Contig-U13019-1
Contig ID Contig-U13019-1
Contig update 2002.12.18
Contig sequence
>Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Contig-U13019-1Q.Seq.d
TACAAATTATAATATCTTATCAAGTTTTTCAAATCAGTTTAAATTTAATG
TTCACTTATCTGTAGATAAAAAGGATGATGAAGCTTATTTCACTTTTAGA
TTTACTAATCAACCTCAAATTGAAACAAACATTTTATCATTTAGATCTAA
TAGAGATAAACATTTTGAAAATAATAAAAATAAACCACTAGAAATTAGTA
TAATCTCTTCAATTGTTCAGAAATTAATAATTAATAATCAATCAATACCT
CTTGGTACGATGGTTTCAAATGAATTAGAATCACTTGAATTAAATAATAT
TAAATCACCATTAGATATAGGCTCAATCCCATCATCAATAAAGGATTTAT
CCATTTATAATCCTTCAAATAGTATAGAATCATTTAAACCAGGAATGATT
CCAAATGGAGTTGAAACACTTCGTATTGATTGTAGTCAACCATTAGAAAT
TTATTCAATTCCTTCTAGTGTAAAGAGTTTACATCTCTTTAATTTAAATG
TTTCATTGATTCCAAATTTAATTCCTTATGGCGTAGAGTTCTTGTACCTT
TATAATTTTAAGAAAACTATAGAGATTGGATCCATTCCAAACTCTGTAAA
GTATTTTACAATTCATAATGGGTTTAAGTCAAGAATTAATACCTGGANNN
NNNNNN

Gap no gap
Contig length 656
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5299576
End point 5300222
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13019
List of clone(s)

est1=CHI653F,1,647
Translated Amino Acid sequence
TNYNILSSFSNQFKFNVHLSVDKKDDEAYFTFRFTNQPQIETNILSFRSNRDKHFENNKN
KPLEISIISSIVQKLIINNQSIPLGTMVSNELESLELNNIKSPLDIGSIPSSIKDLSIYN
PSNSIESFKPGMIPNGVETLRIDCSQPLEIYSIPSSVKSLHLFNLNVSLIPNLIPYGVEF
LYLYNFKKTIEIGSIPNSVKYFTIHNGFKSRINTWXXX


Translated Amino Acid sequence (All Frames)
Frame A:
ykl*ylikffksv*i*cslicr*kg**slfhf*iy*stsn*nkhfii*i**r*tf*k**k
*ttrn*ynlfncseinn**sintswydgfk*irit*ik*y*itiryrlnpiinkgfihl*
sfk*yrii*trndskws*ntsy*l*stirnlfnsf*ckeftsl*fkcfidskfnslwrrv
lvpl*f*enyrdwihsklckvfyns*wv*vkn*ylxxx


Frame B:
TNYNILSSFSNQFKFNVHLSVDKKDDEAYFTFRFTNQPQIETNILSFRSNRDKHFENNKN
KPLEISIISSIVQKLIINNQSIPLGTMVSNELESLELNNIKSPLDIGSIPSSIKDLSIYN
PSNSIESFKPGMIPNGVETLRIDCSQPLEIYSIPSSVKSLHLFNLNVSLIPNLIPYGVEF
LYLYNFKKTIEIGSIPNSVKYFTIHNGFKSRINTWXXX


Frame C:
qiiisyqvfqislnlmftyl*ikrmmklislldllinlklkqtfyhldlieinilkiiki
nh*klv*slqlfrn**liinqyllvrwfqmn*nhln*iilnhh*i*aqshhq*riypfii
lqiv*nhlnqe*fqmelkhfvlivvnh*kfiqfllv*rvyisli*mfh*fqi*flma*ss
ctfiilrkl*rldpfqtl*silqfimglsqelipgxxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13019-1 (Contig-U13019-1Q)
/CSM_Contig/Contig-U13019-1Q.Seq.d
(656 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Conti... 1283 0.0
Contig-U06141-1 (Contig-U06141-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U12238-1 (Contig-U12238-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U11005-1 (Contig-U11005-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U09815-1 (Contig-U09815-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U09430-1 (Contig-U09430-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U01574-1 (Contig-U01574-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U14414-1 (Contig-U14414-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U13926-1 (Contig-U13926-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U12376-1 (Contig-U12376-1Q) /CSM_Contig/Conti... 36 0.046

>Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Contig-U13019-1Q.Seq.d
Length = 656

Score = 1283 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Plus


Query: 1 tacaaattataatatcttatcaagtttttcaaatcagtttaaatttaatgttcacttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacaaattataatatcttatcaagtttttcaaatcagtttaaatttaatgttcacttatc 60


Query: 61 tgtagataaaaaggatgatgaagcttatttcacttttagatttactaatcaacctcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtagataaaaaggatgatgaagcttatttcacttttagatttactaatcaacctcaaat 120


Query: 121 tgaaacaaacattttatcatttagatctaatagagataaacattttgaaaataataaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaacaaacattttatcatttagatctaatagagataaacattttgaaaataataaaaa 180


Query: 181 taaaccactagaaattagtataatctcttcaattgttcagaaattaataattaataatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaaccactagaaattagtataatctcttcaattgttcagaaattaataattaataatca 240


Query: 241 atcaatacctcttggtacgatggtttcaaatgaattagaatcacttgaattaaataatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcaatacctcttggtacgatggtttcaaatgaattagaatcacttgaattaaataatat 300


Query: 301 taaatcaccattagatataggctcaatcccatcatcaataaaggatttatccatttataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaatcaccattagatataggctcaatcccatcatcaataaaggatttatccatttataa 360


Query: 361 tccttcaaatagtatagaatcatttaaaccaggaatgattccaaatggagttgaaacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccttcaaatagtatagaatcatttaaaccaggaatgattccaaatggagttgaaacact 420


Query: 421 tcgtattgattgtagtcaaccattagaaatttattcaattccttctagtgtaaagagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcgtattgattgtagtcaaccattagaaatttattcaattccttctagtgtaaagagttt 480


Query: 481 acatctctttaatttaaatgtttcattgattccaaatttaattccttatggcgtagagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acatctctttaatttaaatgtttcattgattccaaatttaattccttatggcgtagagtt 540


Query: 541 cttgtacctttataattttaagaaaactatagagattggatccattccaaactctgtaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttgtacctttataattttaagaaaactatagagattggatccattccaaactctgtaaa 600


Query: 601 gtattttacaattcataatgggtttaagtcaagaattaatacctgga 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtattttacaattcataatgggtttaagtcaagaattaatacctgga 647


>Contig-U06141-1 (Contig-U06141-1Q) /CSM_Contig/Contig-U06141-1Q.Seq.d
Length = 567

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 438 aaccattagaaatttattcaat 459
||||||||||||||||||||||
Sbjct: 457 aaccattagaaatttattcaat 478


>Contig-U12238-1 (Contig-U12238-1Q) /CSM_Contig/Contig-U12238-1Q.Seq.d
Length = 1703

Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 166 tgaaaataataaaaataaa 184
|||||||||||||||||||
Sbjct: 125 tgaaaataataaaaataaa 107


Score = 36.2 bits (18), Expect = 0.046
Identities = 21/22 (95%)
Strand = Plus / Minus


Query: 163 ttttgaaaataataaaaataaa 184
||||||||| ||||||||||||
Sbjct: 68 ttttgaaaaaaataaaaataaa 47


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,558
Number of Sequences: 6905
Number of extensions: 17558
Number of successful extensions: 2788
Number of sequences better than 10.0: 407
length of query: 656
length of database: 5,674,871
effective HSP length: 16
effective length of query: 640
effective length of database: 5,564,391
effective search space: 3561210240
effective search space used: 3561210240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 5
Homology vs DNA
Query= Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Contig-U13019-1Q.Seq.d
(656 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ366609) Dictyostelium discoideum cDNA clone:ddc39i14, 5' ... 1283 0.0 1
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 40 0.002 8
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 34 0.003 8
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 34 0.003 8
(AX344559) Sequence 10 from Patent WO0200932. 36 0.004 10
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 42 0.025 11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.036 12
(AF267914) Saccharomyces bayanus tRNA-Thr gene, partial sequ... 34 0.045 4
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.075 7
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 34 0.084 9
(DD061484) Methods and nucleic acids for the analysis of he... 34 0.091 5
(AX599046) Sequence 386 from Patent WO02077272. 34 0.091 5
(EJ598312) 1092961113734 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.10 1
(BX322581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.17 6
(AC150053) Gallus gallus clone CH261-175K22, WORKING DRAFT S... 36 0.18 9
(AC119741) Homo sapiens 3 BAC RP11-570O24 (Roswell Park Canc... 36 0.20 8
(AP009066) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 0.20 4
(AC147596) Gallus gallus BAC clone CH261-29A2 from chromosom... 38 0.23 2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 32 0.23 7
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 32 0.24 7
(CZ539280) SRAA-aad24g01.g1 Strongyloides ratti whole genome... 46 0.25 2
(AP007443) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 0.27 4
(AM454621) Vitis vinifera contig VV78X244855.2, whole genome... 34 0.28 2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.28 9
(DX524021) GH_MBb0036C07f GH_MBb Gossypium hirsutum genomic ... 36 0.29 2
(EI354410) GM_WBc0105A09.f GM_WBc Glycine max genomic clone ... 34 0.29 2
(EI354497) GM_WBc0105C07.f GM_WBc Glycine max genomic clone ... 34 0.30 2
(DH114056) Oryzias latipes Fosmid clone:GOLWFno374_h19, forw... 36 0.31 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 0.32 17
(AX392736) Sequence 26 from Patent WO0212526. 36 0.33 5
(AR707083) Sequence 26 from patent US 6933145. 36 0.33 5
(AC154196) Mus musculus BAC clone RP24-76I6 from 16, complet... 42 0.34 4
(CU861589) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1
(CU582846) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1
(BH132979) ENTOX89TF Entamoeba histolytica Sheared DNA Entam... 48 0.40 1
(AZ546220) ENTDP96TF Entamoeba histolytica Sheared DNA Entam... 48 0.40 1
(CU469561) Medicago truncatula chromosome 5 clone mte1-83f11... 42 0.45 6
(AC163745) Pan troglodytes BAC clone CH251-381N15 from chrom... 38 0.51 8
(AC161016) Pan troglodytes BAC clone CH251-347N20 from chrom... 34 0.55 7
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 32 0.55 8
(AC109233) Mus musculus chromosome 16, clone RP23-219N5, com... 42 0.57 6
(AL596342) Human DNA sequence from clone RP11-198A7 on chrom... 38 0.57 8
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 34 0.60 2
(BX248583) Blochmannia floridanus complete genome. 36 0.60 11
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.61 9
(DX561358) GH_MBb0069M04r GH_MBb Gossypium hirsutum genomic ... 34 0.61 4
(BX571804) Mouse DNA sequence from clone RP23-133K13 on chro... 40 0.64 4
(AC214419) Populus trichocarpa clone POP109-H02, complete se... 32 0.64 6
(AJ426041) Chrysomya megacephala mitochondrial NADH2 gene, C... 32 0.64 6
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.68 8
(AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c... 34 0.68 4
(EK231848) 1095460181763 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.70 2
(AX344558) Sequence 9 from Patent WO0200932. 32 0.70 9
(AQ992183) nbeb0081N14r CUGI Rice BAC Library (EcoRI) Oryza ... 38 0.73 2
(AP000873) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 36 0.73 4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.74 10
(BX248246) Zebrafish DNA sequence from clone CH211-122H15 in... 46 0.75 4
(CU628001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.76 4
(EK435524) 1095521031142 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.76 2
(ER941709) AF__Bb0069I11r AF__Bb Aquilegia formosa genomic, ... 38 0.76 3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.76 7
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.77 11
(AE015927) Clostridium tetani E88, complete genome. 40 0.78 17
(AC225272) Neofelis nebulosa clone CH87-259M20, WORKING DRAF... 34 0.82 2
(CR388059) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.82 7
(CR847888) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.83 7
(AC008361) Drosophila melanogaster, chromosome 3R, region 90... 34 0.84 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 0.85 8
(AC008362) Drosophila melanogaster, chromosome 3R, region 90... 34 0.85 2
(AC136890) Felis catus clone RP86-392E3, WORKING DRAFT SEQUE... 34 0.85 2
(AC010712) Drosophila melanogaster clone RPCI98-24N21, *** S... 34 0.86 2
(CU467076) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.87 5
(Z98551) Plasmodium falciparum MAL3P6. 34 0.87 7
(EK193776) 1095460029726 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.92 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.94 8
(AY160102) Dictyostelium discoideum nucleotide exchange fact... 34 0.95 3
(AC015296) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 0.96 2
(BH139348) ENTNL12TR Entamoeba histolytica Sheared DNA Entam... 36 0.98 2
(AZ128142) OSJNBb0086L21f CUGI Rice BAC Library (EcoRI) Oryz... 38 0.99 2
(EX315069) GQ02808.B7_I10 GQ028 - Cambium / phloem scrapping... 42 1.0 2
(ED813731) ML__Ba0085O12r ML__Ba Mimulus lewisii genomic, ge... 34 1.1 2
(CU915598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.1 6
(CL018982) CH216-4G20_RM1.1 CH216 Xenopus (Silurana) tropica... 34 1.1 2
(DN584559) 92367140 Sea Urchin primary mesenchyme cell cDNA ... 34 1.1 2
(AQ853360) nbxb0003G02r CUGI Rice BAC Library Oryza sativa J... 34 1.1 2
(AF075247) Drosophila melanogaster synapse-enriched clathrin... 38 1.1 2
(AY128498) Drosophila melanogaster RH47395 full insert cDNA. 38 1.1 2
(CU855552) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.2 6
(AM180140) Lycopersicon esculentum def gene for floral homeo... 46 1.3 2
(AL929326) Zebrafish DNA sequence from clone BUSM1-SL11 in l... 42 1.3 3
(AC184063) Populus trichocarpa clone Pop1-108K13, complete s... 32 1.4 6
(AP005291) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.5 4
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 1.5 9
(CR391937) Zebrafish DNA sequence from clone CH211-175G6 in ... 46 1.6 1
(BX649363) Zebrafish DNA sequence from clone CH211-13C3 in l... 46 1.6 1
(CT025554) Mouse DNA sequence from clone RP23-469A12 on chro... 46 1.6 1
(AE014175) Mus musculus piebald deletion region section 3 of... 46 1.6 1
(AC114410) Mus musculus chromosome 14, clone RP23-151K8, com... 46 1.6 1
(AC183796) Pan troglodytes BAC clone CH251-638K14 from chrom... 46 1.6 1
(AP010581) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 1.6 1

>(BJ366609) Dictyostelium discoideum cDNA clone:ddc39i14, 5' end,
single read.
Length = 647

Score = 1283 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Plus


Query: 1 tacaaattataatatcttatcaagtttttcaaatcagtttaaatttaatgttcacttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacaaattataatatcttatcaagtttttcaaatcagtttaaatttaatgttcacttatc 60


Query: 61 tgtagataaaaaggatgatgaagcttatttcacttttagatttactaatcaacctcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtagataaaaaggatgatgaagcttatttcacttttagatttactaatcaacctcaaat 120


Query: 121 tgaaacaaacattttatcatttagatctaatagagataaacattttgaaaataataaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaacaaacattttatcatttagatctaatagagataaacattttgaaaataataaaaa 180


Query: 181 taaaccactagaaattagtataatctcttcaattgttcagaaattaataattaataatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaaccactagaaattagtataatctcttcaattgttcagaaattaataattaataatca 240


Query: 241 atcaatacctcttggtacgatggtttcaaatgaattagaatcacttgaattaaataatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcaatacctcttggtacgatggtttcaaatgaattagaatcacttgaattaaataatat 300


Query: 301 taaatcaccattagatataggctcaatcccatcatcaataaaggatttatccatttataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaatcaccattagatataggctcaatcccatcatcaataaaggatttatccatttataa 360


Query: 361 tccttcaaatagtatagaatcatttaaaccaggaatgattccaaatggagttgaaacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccttcaaatagtatagaatcatttaaaccaggaatgattccaaatggagttgaaacact 420


Query: 421 tcgtattgattgtagtcaaccattagaaatttattcaattccttctagtgtaaagagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcgtattgattgtagtcaaccattagaaatttattcaattccttctagtgtaaagagttt 480


Query: 481 acatctctttaatttaaatgtttcattgattccaaatttaattccttatggcgtagagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acatctctttaatttaaatgtttcattgattccaaatttaattccttatggcgtagagtt 540


Query: 541 cttgtacctttataattttaagaaaactatagagattggatccattccaaactctgtaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttgtacctttataattttaagaaaactatagagattggatccattccaaactctgtaaa 600


Query: 601 gtattttacaattcataatgggtttaagtcaagaattaatacctgga 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtattttacaattcataatgggtttaagtcaagaattaatacctgga 647

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 904,073,587
Number of extensions: 61795714
Number of successful extensions: 6310158
Number of sequences better than 10.0: 380
Length of query: 656
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 633
Effective length of database: 93,106,754,628
Effective search space: 58936575679524
Effective search space used: 58936575679524
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 5
Homology vs Protein
Query= Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Contig-U13019-1Q.Seq.d
(656 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso... 101 2e-20
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906... 92 2e-17
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906... 87 4e-16
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom... 82 1e-14
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom... 79 1e-13
(Q94481) RecName: Full=FNIP repeat-containing protein cigB; 69 1e-10
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m... 69 1e-10
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom... 69 2e-10
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom... 62 1e-08
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso... 61 3e-08
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso... 58 3e-07
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso... 57 5e-07
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom... 56 1e-06
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso... 53 7e-06
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso... 52 1e-05
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso... 52 2e-05
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing... 52 2e-05
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso... 52 2e-05
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso... 48 3e-04
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso... 48 3e-04
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso... 48 3e-04
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos... 47 5e-04
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso... 47 5e-04
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos... 47 6e-04
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing... 47 6e-04
AC117081_26(AC117081|pid:none) Dictyostelium discoideum chromoso... 45 0.001
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom... 44 0.003
DQ220595_1(DQ220595|pid:none) Arabidopsis thaliana ecotype Sq8 d... 44 0.004
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso... 43 0.007
DQ220581_1(DQ220581|pid:none) Arabidopsis thaliana ecotype Ang-0... 43 0.009
AB023028_10(AB023028|pid:none) Arabidopsis thaliana genomic DNA,... 43 0.009
FM992688_643(FM992688|pid:none) Candida dubliniensis CD36 chromo... 42 0.016
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso... 41 0.035
(P22447) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 40 0.060
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom... 40 0.060
CP001472_2041(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 40 0.060
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:... 40 0.060
U34816_1(U34816|pid:none) Mycoplasma pneumoniae gyrase B (gyrB) ... 40 0.060
(P47249) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 40 0.078
AC115682_10(AC115682|pid:none) Dictyostelium discoideum chromoso... 40 0.078
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso... 39 0.10
CP000780_569(CP000780|pid:none) Candidatus Methanoregula boonei ... 39 0.10
(Q554M9) RecName: Full=FNIP repeat-containing protein DDB_G02746... 39 0.13
AC116956_26(AC116956|pid:none) Dictyostelium discoideum chromoso... 39 0.13
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740... 38 0.30
DQ377248_2(DQ377248|pid:none) Bacillus thuringiensis serovar sot... 37 0.39
EU189481_1(EU189481|pid:none) Brassica rapa cultivar TO1434 flag... 37 0.39
EU189480_1(EU189480|pid:none) Brassica oleracea cultivar KT18 fl... 37 0.39
EU189479_1(EU189479|pid:none) Brassica oleracea cultivar BI16 fl... 37 0.39
EU189482_1(EU189482|pid:none) Brassica rapa cultivar TO1441 flag... 37 0.39
EU189471_1(EU189471|pid:none) Brassica carinata flagellin-sensin... 37 0.39
AF335484_1(AF335484|pid:none) Strongylocentrotus purpuratus toll... 37 0.51
AY793350_1(AY793350|pid:none) Lycopersicon pimpinellifolium Hcr2... 37 0.66
CP000685_599(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 37 0.66
AP008207_361(AP008207|pid:none) Oryza sativa (japonica cultivar-... 37 0.66
AC115599_48(AC115599|pid:none) Dictyostelium discoideum chromoso... 37 0.66
AM463739_2(AM463739|pid:none) Vitis vinifera contig VV78X231194.... 37 0.66
AP003209_5(AP003209|pid:none) Oryza sativa Japonica Group genomi... 37 0.66
AY150843_7(AY150843|pid:none) Yersinia enterocolitica strain A12... 37 0.66
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom... 36 0.86
CP001104_1699(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 36 1.1
AL844509_169(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 36 1.1
AF408704_1(AF408704|pid:none) Lycopersicon pimpinellifolium I2C-... 36 1.1
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom... 36 1.1
CP000500_44(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso... 35 1.5
EU189477_1(EU189477|pid:none) Sinapis alba flagellin-sensing 2-l... 35 1.5
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719... 35 1.5
AL844504_165(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.5
AY380826_19(AY380826|pid:none) Lymphocystis disease virus - isol... 35 1.9
CP000679_2455(CP000679|pid:none) Caldicellulosiruptor saccharoly... 35 1.9
AC134521_27(AC134521|pid:none) Medicago truncatula clone mth2-31... 35 1.9
BX936398_3299(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 35 1.9
CP001048_3394(CP001048|pid:none) Yersinia pseudotuberculosis PB1... 35 1.9
AP008207_368(AP008207|pid:none) Oryza sativa (japonica cultivar-... 35 1.9
AF063866_240(AF063866|pid:none) Melanoplus sanguinipes entomopox... 35 2.5
BA000026_422(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 35 2.5
AM481142_2(AM481142|pid:none) Vitis vinifera contig VV78X035159.... 35 2.5
EU189472_1(EU189472|pid:none) Brassica fruticulosa flagellin-sen... 35 2.5
CR382139_734(CR382139|pid:none) Debaryomyces hansenii strain CBS... 34 3.3
AY206436_1(AY206436|pid:none) Shigella flexneri plasmid pINV_F6_... 34 3.3
CP000035_37(CP000035|pid:none) Shigella dysenteriae Sd197 plasmi... 34 3.3
A35149(A35149) ipaH protein - Shigella flexneri &M32063_1(M3206... 34 3.3
AF063866_9(AF063866|pid:none) Melanoplus sanguinipes entomopoxvi... 34 3.3
AY099820_1(AY099820|pid:none) Arabidopsis thaliana putative dise... 34 3.3
AE005174_1628(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 34 3.3
AM999887_638(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 34 4.3
CP000880_279(CP000880|pid:none) Salmonella enterica subsp. arizo... 34 4.3
FM992695_695(FM992695|pid:none) Candida dubliniensis CD36 chromo... 34 4.3
AK226709_1(AK226709|pid:none) Arabidopsis thaliana mRNA for rece... 34 4.3
EU189468_1(EU189468|pid:none) Chorispora tenella flagellin-sensi... 34 4.3
(Q9FL28) RecName: Full=LRR receptor-like serine/threonine-protei... 34 4.3
AM180355_1683(AM180355|pid:none) Clostridium difficile 630 compl... 33 5.6
AP008983_193(AP008983|pid:none) Clostridium phage c-st genomic D... 33 5.6
AK072480_1(AK072480|pid:none) Oryza sativa Japonica Group cDNA c... 33 5.6
AM462584_1(AM462584|pid:none) Vitis vinifera contig VV78X114808.... 33 5.6
CP001049_64(CP001049|pid:none) Yersinia pseudotuberculosis PB1/+... 33 5.6
BT003880_1(BT003880|pid:none) Arabidopsis thaliana clone RAFL15-... 33 5.6
T22038(T22038) hypothetical protein F40F8.8 - Caenorhabditis ele... 33 5.6
AM481878_1(AM481878|pid:none) Vitis vinifera contig VV78X011863.... 33 5.6
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso... 33 5.6
CP000721_2797(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 33 7.3
AM477141_2(AM477141|pid:none) Vitis vinifera contig VV78X035827.... 33 7.3
CP000448_2012(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 33 7.3
CP001634_1229(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c... 33 7.3
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773... 33 7.3
AF049920_1(AF049920|pid:none) Petunia x hybrida PGPS/D4 (PGPS/D4... 33 7.3
AF053995_1(AF053995|pid:none) Lycopersicon esculentum Hcr2-0B (H... 33 9.5
CP000852_454(CP000852|pid:none) Caldivirga maquilingensis IC-167... 33 9.5
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ... 33 9.5
EU189476_1(EU189476|pid:none) Thlaspi alpestre flagellin-sensing... 33 9.5
AP004342_8(AP004342|pid:none) Oryza sativa Japonica Group genomi... 33 9.5
AF063866_253(AF063866|pid:none) Melanoplus sanguinipes entomopox... 33 9.5
AE016825_3965(AE016825|pid:none) Chromobacterium violaceum ATCC ... 33 9.5
CP000849_988(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 33 9.5
AB378640_1(AB378640|pid:none) Lotus japonicus LjWRKY30 mRNA for ... 33 9.5

>AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromosome 2
map 4354771-4414991 strain AX4, complete sequence.
Length = 1849

Score = 101 bits (252), Expect = 2e-20
Identities = 63/153 (41%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Frame = +2

Query: 185 PLEISIISSIVQKLIINNQSIPLGT--MVSNELESLELNNIKSPLDIGSIPSSIKDLSIY 358
PL++ I S V+ LI+N + T ++ N +E+L++ +IK L+I SIPSS+ L +
Sbjct: 1551 PLDVGSIPSSVKSLILNKGFGRILTEGIIPNGVENLDIYDIKLQLEIKSIPSSVISLKFH 1610

Query: 359 NPSNSIESFKPGMIPNGVETLRI-DCSQPLEIYSIPSSVKSLHLF-NLNVSLIPNLIPYG 532
+ N KPG+IPNGV L+I + +PL I SIP SV L + ++ LIP++IP
Sbjct: 1611 DGFN--HDLKPGIIPNGVRNLQIQNLKKPLVIGSIPQSVNRLTINQSIQFKLIPDIIPSN 1668

Query: 533 VEFLYLYNFKKTIEIGSIPNSVKYFTIHNGFKS 631
V FLYLY+ K+ ++IGSIP++VK ++ F S
Sbjct: 1669 VNFLYLYDVKEELQIGSIPSNVKSLALNYKFNS 1701

Score = 95.5 bits (236), Expect = 1e-18
Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 6/156 (3%)
Frame = +2

Query: 188 LEISIISSIVQKLIINNQ--SIPLGTMVSNELESLELNNIKSPLDIGSIPSSIKDLSIYN 361
L+I I S V+ L +N + S L ++ + +E+L+L N+ PL GSIPSS+ L+I++
Sbjct: 1681 LQIGSIPSNVKSLALNYKFNSPLLPKIIPDGVETLDLYNVLQPLQRGSIPSSVDTLTIHD 1740

Query: 362 PSNSIESFKPGMIPNGVETLRI-DCSQPLEIYSIPSSVKSLHL---FNLNVSLIPNLIPY 529
N I + +IPN V+TL + D Q L+I SIPSSVK L L FN N+S+ +IP
Sbjct: 1741 GFNQI--LRRSIIPNSVKTLHLHDIKQNLQIGSIPSSVKKLILHDKFNQNLSV--GIIPE 1796

Query: 530 GVEFLYLYNFKKTIEIGSIPNSVKYFTIHNGFKSRI 637
GVE+L L+N + +EIGSIP S+ T F +
Sbjct: 1797 GVEYLSLHNIIQNLEIGSIPKSMLQITFEKSFDKSV 1832

Score = 94.0 bits (232), Expect = 3e-18
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Frame = +2

Query: 188 LEISIISSIVQKLIIN---NQSIPLGTMVSNELESLELNNIKSPLDIGSIPSSIKDLSIY 358
LEI I S V L + N + G ++ N + +L++ N+K PL IGSIP S+ L+I
Sbjct: 1595 LEIKSIPSSVISLKFHDGFNHDLKPG-IIPNGVRNLQIQNLKKPLVIGSIPQSVNRLTI- 1652

Query: 359 NPSNSIESFK--PGMIPNGVETLRI-DCSQPLEIYSIPSSVKSLHL-FNLNVSLIPNLIP 526
N FK P +IP+ V L + D + L+I SIPS+VKSL L + N L+P +IP
Sbjct: 1653 ---NQSIQFKLIPDIIPSNVNFLYLYDVKEELQIGSIPSNVKSLALNYKFNSPLLPKIIP 1709

Query: 527 YGVEFLYLYNFKKTIEIGSIPNSVKYFTIHNGF 625
GVE L LYN + ++ GSIP+SV TIH+GF
Sbjct: 1710 DGVETLDLYNVLQPLQRGSIPSSVDTLTIHDGF 1742

Score = 92.8 bits (229), Expect = 8e-18
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Frame = +2

Query: 188 LEISIISSIVQKLIINNQSIPLGT--MVSNELESLELNNIKSPLDIGSIPSSIKDLSIYN 361
L I I V+ LI+++ L + ++ + +++L L +IK+PLD+GSIPSS+K L +
Sbjct: 1509 LVIGNIPKTVKSLILHDSFCHLLSPGIIPDSVKTLNLYDIKAPLDVGSIPSSVKSLILNK 1568

Query: 362 PSNSIESFKPGMIPNGVETLRI-DCSQPLEIYSIPSSVKSLHLFN-LNVSLIPNLIPYGV 535
I G+IPNGVE L I D LEI SIPSSV SL + N L P +IP GV
Sbjct: 1569 GFGRI--LTEGIIPNGVENLDIYDIKLQLEIKSIPSSVISLKFHDGFNHDLKPGIIPNGV 1626

Query: 536 EFLYLYNFKKTIEIGSIPNSVKYFTIHNGFKSRI 637
L + N KK + IGSIP SV TI+ + ++
Sbjct: 1627 RNLQIQNLKKPLVIGSIPQSVNRLTINQSIQFKL 1660

Score = 92.4 bits (228), Expect = 1e-17
Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 5/161 (3%)
Frame = +2

Query: 173 NKNKPLEISIISSIVQKLIINNQSIP---LGTMVSNELESLELNNIKSPLDIGSIPSSIK 343
N KPL I I V +L IN QSI + ++ + + L L ++K L IGSIPS++K
Sbjct: 1633 NLKKPLVIGSIPQSVNRLTIN-QSIQFKLIPDIIPSNVNFLYLYDVKEELQIGSIPSNVK 1691

Query: 344 DLSIYNPSNSIESFKPGMIPNGVETLRI-DCSQPLEIYSIPSSVKSLHLFN-LNVSLIPN 517
L++ NS P +IP+GVETL + + QPL+ SIPSSV +L + + N L +
Sbjct: 1692 SLALNYKFNS--PLLPKIIPDGVETLDLYNVLQPLQRGSIPSSVDTLTIHDGFNQILRRS 1749

Query: 518 LIPYGVEFLYLYNFKKTIEIGSIPNSVKYFTIHNGFKSRIN 640
+IP V+ L+L++ K+ ++IGSIP+SVK +H+ F ++
Sbjct: 1750 IIPNSVKTLHLHDIKQNLQIGSIPSSVKKLILHDKFNQNLS 1790

Score = 48.1 bits (113), Expect = 2e-04
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2

Query: 311 LDIGSIPSSIKDLSIYNPSNSIESFKPGMIPNGVETLRIDCSQPLEIYSIPSSVKSLHLF 490
+++ I +K+L I ES K + PN + L I +IP +VKSL L
Sbjct: 1475 INLNLIGPDLKELPI-----GCESEKKIIDPNSFSIILC-----LVIGNIPKTVKSLILH 1524

Query: 491 NLNVSLI-PNLIPYGVEFLYLYNFKKTIEIGSIPNSVKYFTIHNGF 625
+ L+ P +IP V+ L LY+ K +++GSIP+SVK ++ GF
Sbjct: 1525 DSFCHLLSPGIIPDSVKTLNLYDIKAPLDVGSIPSSVKSLILNKGF 1570

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 893,294,537
Number of extensions: 16950716
Number of successful extensions: 45584
Number of sequences better than 10.0: 115
Number of HSP's gapped: 45325
Number of HSP's successfully gapped: 202
Length of query: 218
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 94
Effective length of database: 649,847,548
Effective search space: 61085669512
Effective search space used: 61085669512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.82 gvh: 0.31 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U13019-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0