from clone ...    43   0.004
FN320498_1(FN320498|pid:none) Schistosoma japonicum isolate Anhu...    43   0.005
AJ237772_1(AJ237772|pid:none) Oryzias latipes mRNA for elongatio...    43   0.005
AC073506_4(AC073506|pid:none) Arabidopsis thaliana chromosome 1 ...    43   0.005
(Q40682) RecName: Full=Elongation factor 1-delta 2;          Sho...    43   0.005
AK314311_1(AK314311|pid:none) Homo sapiens cDNA, FLJ95068, highl...    42   0.006
BT075800_1(BT075800|pid:none) Caligus rogercresseyi clone crog-e...    42   0.006
AB169168_1(AB169168|pid:none) Macaca fascicularis testis cDNA, c...    42   0.006
S34626(S34626;S31789) translation elongation factor eEF-1 delta ...    42   0.006
BC094806_1(BC094806|pid:none) Homo sapiens eukaryotic translatio...    42   0.006
AY889946_1(AY889946|pid:none) Synthetic construct Homo sapiens c...    42   0.006
D12821_1(D12821|pid:none) Oryza sativa Japonica Group mRNA for e...    42   0.006
BT077263_1(BT077263|pid:none) Caligus rogercresseyi clone crog-e...    42   0.006
BC000678_1(BC000678|pid:none) Homo sapiens eukaryotic translatio...    42   0.006
AK010347_1(AK010347|pid:none) Mus musculus ES cells cDNA, RIKEN ...    42   0.006
BC079855_1(BC079855|pid:none) Mus musculus eukaryotic translatio...    42   0.006
BC079391_1(BC079391|pid:none) Rattus norvegicus eukaryotic trans...    42   0.006
AY892150_1(AY892150|pid:none) Synthetic construct Homo sapiens c...    42   0.008
BT082968_1(BT082968|pid:none) Anoplopoma fimbria clone afim-evh-...    42   0.008
BC168738_1(BC168738|pid:none) Rattus norvegicus eukaryotic trans...    42   0.008
AB170756_1(AB170756|pid:none) Macaca fascicularis brain cDNA clo...    42   0.008
AF029844_1(AF029844|pid:none) Mus musculus elongation factor 1-b...    42   0.008
(Q9YGQ1) RecName: Full=Elongation factor 1-beta;          Short=...    42   0.008
PDBN(1B64) MOL_ID: 1;MOL_ID: 1; MOLECULE: ELONGATION FACTOR 1-BE...    42   0.008
AY231763_1(AY231763|pid:none) Drosophila yakuba clone yak-em_eEF...    42   0.008
AY911340_1(AY911340|pid:none) Bos taurus clone IMAGE:7961479 euk...    42   0.008
CR380952_353(CR380952|pid:none) Candida glabrata strain CBS138 c...    42   0.011
(P34826) RecName: Full=Elongation factor 1-beta;          Short=...    42   0.011
AE016819_236(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    42   0.011
AB007025_1(AB007025|pid:none) Dictyostelium discoideum DdEF1b mR...    42   0.011
(Q9GRF8) RecName: Full=Elongation factor 1-beta; AltName: Full=D...    42   0.011
(P34827) RecName: Full=25 kDa elongation factor 1-beta;         ...    42   0.011
U47663_1(U47663|pid:none) Oryctolagus cuniculus elongation facto...    41   0.014
AK024550_1(AK024550|pid:none) Homo sapiens cDNA: FLJ20897 fis, c...    41   0.018
BT002990_1(BT002990|pid:none) Arabidopsis thaliana clone RAFL15-...    41   0.018
BT058403_1(BT058403|pid:none) Salmo salar clone Contig405 Elonga...    41   0.018
BT043808_1(BT043808|pid:none) Salmo salar clone HM5_1996 elongat...    41   0.018
(Q84WM9) RecName: Full=Elongation factor 1-beta 1;          Shor...    41   0.018
FM992691_396(FM992691|pid:none) Candida dubliniensis CD36 chromo...    41   0.018
EU952573_1(EU952573|pid:none) Zea mays clone 1283704 elongation ...    41   0.018
CR940347_127(CR940347|pid:none) Theileria annulata strain Ankara...    41   0.018
AK293339_1(AK293339|pid:none) Homo sapiens cDNA FLJ57946 complet...    40   0.023
BT056833_1(BT056833|pid:none) Salmo salar clone ssal-evf-503-090...    40   0.023
FJ713027_1(FJ713027|pid:none) Camellia oleifera seed ripening re...    40   0.023
AY087429_1(AY087429|pid:none) Arabidopsis thaliana clone 35337 m...    40   0.023
AJ277799_1(AJ277799|pid:none) Hordeum vulgare mRNA for putative ...    40   0.023
EF144207_1(EF144207|pid:none) Populus trichocarpa clone PX0011_D...    40   0.031
BT079335_1(BT079335|pid:none) Esox lucius clone eluc-evq-513-187...    40   0.031
AB254814_1(AB254814|pid:none) Cryptomeria japonica mRNA for puta...    40   0.040
DQ191626_1(DQ191626|pid:none) Solanum tuberosum unknown mRNA.  &...    40   0.040
EU284853_1(EU284853|pid:none) TSA: Elaeis guineensis EgEfMPOB000...    40   0.040
AM494957_81(AM494957|pid:none) Leishmania braziliensis chromosom...    40   0.040
AE017343_346(AE017343|pid:none) Cryptococcus neoformans var. neo...    40   0.040
AM494957_77(AM494957|pid:none) Leishmania braziliensis chromosom...    40   0.040
EF146238_1(EF146238|pid:none) Populus trichocarpa clone WS0116_G...    39   0.052
EU952560_1(EU952560|pid:none) Zea mays clone 1283595 elongation ...    39   0.052
BT083579_1(BT083579|pid:none) Zea mays full-length cDNA clone ZM...    39   0.052
DQ191662_1(DQ191662|pid:none) Solanum tuberosum elongation facto...    39   0.052
BT076977_1(BT076977|pid:none) Caligus rogercresseyi clone crog-e...    39   0.052
CR382132_411(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    39   0.052
BT038769_1(BT038769|pid:none) Zea mays full-length cDNA clone ZM...    39   0.052
EF148278_1(EF148278|pid:none) Populus trichocarpa x Populus delt...    39   0.052
BT076650_1(BT076650|pid:none) Caligus rogercresseyi clone crog-e...    39   0.052
AF370363_1(AF370363|pid:none) Homo sapiens FP1047 mRNA, complete...    39   0.089
EU958834_1(EU958834|pid:none) Zea mays clone 207990 elongation f...    39   0.089
AY702007_1(AY702007|pid:none) Leishmania donovani strain MHOM/IN...    38   0.12
AY227782_41(AY227782|pid:none) Bos taurus T cell receptor alpha ...    38   0.12
AM502252_405(AM502252|pid:none) Leishmania infantum chromosome 3...    38   0.12
AY677168_1(AY677168|pid:none) Leishmania major elongation factor...    38   0.12
AY763288_1(AY763288|pid:none) Leishmania guyanensis putative elo...    38   0.15
AF487263_2(AF487263|pid:none) Leptosphaeria maculans major facil...    37   0.20
BT071194_1(BT071194|pid:none) Picea sitchensis clone WS0278_J07 ...    37   0.20
BT053343_1(BT053343|pid:none) Medicago truncatula clone MTYFP_FQ...    37   0.26
CU633871_63(CU633871|pid:none) Podospora anserina genomic DNA ch...    36   0.44
JC4777(JC4777;S37102) translation elongation factor eEF-1 beta c...    36   0.44
BT053384_1(BT053384|pid:none) Medicago truncatula clone MTYFP_FQ...    35   0.75
AJ291984_1(AJ291984|pid:none) Platichthys flesus partial mRNA fo...    35   0.75
AY232133_1(AY232133|pid:none) Drosophila yakuba clone yak-ad_eEF...    34   2.2
AB002776_1(AB002776|pid:none) Entamoeba histolytica mRNA for elo...    33   3.7
CP000671_837(CP000671|pid:none) Haemophilus influenzae PittEE, c...    33   4.9
(P45201) RecName: Full=USG-1 protein homolog;  &B64123(B64123) &...    32   6.4

>AJ973180_1(AJ973180|pid:none) Strongylocentrotus purpuratus partial
           mRNA for translation elongation factor 1B alpha subunit
           (eef1Ba gene).
          Length = 191

 Score = 53.5 bits (127), Expect(2) = 3e-09
 Identities = 23/61 (37%), Positives = 41/61 (67%)
 Frame = +3

Query: 114 KTSVIFLISPASEETNIQDVEKNVKNIKMDGLTWGEFRKEPLVGKLARLRALAVVEEQNI 293
           K+SV+F + P  +ET++ D+EK V+ I  DGL WG  ++ P+   + +L+ L+ VE++ +
Sbjct: 106 KSSVLFDVKPEDDETDLGDIEKAVRAIVKDGLHWGASKRVPICYGIEKLQILSTVEDEKV 165

Query: 294 S 296
           S
Sbjct: 166 S 166

 Score = 30.0 bits (66), Expect(2) = 3e-09
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 286 KTSVDDLEMKINNMDLVQSVDIEAMSEI 369
           K SVD L+ +I   D VQSVDI A +++
Sbjct: 164 KVSVDALQEEIEEFDTVQSVDIAAFNKV 191

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 493,333,670
Number of extensions: 7651063
Number of successful extensions: 16708
Number of sequences better than 10.0: 138
Number of HSP's gapped: 16708
Number of HSP's successfully gapped: 169
Length of query: 167
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 48
Effective length of database: 666,030,343
Effective search space: 31969456464
Effective search space used: 31969456464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.94  gvh: 0.44  alm: 0.46  top: 0.17  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U13034-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 5
CF (FL, S) 3
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0