Contig-U13019-1 |
Contig ID |
Contig-U13019-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
656 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
5299576 |
End point |
5300222 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U13019 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 5 |
Homology vs DNA |
Query= Contig-U13019-1 (Contig-U13019-1Q) /CSM_Contig/Contig-U13019-1Q.Seq.d (656 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ366609) Dictyostelium discoideum cDNA clone:ddc39i14, 5' ... 1283 0.0 1 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 40 0.002 8 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 34 0.003 8 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 34 0.003 8 (AX344559) Sequence 10 from Patent WO0200932. 36 0.004 10 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 42 0.025 11 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.036 12 (AF267914) Saccharomyces bayanus tRNA-Thr gene, partial sequ... 34 0.045 4 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.075 7 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 34 0.084 9 (DD061484) Methods and nucleic acids for the analysis of he... 34 0.091 5 (AX599046) Sequence 386 from Patent WO02077272. 34 0.091 5 (EJ598312) 1092961113734 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.10 1 (BX322581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.17 6 (AC150053) Gallus gallus clone CH261-175K22, WORKING DRAFT S... 36 0.18 9 (AC119741) Homo sapiens 3 BAC RP11-570O24 (Roswell Park Canc... 36 0.20 8 (AP009066) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 0.20 4 (AC147596) Gallus gallus BAC clone CH261-29A2 from chromosom... 38 0.23 2 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 32 0.23 7 (DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 32 0.24 7 (CZ539280) SRAA-aad24g01.g1 Strongyloides ratti whole genome... 46 0.25 2 (AP007443) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 0.27 4 (AM454621) Vitis vinifera contig VV78X244855.2, whole genome... 34 0.28 2 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.28 9 (DX524021) GH_MBb0036C07f GH_MBb Gossypium hirsutum genomic ... 36 0.29 2 (EI354410) GM_WBc0105A09.f GM_WBc Glycine max genomic clone ... 34 0.29 2 (EI354497) GM_WBc0105C07.f GM_WBc Glycine max genomic clone ... 34 0.30 2 (DH114056) Oryzias latipes Fosmid clone:GOLWFno374_h19, forw... 36 0.31 2 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 0.32 17 (AX392736) Sequence 26 from Patent WO0212526. 36 0.33 5 (AR707083) Sequence 26 from patent US 6933145. 36 0.33 5 (AC154196) Mus musculus BAC clone RP24-76I6 from 16, complet... 42 0.34 4 (CU861589) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1 (CU582846) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1 (BH132979) ENTOX89TF Entamoeba histolytica Sheared DNA Entam... 48 0.40 1 (AZ546220) ENTDP96TF Entamoeba histolytica Sheared DNA Entam... 48 0.40 1 (CU469561) Medicago truncatula chromosome 5 clone mte1-83f11... 42 0.45 6 (AC163745) Pan troglodytes BAC clone CH251-381N15 from chrom... 38 0.51 8 (AC161016) Pan troglodytes BAC clone CH251-347N20 from chrom... 34 0.55 7 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 32 0.55 8 (AC109233) Mus musculus chromosome 16, clone RP23-219N5, com... 42 0.57 6 (AL596342) Human DNA sequence from clone RP11-198A7 on chrom... 38 0.57 8 (AE014297) Drosophila melanogaster chromosome 3R, complete s... 34 0.60 2 (BX248583) Blochmannia floridanus complete genome. 36 0.60 11 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.61 9 (DX561358) GH_MBb0069M04r GH_MBb Gossypium hirsutum genomic ... 34 0.61 4 (BX571804) Mouse DNA sequence from clone RP23-133K13 on chro... 40 0.64 4 (AC214419) Populus trichocarpa clone POP109-H02, complete se... 32 0.64 6 (AJ426041) Chrysomya megacephala mitochondrial NADH2 gene, C... 32 0.64 6 (AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.68 8 (AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c... 34 0.68 4 (EK231848) 1095460181763 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.70 2 (AX344558) Sequence 9 from Patent WO0200932. 32 0.70 9 (AQ992183) nbeb0081N14r CUGI Rice BAC Library (EcoRI) Oryza ... 38 0.73 2 (AP000873) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 36 0.73 4 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.74 10 (BX248246) Zebrafish DNA sequence from clone CH211-122H15 in... 46 0.75 4 (CU628001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.76 4 (EK435524) 1095521031142 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.76 2 (ER941709) AF__Bb0069I11r AF__Bb Aquilegia formosa genomic, ... 38 0.76 3 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.76 7 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.77 11 (AE015927) Clostridium tetani E88, complete genome. 40 0.78 17 (AC225272) Neofelis nebulosa clone CH87-259M20, WORKING DRAF... 34 0.82 2 (CR388059) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.82 7 (CR847888) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.83 7 (AC008361) Drosophila melanogaster, chromosome 3R, region 90... 34 0.84 2 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 0.85 8 (AC008362) Drosophila melanogaster, chromosome 3R, region 90... 34 0.85 2 (AC136890) Felis catus clone RP86-392E3, WORKING DRAFT SEQUE... 34 0.85 2 (AC010712) Drosophila melanogaster clone RPCI98-24N21, *** S... 34 0.86 2 (CU467076) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.87 5 (Z98551) Plasmodium falciparum MAL3P6. 34 0.87 7 (EK193776) 1095460029726 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.92 2 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.94 8 (AY160102) Dictyostelium discoideum nucleotide exchange fact... 34 0.95 3 (AC015296) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 0.96 2 (BH139348) ENTNL12TR Entamoeba histolytica Sheared DNA Entam... 36 0.98 2 (AZ128142) OSJNBb0086L21f CUGI Rice BAC Library (EcoRI) Oryz... 38 0.99 2 (EX315069) GQ02808.B7_I10 GQ028 - Cambium / phloem scrapping... 42 1.0 2 (ED813731) ML__Ba0085O12r ML__Ba Mimulus lewisii genomic, ge... 34 1.1 2 (CU915598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.1 6 (CL018982) CH216-4G20_RM1.1 CH216 Xenopus (Silurana) tropica... 34 1.1 2 (DN584559) 92367140 Sea Urchin primary mesenchyme cell cDNA ... 34 1.1 2 (AQ853360) nbxb0003G02r CUGI Rice BAC Library Oryza sativa J... 34 1.1 2 (AF075247) Drosophila melanogaster synapse-enriched clathrin... 38 1.1 2 (AY128498) Drosophila melanogaster RH47395 full insert cDNA. 38 1.1 2 (CU855552) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.2 6 (AM180140) Lycopersicon esculentum def gene for floral homeo... 46 1.3 2 (AL929326) Zebrafish DNA sequence from clone BUSM1-SL11 in l... 42 1.3 3 (AC184063) Populus trichocarpa clone Pop1-108K13, complete s... 32 1.4 6 (AP005291) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.5 4 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 1.5 9 (CR391937) Zebrafish DNA sequence from clone CH211-175G6 in ... 46 1.6 1 (BX649363) Zebrafish DNA sequence from clone CH211-13C3 in l... 46 1.6 1 (CT025554) Mouse DNA sequence from clone RP23-469A12 on chro... 46 1.6 1 (AE014175) Mus musculus piebald deletion region section 3 of... 46 1.6 1 (AC114410) Mus musculus chromosome 14, clone RP23-151K8, com... 46 1.6 1 (AC183796) Pan troglodytes BAC clone CH251-638K14 from chrom... 46 1.6 1 (AP010581) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 1.6 1
>(BJ366609) Dictyostelium discoideum cDNA clone:ddc39i14, 5' end, single read. Length = 647
Score = 1283 bits (647), Expect = 0.0 Identities = 647/647 (100%) Strand = Plus / Plus
Query: 1 tacaaattataatatcttatcaagtttttcaaatcagtttaaatttaatgttcacttatc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tacaaattataatatcttatcaagtttttcaaatcagtttaaatttaatgttcacttatc 60
Query: 61 tgtagataaaaaggatgatgaagcttatttcacttttagatttactaatcaacctcaaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgtagataaaaaggatgatgaagcttatttcacttttagatttactaatcaacctcaaat 120
Query: 121 tgaaacaaacattttatcatttagatctaatagagataaacattttgaaaataataaaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaacaaacattttatcatttagatctaatagagataaacattttgaaaataataaaaa 180
Query: 181 taaaccactagaaattagtataatctcttcaattgttcagaaattaataattaataatca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 taaaccactagaaattagtataatctcttcaattgttcagaaattaataattaataatca 240
Query: 241 atcaatacctcttggtacgatggtttcaaatgaattagaatcacttgaattaaataatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atcaatacctcttggtacgatggtttcaaatgaattagaatcacttgaattaaataatat 300
Query: 301 taaatcaccattagatataggctcaatcccatcatcaataaaggatttatccatttataa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 taaatcaccattagatataggctcaatcccatcatcaataaaggatttatccatttataa 360
Query: 361 tccttcaaatagtatagaatcatttaaaccaggaatgattccaaatggagttgaaacact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tccttcaaatagtatagaatcatttaaaccaggaatgattccaaatggagttgaaacact 420
Query: 421 tcgtattgattgtagtcaaccattagaaatttattcaattccttctagtgtaaagagttt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tcgtattgattgtagtcaaccattagaaatttattcaattccttctagtgtaaagagttt 480
Query: 481 acatctctttaatttaaatgtttcattgattccaaatttaattccttatggcgtagagtt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 acatctctttaatttaaatgtttcattgattccaaatttaattccttatggcgtagagtt 540
Query: 541 cttgtacctttataattttaagaaaactatagagattggatccattccaaactctgtaaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 cttgtacctttataattttaagaaaactatagagattggatccattccaaactctgtaaa 600
Query: 601 gtattttacaattcataatgggtttaagtcaagaattaatacctgga 647 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gtattttacaattcataatgggtttaagtcaagaattaatacctgga 647
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 904,073,587 Number of extensions: 61795714 Number of successful extensions: 6310158 Number of sequences better than 10.0: 380 Length of query: 656 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 633 Effective length of database: 93,106,754,628 Effective search space: 58936575679524 Effective search space used: 58936575679524 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 5 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |