| Contig-U13025-1 |
| Contig ID |
Contig-U13025-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
183 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
5130027 |
| End point |
5129843 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U13025 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 5 |
| Homology vs DNA |
Query= Contig-U13025-1 (Contig-U13025-1Q) /CSM_Contig/Contig-U13025-1Q.Seq.d
(183 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ367307) Dictyostelium discoideum cDNA clone:ddc42o04, 5' ... 214 8e-52 1
(BJ366809) Dictyostelium discoideum cDNA clone:ddc40g11, 5' ... 161 1e-35 1
(CX078116) UCRCS08_7A11_g Parent Washington Navel Orange Cal... 36 0.079 2
(AC209107) Populus trichocarpa clone POP088-K16, complete se... 34 0.16 4
(AC151803) Solanum demissum chromosome 5 clone PGEC979H09, c... 36 0.24 4
(CR933471) Paramecium tetraurelia, Small GTPase arl8, putati... 36 0.28 2
(DX549124) GH_MBb0046E11r GH_MBb Gossypium hirsutum genomic ... 38 0.29 2
(DY285668) IC0AAA63DF12RM1 CitNFL Citrus clementina cDNA 5',... 36 0.29 2
(DX545094) GH_MBb0058D06f GH_MBb Gossypium hirsutum genomic ... 36 0.31 2
(EJ368589) 1092963714917 Global-Ocean-Sampling_GS-28-01-01-1... 32 0.33 3
(BX247872) Zebrafish DNA sequence from clone CH211-223M9. 46 0.40 1
(AM477673) Vitis vinifera, whole genome shotgun sequence, co... 46 0.40 1
(DD307105) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 46 0.40 1
(DD307079) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 46 0.40 1
(DD298569) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 46 0.40 1
(AC150155) Gallus gallus clone WAG-8J2, WORKING DRAFT SEQUEN... 46 0.40 1
(AC150059) Gallus gallus clone CH261-32I2, WORKING DRAFT SEQ... 46 0.40 1
(AC192466) Gallus gallus chromosome 28 clone CH261-34J16, **... 46 0.40 1
(AM180253) Lawsonia intracellularis PHE/MN1-00 plasmid 1. 46 0.40 1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 32 0.61 2
(AC074232) Oryza sativa chromosome 10 BAC OSJNBb0005J14 geno... 32 0.86 2
(EA687008) Sequence 65887 from patent US 7365185. 32 0.95 2
(BZ390041) EINBU52TF EI_10_12_KB Entamoeba invadens genomic ... 36 1.1 2
(BH463988) BOGTV08TR BOGT Brassica oleracea genomic clone BO... 36 1.1 2
(AC144481) Medicago truncatula clone mth2-35e10, complete se... 38 1.1 3
(EA722929) Sequence 101808 from patent US 7365185. 32 1.1 2
(BH507373) BOGQT38TR BOGQ Brassica oleracea genomic clone BO... 36 1.1 2
(AY770505) Tetrahymena thermophila cytoplasmic dynein heavy ... 40 1.3 3
(EU656112) Cobitis choii mitochondrion, complete genome. 44 1.6 1
(CR545470) Zebrafish DNA sequence from clone CH211-175E15 in... 44 1.6 1
(BX470172) Zebrafish DNA sequence from clone DKEY-3H3 in lin... 44 1.6 1
(BX255960) Zebrafish DNA sequence from clone DKEY-265E17 in ... 44 1.6 1
(AL954187) Zebrafish DNA sequence from clone CH211-69P5 in l... 44 1.6 1
(AC161480) Mus musculus chromosome 15, clone RP23-404I10, co... 44 1.6 1
(AC154856) Mus musculus BAC clone RP23-20C2 from 13, complet... 44 1.6 1
(AC154613) Mus musculus BAC clone RP23-338M12 from chromosom... 44 1.6 1
(AC124678) Mus musculus chromosome 15, clone RP24-107K17, co... 44 1.6 1
(CT826194) Pan troglodytes chromosome X clone CH251-206C06 m... 44 1.6 1
(AC206039) Pongo abelii BAC clone CH276-332M10 from chromoso... 44 1.6 1
(AC193035) Pan troglodytes BAC clone CH251-600J18 from chrom... 44 1.6 1
(CU013514) Medicago truncatula chromosome 5 clone mth4-7g23,... 44 1.6 1
(CT571260) Medicago truncatula chromosome 5 clone mth2-35p14... 44 1.6 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 44 1.6 1
(AC006414) Drosophila melanogaster, chromosome 3R, region 89... 44 1.6 1
(AL133479) Human DNA sequence from clone RP11-299F23 on chro... 44 1.6 1
(AC141748) Apis mellifera clone CH224-59E22, WORKING DRAFT S... 44 1.6 1
(AC123179) Rattus norvegicus clone CH230-189O21, *** SEQUENC... 44 1.6 1
(AC200294) Zea mays chromosome 7 clone CH201-433G15; ZMMBBc0... 44 1.6 1
(AC173532) Bos taurus clone CH240-275B22, WORKING DRAFT SEQU... 44 1.6 1
(AC019787) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 1.6 1
(EK375237) 1095469435687 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.6 1
(EK366107) 1095469398619 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.6 1
(BZ401400) EINDA92TF EI_10_12_KB Entamoeba invadens genomic ... 44 1.6 1
(AF022985) Caenorhabditis elegans cosmid T15B7, complete seq... 36 1.9 4
(AC055758) Homo sapiens 3 BAC RP11-88H10 (Roswell Park Cance... 38 1.9 3
(AM473436) Vitis vinifera contig VV78X151476.2, whole genome... 36 1.9 2
(AL670091) Mouse DNA sequence from clone RP23-232F13 on chro... 36 2.0 4
(AC132747) Rattus norvegicus clone CH230-160N23, *** SEQUENC... 34 2.4 3
(AJ859276) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 34 2.4 3
(EY508957) EST_lsal_pf_787729 lsalpf whole Lepeophtheirus sa... 34 2.6 2
(ET090077) QM0AAA14DE10FM1 CCL1 Citrus clementina genomic cl... 40 2.8 2
(AM445400) Vitis vinifera contig VV78X116117.3, whole genome... 34 2.9 3
(CR382287) Human DNA sequence from clone bP-21216K13 on chro... 32 3.0 2
(AP006292) Homo sapiens genomic DNA, chromosome 9 clone:RP11... 30 3.0 2
(CU550662) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.1 2
(AL355601) Human DNA sequence from clone RP11-445L6 on chrom... 30 3.1 2
(CR382285) Human DNA sequence from clone bP-21201H5 on chrom... 32 3.1 2
(AL162252) Human DNA sequence from clone RP11-55J24 on chrom... 32 3.1 2
(AP006209) Homo sapiens genomic DNA, chromosome 9, clone:RP1... 30 3.2 2
(AB020869) Homo sapiens genomic DNA of 9q32 anti-oncogene of... 30 3.2 2
(BH141174) Gm_UMb001_149_A12F UMN Soybean BAC Library (pECSB... 40 3.3 2
(ET730950) CHO_OF152xf15r1.ab1 CHO_OF Nicotiana tabacum geno... 34 3.3 2
(CZ545060) SRAA-aad59f03.b1 Strongyloides ratti whole genome... 40 3.6 2
(AU265600) Dictyostelium discoideum vegetative cDNA clone:VS... 32 3.7 3
(AF170073) Plasmodium falciparum sexual stage-specific prote... 36 3.8 3
(EK236735) 1095460203650 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.9 2
(CT350065) Sus scrofa genomic clone CH242-341L3, genomic sur... 32 4.1 2
(AQ747487) HS_5536_A1_A03_T7A RPCI-11 Human Male BAC Library... 30 4.1 2
(EI287741) GM_WBc0008B07.r GM_WBc Glycine max genomic clone ... 34 4.1 2
(ET074972) QM0AAB1CE03RM1 CCER1 Citrus clementina genomic cl... 32 4.1 2
(AC157893) Medicago truncatula chromosome 7 clone mth2-7m13,... 34 4.5 3
(AF300574) Diadasia piercei specimen-voucher BBSL 221414 cyt... 30 4.8 3
(AF300561) Diadasia piercei specimen-voucher BBSL 207960 cyt... 30 4.8 3
(AM485148) Vitis vinifera contig VV78X088065.3, whole genome... 40 5.4 2
(AF125971) Caenorhabditis elegans cosmid Y4C6B, complete seq... 40 6.1 3
(CU041387) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 6.2 4
(CR932985) Zebrafish DNA sequence from clone DKEY-169L5 in l... 42 6.3 1
(CR391912) Zebrafish DNA sequence from clone CH211-254P10 in... 42 6.3 1
(BX649502) Zebrafish DNA sequence from clone DKEY-204F11 in ... 42 6.3 1
(AC113486) Mus musculus chromosome 14, clone RP23-354M3, com... 42 6.3 1
(L27265) Glycine max phosphatidylinositol 3-kinase mRNA, com... 42 6.3 1
(AY678298) Lycopersicon esculentum clone 56B23 chromosome 6,... 42 6.3 1
(AM426541) Vitis vinifera contig VV78X275378.15, whole genom... 42 6.3 1
(AC216536) Populus trichocarpa clone ACSB1473-G11, complete ... 42 6.3 1
(AC188848) Phakopsora pachyrhizi clone JGIAFNA-1121C5, compl... 42 6.3 1
(DD010736) Diagnosis of known genetic Parameters within the ... 42 6.3 1
(BD054572) Sequence tag and encoded human protein. 42 6.3 1
(AX919039) Sequence 34902 from Patent EP1033401. 42 6.3 1
(AX344572) Sequence 23 from Patent WO0200932. 42 6.3 1
(AR980433) Sequence 34902 from patent US 7115416. 42 6.3 1
>(BJ367307) Dictyostelium discoideum cDNA clone:ddc42o04, 5' end,
single read.
Length = 183
Score = 214 bits (108), Expect = 8e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 aaatagtaataaaaaatttattatttcaaaactttgttggttaaaatttatattccaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatagtaataaaaaatttattatttcaaaactttgttggttaaaatttatattccaact 60
Query: 61 ctgtattctagtcaacctaatctctttgattaaattaaactttttaat 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtattctagtcaacctaatctctttgattaaattaaactttttaat 108
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 195,160,074
Number of extensions: 14295393
Number of successful extensions: 4208116
Number of sequences better than 10.0: 172
Length of query: 183
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 161
Effective length of database: 93,199,600,587
Effective search space: 15005135694507
Effective search space used: 15005135694507
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7. 5 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |