Contig-U02029-1
Contig ID Contig-U02029-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02029-1 (Contig-U02029-1Q) /CSM_Contig/Contig-U02029-1Q.Seq.d
AAAATACATATAAAATACACACAATGACAAAAACAGATGATATCCCAATT
GTTTTCATTGAAAAGAAAAACATTCAAGAAAAGATTCTTGAAATTGATGT
AGATAAAAAACATAAAGAAAGAATTGCAAAATCTTACGAATATATTGTTA
ATGCAGATAAAACATGTAAAGAACACCTTTTACTTCAAGAAATTTTGGAT
CAATGCTTTTTCAAACAAAAACAATCATATATGAAGAATTGTAGACCAAT
TGTTATGGAATATTTAGATAAAATTTCAAAGATGGACGAATCTCGTTTTT
AAAAAAAAAATAAATCAACAAAATGAAAAATATAATATATAATTTAAAAT
AAACAAAAAAAACAAATTAAAAAAAAATAAAAAAAAAAAAGAATAAAAG-
---------GTCGACCCCGCGTCCGCAGAAATGAAATCTGTAGGAAATCT
TTCACCGAATACTTCATTATTGTTTATTTGTGATATTCAAAGTAAATTTG
CAAATCATATATTTAAATTTAAATGGTGTTGTTAATCAATCAAAATATAT
GATGAGAGTATGTAATGAATTAAAAGTACCAATTATATTTACAGAACAAT
ATCCAAAAGGTTTAGGACATACAGTTGAAGATTTATTAAAAGAAAGAAAT
GAAAATAATCAAACTAAAATATTTGAAAAAACACTTTATTCAATGTGTAC
CAATGAAGTATTGAATCATTTAAAACAAAATCATAAAGATTTAAAATCAA
TTTTAATTACTGGGATTGAAACACATGTTTGTGTTTTACAATCAACATTA
GATTTCTTAGAGAATGGATATGATGTTCATATTCTCTCTGATGCTGTTTC
TTCAAATAATAATAATGATCGTTTAATTGCATTAGAAAGAATGAGACAAT
TCTGGTGCTTTCATTACTACTACTGAAACAATTACATTCCAATTAACTAA
AGATGCAAAACATTAAAAGTTTTAAAAGTATTGTTCCAATAACAAAACAA
AGAAGAGATGATTTAGTAGCAGATCCATCACTCTCTCTTTCAAAAATGTA
AAATAAAATTAAAATAAATAAAAAAATAAAAAAAATAANGAAAGAATTTT
TATTTCC

Gap gap included
Contig length 1097
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2625273
End point 2624244
Strand (PLUS/MINUS) MINUS
Number of clones 11
Number of EST 13
Link to clone list U02029
List of clone(s)

est1=VFA181F,1,388
est2=VSI118F,9,400
est3=VSI118Z,26,400
est4=VSI687F,30,388
est5=VSF820F,44,364
est6=VSF820Z,44,339
est7=VSI892E,401,970
est8=VSF434F,413,970
est9=VSF278F,414,920
est10=FC-IC0423E,415,568
est11=VSI678F,421,988
est12=VFA181Z,442,599
est13=CFF562Z,479,1099
Translated Amino Acid sequence
kyi*nthndknr*ypncfh*kekhsrkds*n*cr*kt*rknckilriyc*cr*nm*rtpf
tsrnfgsmlfqtktiiyeel*tncygifr*nfkdgrisflkkk*inkmkniiynlk*tkk
tn*KKIKKKKNK---

---VDPASAEMKSVGNLSPNTSLLFICDIQSKFANHIFKFKWCC*sikiydesm**ikst
nyiyrtiskrfrtys*rfikrkk*k*sn*ni*kntlfnvyq*siesfktks*rfkinfny
wd*ntclcftinirflrewi*csysl*ccffk****sfncirknetilvlsllllkqlhs
n*lkmqniksfksivpitkqrrddlvadpslslskm*nkikinkkikkixkeflf


Translated Amino Acid sequence (All Frames)
Frame A:
kihikytq*qkqmisqlfslkrktfkkrflklm*iknikkelqnltnillmqikhvkntf
yfkkfwinafsnknnhi*rivdqllwni*ikfqrwtnlvfkkkinqqnekyni*fkinkk
nklkknkkkke*k---

---VDPASAEMKSVGNLSPNTSLLFICDIQSKFANHIFKFKWCC*sikiydesm**ikst
nyiyrtiskrfrtys*rfikrkk*k*sn*ni*kntlfnvyq*siesfktks*rfkinfny
wd*ntclcftinirflrewi*csysl*ccffk****sfncirknetilvlsllllkqlhs
n*lkmqniksfksivpitkqrrddlvadpslslskm*nkikinkkikkixkeflf

Frame B:
kyi*nthndknr*ypncfh*kekhsrkds*n*cr*kt*rknckilriyc*cr*nm*rtpf
tsrnfgsmlfqtktiiyeel*tncygifr*nfkdgrisflkkk*inkmkniiynlk*tkk
tn*KKIKKKKNK---

---stprpqk*nl*eifhrilhyclfvifkvnlqiiylnlngvvnqskymmrvcnelkvp
iifteqypkglghtvedllkernennqtkifektlysmctnevlnhlkqnhkdlksilit
giethvcvlqstldflengydvhilsdavssnnnndrlialermrqfwcfhyyy*nnyip
in*rcktlkvlkvlfq*qnkeemi**qihhslfqkckiklk*ikk*kk*xknfyf

Frame C:
ntykihtmtktddipivfiekkniqekileidvdkkhkeriaksyeyivnadktckehll
lqeildqcffkqkqsymkncrpivmeyldkiskmdesrf*kknkstk*ki*yii*nkqkk
qikkk*kkkrik---

---rprvrrneicrksfteyfiivyl*ysk*icksyi*i*mvllinqni**eyvmn*kyq
lylqnniqkv*diqlkiy*kkemkiiklkylkkhfiqcvpmky*ii*nkiiki*nqf*ll
glkhmfvfynqh*is*rmdmmfifslmlflqiiimiv*lh*ke*dnsgafitttetitfq
ltkdakh*kf*kycsnnktkkr*fssrsitlsfknvk*n*nk*knkknxerifis

own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02029-1 (Contig-U02029-1Q)
/CSM_Contig/Contig-U02029-1Q.Seq.d
(1107 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02029-1 (Contig-U02029-1Q) /CSM_Contig/Conti... 1253 0.0
Contig-U08873-1 (Contig-U08873-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U09934-1 (Contig-U09934-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U05615-1 (Contig-U05615-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U01619-1 (Contig-U01619-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U01107-1 (Contig-U01107-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U14858-1 (Contig-U14858-1Q) /CSM_Contig/Conti... 36 0.078
Contig-U14423-1 (Contig-U14423-1Q) /CSM_Contig/Conti... 36 0.078
Contig-U14313-1 (Contig-U14313-1Q) /CSM_Contig/Conti... 36 0.078

>Contig-U02029-1 (Contig-U02029-1Q) /CSM_Contig/Contig-U02029-1Q.Seq.d
Length = 1107

Score = 1253 bits (632), Expect = 0.0
Identities = 632/632 (100%)
Strand = Plus / Plus


Query: 410 gtcgaccccgcgtccgcagaaatgaaatctgtaggaaatctttcaccgaatacttcatta 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtcgaccccgcgtccgcagaaatgaaatctgtaggaaatctttcaccgaatacttcatta 469


Query: 470 ttgtttatttgtgatattcaaagtaaatttgcaaatcatatatttaaatttaaatggtgt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttgtttatttgtgatattcaaagtaaatttgcaaatcatatatttaaatttaaatggtgt 529


Query: 530 tgttaatcaatcaaaatatatgatgagagtatgtaatgaattaaaagtaccaattatatt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgttaatcaatcaaaatatatgatgagagtatgtaatgaattaaaagtaccaattatatt 589


Query: 590 tacagaacaatatccaaaaggtttaggacatacagttgaagatttattaaaagaaagaaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tacagaacaatatccaaaaggtttaggacatacagttgaagatttattaaaagaaagaaa 649


Query: 650 tgaaaataatcaaactaaaatatttgaaaaaacactttattcaatgtgtaccaatgaagt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgaaaataatcaaactaaaatatttgaaaaaacactttattcaatgtgtaccaatgaagt 709


Query: 710 attgaatcatttaaaacaaaatcataaagatttaaaatcaattttaattactgggattga 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 attgaatcatttaaaacaaaatcataaagatttaaaatcaattttaattactgggattga 769


Query: 770 aacacatgtttgtgttttacaatcaacattagatttcttagagaatggatatgatgttca 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aacacatgtttgtgttttacaatcaacattagatttcttagagaatggatatgatgttca 829


Query: 830 tattctctctgatgctgtttcttcaaataataataatgatcgtttaattgcattagaaag 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tattctctctgatgctgtttcttcaaataataataatgatcgtttaattgcattagaaag 889


Query: 890 aatgagacaattctggtgctttcattactactactgaaacaattacattccaattaacta 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aatgagacaattctggtgctttcattactactactgaaacaattacattccaattaacta 949


Query: 950 aagatgcaaaacattaaaagttttaaaagtattgttccaataacaaaacaaagaagagat 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 aagatgcaaaacattaaaagttttaaaagtattgttccaataacaaaacaaagaagagat 1009


Query: 1010 gatttagtagcagatccatcactctctctttc 1041
||||||||||||||||||||||||||||||||
Sbjct: 1010 gatttagtagcagatccatcactctctctttc 1041


Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus


Query: 1 aaaatacatataaaatacacacaatgacaaaaacagatgatatcccaattgttttcattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaatacatataaaatacacacaatgacaaaaacagatgatatcccaattgttttcattg 60


Query: 61 aaaagaaaaacattcaagaaaagattcttgaaattgatgtagataaaaaacataaagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaagaaaaacattcaagaaaagattcttgaaattgatgtagataaaaaacataaagaaa 120


Query: 121 gaattgcaaaatcttacgaatatattgttaatgcagataaaacatgtaaagaacaccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattgcaaaatcttacgaatatattgttaatgcagataaaacatgtaaagaacaccttt 180


Query: 181 tacttcaagaaattttggatcaatgctttttcaaacaaaaacaatcatatatgaagaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacttcaagaaattttggatcaatgctttttcaaacaaaaacaatcatatatgaagaatt 240


Query: 241 gtagaccaattgttatggaatatttagataaaatttcaaagatggacgaatctcgttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtagaccaattgttatggaatatttagataaaatttcaaagatggacgaatctcgttttt 300


Score = 38.2 bits (19), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1086 taangaaagaatttttatttcc 1107
||||||||||||||||||||||
Sbjct: 1086 taangaaagaatttttatttcc 1107


>Contig-U08873-1 (Contig-U08873-1Q) /CSM_Contig/Contig-U08873-1Q.Seq.d
Length = 1379

Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 739 atttaaaatcaattttaattac 760
||||||||||||||||||||||
Sbjct: 978 atttaaaatcaattttaattac 999


>Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Contig-U12128-1Q.Seq.d
Length = 2238

Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 860 taataatgatcgtttaatt 878
|||||||||||||||||||
Sbjct: 1943 taataatgatcgtttaatt 1961


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,816
Number of Sequences: 6905
Number of extensions: 31816
Number of successful extensions: 4043
Number of sequences better than 10.0: 476
length of query: 1107
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1091
effective length of database: 5,564,391
effective search space: 6070750581
effective search space used: 6070750581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.13
Homology vs DNA
Query= Contig-U02029-1 (Contig-U02029-1Q) /CSM_Contig/Contig-U02029-1Q.Seq.d
(1107 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU269397) Dictyostelium discoideum vegetative cDNA clone:VS... 569 0.0 5
(AU269073) Dictyostelium discoideum vegetative cDNA clone:VS... 593 0.0 4
(AU265226) Dictyostelium discoideum vegetative cDNA clone:VS... 434 0.0 5
(AU264982) Dictyostelium discoideum vegetative cDNA clone:VS... 434 0.0 4
(BJ372443) Dictyostelium discoideum cDNA clone:ddc12k15, 3' ... 426 0.0 5
(AU269398) Dictyostelium discoideum vegetative cDNA clone:VS... 335 0.0 4
(BJ410755) Dictyostelium discoideum cDNA clone:ddv1a21, 5' e... 349 e-117 2
(AU268176) Dictyostelium discoideum vegetative cDNA clone:VS... 349 e-112 2
(AU269084) Dictyostelium discoideum vegetative cDNA clone:VS... 349 e-100 2
(AU265841) Dictyostelium discoideum vegetative cDNA clone:VS... 349 1e-91 2
(AU265840) Dictyostelium discoideum vegetative cDNA clone:VS... 349 1e-91 2
(BJ428923) Dictyostelium discoideum cDNA clone:ddv1a21, 3' e... 212 3e-56 2
(AU271592) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 176 2e-51 2
(AU268177) Dictyostelium discoideum vegetative cDNA clone:VS... 155 2e-40 2
(AU271593) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 151 3e-40 2
(CZ534995) SRAA-aac94f06.g1 Strongyloides ratti whole genome... 60 1e-05 2
(FC809434) Sr_pASP6_01a11_SP6 S. ratti mixed stage pAMP Stro... 60 2e-05 2
(BG893494) kt10b01.y2 Strongyloides ratti L1 pAMP1 v3 Chiape... 60 2e-04 1
(FC814719) Sr_pAMT7_01a11_T7 S. ratti mixed stage pAMP Stron... 60 2e-04 1
(AC198433) Pongo abelii BAC clone CH276-246K6 from chromosom... 42 9e-04 7
(ES272476) BGBV-aac54c01.b1 Snail_EST_pSMART Biomphalaria gl... 52 0.047 1
(FC858930) CAMNEP537a07 CAMNE Biomphalaria glabrata cDNA clo... 52 0.047 1
(EX003677) BGBV-aae13d09.b1 Snail_EST_pSMART Biomphalaria gl... 52 0.047 1
(EV815955) BGBV-aaf05e10.g1 Snail_EST_pSMART Biomphalaria gl... 52 0.047 1
(ES747117) BGBV-aad91b03.b1 Snail_EST_pSMART Biomphalaria gl... 52 0.047 1
(ES490384) BGBV-aad04f09.b1 Snail_EST_pSMART Biomphalaria gl... 52 0.047 1
(FP102561) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.16 6
(AC217569) Populus trichocarpa clone POP004-D09, complete se... 36 0.41 2
(AC209098) Populus trichocarpa clone POP013-K21, complete se... 36 0.41 2
(CU457787) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.42 8
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 0.44 7
(AL589740) Human DNA sequence from clone RP11-436D23 on chro... 48 0.73 1
(AC031982) Homo sapiens chromosome X clone RP11-294C4 map X,... 48 0.73 1
(CT990543) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.73 1
(AC164755) Bos taurus clone CH240-155K21, *** SEQUENCING IN ... 48 0.73 1
(AC018703) Homo sapiens chromosome 6 clone RP11-71E9, WORKIN... 48 0.73 1
(DA135163) Homo sapiens cDNA clone BRALZ2008026, 5' end, mRN... 48 0.73 1
(AC201022) Strongylocentrotus purpuratus clone R3-12H7, WORK... 38 0.80 6
(DN701124) CLJ33-G10.x1d-t SHGC-CLJ Gasterosteus aculeatus c... 42 0.81 3
(AL844509) Plasmodium falciparum chromosome 13. 38 1.0 15
(AC163060) Bos taurus clone CH240-117J22, WORKING DRAFT SEQU... 32 1.5 2
(AC223756) Bos taurus clone CH240-458K8, WORKING DRAFT SEQUE... 36 1.5 5
(DB741078) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.5 2
(AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN... 36 1.6 7
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 32 1.6 12
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 32 1.7 15
(EJ271076) 1095353016620 Global-Ocean-Sampling_GS-27-01-01-1... 36 1.9 2
(CR974469) Zebrafish DNA sequence from clone CH73-64N5 in li... 34 2.3 8
(DC230629) Plasmodium berghei strain ANKA cDNA clone:SG01926... 36 2.3 2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 36 2.6 19
(AC168446) Strongylocentrotus purpuratus clone R3-39C13, WOR... 36 2.7 7
(FG668057) G1143P32FO21.T0 Anolis carolinensis pooled normal... 42 2.8 2
(AL671853) Mouse DNA sequence from clone RP23-275N2 on chrom... 46 2.9 1
(AC159709) Mus musculus 10 BAC RP23-136O17 (Roswell Park Can... 46 2.9 1
(AC158803) Mus musculus 10 BAC RP24-186E11 (Roswell Park Can... 46 2.9 1
(AC113979) Mus musculus chromosome 12, clone RP23-478I20, co... 46 2.9 1
(AC113475) Mus musculus chromosome 12, clone RP23-304B1, com... 46 2.9 1
(AC194766) Pan troglodytes BAC clone CH251-300K24 from chrom... 46 2.9 1
(AC187733) Pan troglodytes BAC clone CH251-434D23 from chrom... 46 2.9 1
(BC134559) Bos taurus zinc finger, RAN-binding domain contai... 46 2.9 1
(AC012022) Homo sapiens 3 BAC RP11-117L15 (Roswell Park Canc... 46 2.9 1
(AC010510) Homo sapiens chromosome 19 clone LLNLF-191G6, com... 46 2.9 1
(AC008994) Homo sapiens chromosome 19 clone LLNLR-232F9, com... 46 2.9 1
(AC158223) Mus musculus chromosome 7 clone RP23-182F4 map 7,... 46 2.9 1
(FP067359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.9 1
(AC068498) Homo sapiens chromosome 3 clone RP11-781A2 map 3p... 46 2.9 1
(AC231508) Oryza minuta clone OM__Ba0091E07, *** SEQUENCING ... 46 2.9 1
(AC231502) Oryza minuta clone OM__Ba0161M03, *** SEQUENCING ... 46 2.9 1
(AC220991) Oryza officinalis clone OO__Ba0057H11, *** SEQUEN... 46 2.9 1
(AC216930) Oryza officinalis clone OO__Ba0053F14, *** SEQUEN... 46 2.9 1
(AC173517) Bos taurus clone CH240-309H17, WORKING DRAFT SEQU... 46 2.9 1
(AC167677) Bos taurus clone CH240-196D24, WORKING DRAFT SEQU... 46 2.9 1
(AC016365) Mus musculus clone RP23-450A18, WORKING DRAFT SEQ... 46 2.9 1
(ER873151) MUGQ_CH252P261G14Sp6_CN535_057 CHORI-252 Vervet M... 46 2.9 1
(ER524777) 1093015623975 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.9 1
(EJ263313) 1095349057547 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.9 1
(EJ034068) 1095454063766 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.9 1
(CE829930) tigr-gss-dog-17000332002189 Dog Library Canis lup... 46 2.9 1
(EE369255) LB029109.CR_P06 GC_BGC-29 Bos taurus cDNA clone I... 46 2.9 1
(DV880303) LB02612.CR_M01 GC_BGC-26 Bos taurus cDNA clone IM... 46 2.9 1
(DV875642) LB02527.CR_P23 GC_BGC-25 Bos taurus cDNA clone IM... 46 2.9 1
(DV831651) LB01920.CR_E10 GC_BGC-19 Bos taurus cDNA clone IM... 46 2.9 1
(DV819864) LB01730.CR.1_G08 GC_BGC-17 Bos taurus cDNA clone ... 46 2.9 1
(DV783987) CL__02_R_T3___J22_T_056 Bos taurus CF-24-HW liver... 46 2.9 1
(DT810292) LB01611.CR_G03 GC_BGC-16 Bos taurus cDNA clone IM... 46 2.9 1
(DN302134) PL04024B2C11 cDNA from sexually mature hermaphodi... 46 2.9 1
(DN300770) PL04020A2F02 cDNA from sexually mature hermaphodi... 46 2.9 1
(CX950778) UMC-bcl_0B02-030-f11 Day 14 CL from a pregnant an... 46 2.9 1
(CN788417) 4122753 BARC 8BOV Bos taurus cDNA clone 8BOV_27D0... 46 2.9 1
(CN433532) BE030002B20C11 BE03 Normalized and Subtracted bov... 46 2.9 1
(CB432345) 608506 MARC 6BOV Bos taurus cDNA 3', mRNA sequence. 46 2.9 1
(BM364070) BS300001000A12 Subtracted Lewin Cattle Spleen Bos... 46 2.9 1
(BB587901) Mus musculus 6 days neonate skin cDNA, RIKEN full... 46 2.9 1
(FC634572) CAXT932.fwd CAXT Lottia gigantea from mantle Lott... 46 2.9 1
(FC634571) CAXT932.rev CAXT Lottia gigantea from mantle Lott... 46 2.9 1
(FC627603) CAXT5631.fwd CAXT Lottia gigantea from mantle Lot... 46 2.9 1
(FC627602) CAXT5631.rev CAXT Lottia gigantea from mantle Lot... 46 2.9 1
(EY652939) CS00-C1-100-038-G11-CT.F Sweet orange leaf, green... 46 2.9 1
(EV621432) LB01436.CR.1_G17 GC_BGC-14 Bos taurus cDNA clone ... 46 2.9 1
(AC013737) Homo sapiens chromosome 10 clone RP11-313B15, com... 42 2.9 5
(AC184603) Strongylocentrotus purpuratus clone R3-3047A14, W... 40 3.0 5
(AC119134) Rattus norvegicus clone CH230-423E5, *** SEQUENCI... 42 3.3 8
(AC151933) Otolemur garnettii clone CH256-456D4, WORKING DRA... 40 3.5 7
(BX530060) Zebrafish DNA sequence from clone DKEY-283F16 in ... 36 3.7 8
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 3.8 12
(AM459301) Vitis vinifera, whole genome shotgun sequence, co... 38 4.1 2
(BX323022) Zebrafish DNA sequence from clone DKEYP-77C1 in l... 36 4.1 8
(AC197647) Nomascus leucogenys leucogenys clone CH271-359I12... 42 4.2 4
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 30 4.2 11
(FP016236) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 4.2 6
(AC223770) Bos taurus clone CH240-458F19, WORKING DRAFT SEQU... 38 4.3 4
(AJ408770) Homo sapiens GSS, clone BAC RPCI-11 422K10 T7. 42 4.3 2
(AP009096) Marchantia polymorpha genomic DNA, chromosome Y, ... 32 4.5 2
(EY603485) CAWU7060.rev CAWU Capitella sp. I ECS-2004 Primar... 34 4.5 3
(DQ158858) Bigelowiella natans nucleomorph chromosome 3, com... 40 4.6 6
(AL034559) Plasmodium falciparum MAL3P7. 34 4.7 12
(AC226823) Solanum lycopersicum chromosome 5 clone C05HBa006... 42 5.2 7
(EK364841) 1095469392293 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.2 3
(AC073344) Homo sapiens BAC clone RP11-628B17 from 4, comple... 32 5.4 2
(AC192128) Pan troglodytes BAC clone CH251-610J6 from chromo... 32 5.4 2
(AC093592) Homo sapiens BAC clone RP11-50L21 from 4, complet... 32 5.4 2
(AC016032) Homo sapiens clone RP11-13N4, WORKING DRAFT SEQUE... 32 5.4 2
(AC025990) Homo sapiens chromosome 1 clone RP11-277A12 map 1... 32 5.4 2
(AC099796) Homo sapiens chromosome 1 clone RP5-866L20, compl... 32 5.5 2
(AC022575) Homo sapiens clone RP11-13M4, LOW-PASS SEQUENCE S... 32 5.5 2
(AC109539) Rattus norvegicus clone CH230-253H11, *** SEQUENC... 38 5.6 6
(AC162686) Bos taurus clone CH240-55N13, WORKING DRAFT SEQUE... 42 5.6 3
(DB770853) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.2 2
(DB762428) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.2 2
(DB766842) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 2
(DB758925) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 2
(DB780394) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.6 2
(AM469257) Vitis vinifera contig VV78X238785.11, whole genom... 34 6.6 2
(DB764519) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.7 2
(CR381560) Zebrafish DNA sequence from clone CH211-172L8 in ... 40 6.7 6
(AC159741) Mus musculus BAC clone RP23-178B21 from chromosom... 38 6.9 5
(DB773193) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.9 2
(AL671966) Human DNA sequence from clone RP11-544L8 on chrom... 36 7.1 6
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 7.3 8
(DN558153) Ls_af1_33f04_T7 Litomosoides sigmodontis adult fe... 42 7.4 2
(Y13767) Apis mellifera mitochondrial tRNA-Leu gene. 42 7.5 2
(BE711292) RC6-HT0678-280700-015-A05 HT0678 Homo sapiens cDN... 32 7.6 2
(CU855629) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 8.1 10
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 32 8.1 17
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 36 8.4 6
(AC166639) Solanum demissum chromosome 11 clone PGEC10I24, *... 38 8.7 5
(BK006346) TPA_exp: Apis mellifera sex determination locus, ... 34 8.8 5
(EK057891) 1092960046177 Global-Ocean-Sampling_GS-31-01-01-1... 36 9.0 2
(GH707378) Ap-BrOvp-VI-E5 Ap-BrOvp Acyrthosiphon pisum cDNA ... 38 9.3 2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 32 9.7 9
(AC119309) Rattus norvegicus clone CH230-180D24, WORKING DRA... 42 9.9 7
(CT390111) Sus scrofa genomic clone PigE-43A4, genomic surve... 38 10.0 2

>(AU269397) Dictyostelium discoideum vegetative cDNA clone:VSI892,
5' end single read.
Length = 567

Score = 569 bits (287), Expect(5) = 0.0
Identities = 287/287 (100%)
Strand = Plus / Plus


Query: 682 cactttattcaatgtgtaccaatgaagtattgaatcatttaaaacaaaatcataaagatt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cactttattcaatgtgtaccaatgaagtattgaatcatttaaaacaaaatcataaagatt 330


Query: 742 taaaatcaattttaattactgggattgaaacacatgtttgtgttttacaatcaacattag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 taaaatcaattttaattactgggattgaaacacatgtttgtgttttacaatcaacattag 390


Query: 802 atttcttagagaatggatatgatgttcatattctctctgatgctgtttcttcaaataata 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atttcttagagaatggatatgatgttcatattctctctgatgctgtttcttcaaataata 450


Query: 862 ataatgatcgtttaattgcattagaaagaatgagacaattctggtgctttcattactact 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ataatgatcgtttaattgcattagaaagaatgagacaattctggtgctttcattactact 510


Query: 922 actgaaacaattacattccaattaactaaagatgcaaaacattaaaa 968
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actgaaacaattacattccaattaactaaagatgcaaaacattaaaa 557

Score = 178 bits (90), Expect(5) = 0.0
Identities = 99/102 (97%)
Strand = Plus / Plus


Query: 536 tcaatcaaaatatatgatgagagtatgtaatgaattaaaagtaccaattatatttacaga 595
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcaatcaaaatatatgataaaaatatgtaatgaattaaaagtaccaattatatttacaga 184


Query: 596 acaatatccaaaaggtttaggacatacagttgaagatttatt 637
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acaatatccaaaaggtttaggacatacagttgaagatttatt 226

Score = 119 bits (60), Expect(5) = 0.0
Identities = 66/68 (97%)
Strand = Plus / Plus


Query: 455 ccgaatacttcattattgtttatttgtgatattcaaagtaaatttgcaaatcatatattt 514
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 45 ccgaatacttcattattgtttatttgtgatattcaaagtaaatttgaaaatcacatattt 104


Query: 515 aaatttaa 522
||||||||
Sbjct: 105 aaatttaa 112

Score = 85.7 bits (43), Expect(5) = 0.0
Identities = 43/43 (100%)
Strand = Plus / Plus


Query: 411 tcgaccccgcgtccgcagaaatgaaatctgtaggaaatctttc 453
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tcgaccccgcgtccgcagaaatgaaatctgtaggaaatctttc 44

Score = 26.3 bits (13), Expect(5) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 965 aaaagttttaaaa 977
|||||||||||||
Sbjct: 555 aaaagttttaaaa 567

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,304,651,026
Number of extensions: 92054741
Number of successful extensions: 8150342
Number of sequences better than 10.0: 153
Length of query: 1107
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1083
Effective length of database: 99,340,224,878
Effective search space: 107585463542874
Effective search space used: 107585463542874
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U02029-1 (Contig-U02029-1Q) /CSM_Contig/Contig-U02029-1Q.Seq.d
(1107 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

T21813(T21813) hypothetical protein F35G2.2 - Caenorhabditis ele... 105 2e-25
(Q5PQ71) RecName: Full=Isochorismatase domain-containing protein... 106 8e-25
(Q6DF67) RecName: Full=Isochorismatase domain-containing protein... 106 8e-25
AY616198_1(AY616198|pid:none) Branchiostoma belcheri tsingtaunes... 107 2e-24
DQ886887_1(DQ886887|pid:none) Argas monolakensis mitochondrial a... 100 3e-22
(Q5RC03) RecName: Full=Isochorismatase domain-containing protein... 94 1e-21
(Q96AB3) RecName: Full=Isochorismatase domain-containing protein... 92 3e-21
(Q4R826) RecName: Full=Isochorismatase domain-containing protein... 94 5e-21
(Q54RF0) RecName: Full=Isochorismatase family protein 2A; 102 2e-20
BC158139_1(BC158139|pid:none) Mus musculus isochorismatase domai... 90 3e-20
AP009049_1370(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 101 4e-20
(Q08C33) RecName: Full=Isochorismatase domain-containing protein... 87 5e-20
(Q0IHU5) RecName: Full=Isochorismatase domain-containing protein... 88 4e-19
(Q5U3Z3) RecName: Full=Isochorismatase domain-containing protein... 87 4e-19
BT044688_1(BT044688|pid:none) Salmo salar clone ssal-rgf-002-315... 87 1e-18
BC049278_1(BC049278|pid:none) Mus musculus isochorismatase domai... 85 2e-18
CP000853_131(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 96 2e-18
(Q96CN7) RecName: Full=Isochorismatase domain-containing protein... 84 2e-18
BC148130_1(BC148130|pid:none) Bos taurus isochorismatase domain ... 84 2e-18
BC008367_1(BC008367|pid:none) Homo sapiens isochorismatase domai... 84 2e-18
(Q6I7R3) RecName: Full=Isochorismatase domain-containing protein... 85 3e-18
AK027122_1(AK027122|pid:none) Homo sapiens cDNA: FLJ23469 fis, c... 82 3e-18
FN357292_81(FN357292|pid:none) Schistosoma mansoni genome sequen... 95 4e-18
CP000108_167(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 89 6e-18
CP001099_505(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 94 7e-18
CP001575_150(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 84 3e-17
CP001108_474(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 92 4e-17
CP001097_447(CP001097|pid:none) Chlorobium limicola DSM 245, com... 88 5e-17
CP001101_503(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 91 6e-17
CP000713_2077(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 91 9e-17
AF151869_1(AF151869|pid:none) Homo sapiens CGI-111 protein mRNA,... 78 1e-16
BC094970_1(BC094970|pid:none) Danio rerio zgc:109735, mRNA (cDNA... 90 2e-16
CP000438_1125(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 89 3e-16
CP000744_1254(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 89 4e-16
A83164(A83164) hypothetical protein PA3846 [imported] - Pseudomo... 89 4e-16
AE006470_1655(AE006470|pid:none) Chlorobium tepidum TLS, complet... 86 2e-15
CP000096_1618(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 86 2e-15
AE017340_34(AE017340|pid:none) Idiomarina loihiensis L2TR, compl... 86 2e-15
CR628337_940(CR628337|pid:none) Legionella pneumophila str. Lens... 85 4e-15
CP001110_584(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 85 4e-15
CP000607_1427(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 85 4e-15
AK011674_1(AK011674|pid:none) Mus musculus 10 days embryo whole ... 85 5e-15
CP000860_395(CP000860|pid:none) Candidatus Desulforudis audaxvia... 84 7e-15
CP000448_1165(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 84 7e-15
AM270269_25(AM270269|pid:none) Aspergillus niger contig An12c013... 84 9e-15
CP000148_2533(CP000148|pid:none) Geobacter metallireducens GS-15... 82 3e-14
CP000230_2709(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 82 3e-14
AP008971_109(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 82 3e-14
CP001339_474(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 82 4e-14
CP000675_994(CP000675|pid:none) Legionella pneumophila str. Corb... 81 6e-14
CP000769_1076(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 81 6e-14
CP000304_2945(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 81 8e-14
AE017126_791(AE017126|pid:none) Prochlorococcus marinus subsp. m... 80 1e-13
BX548174_694(BX548174|pid:none) Prochlorococcus marinus MED4 com... 80 1e-13
CR954247_266(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 80 1e-13
CP000825_716(CP000825|pid:none) Prochlorococcus marinus str. MIT... 72 6e-13
CP000453_2399(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 78 6e-13
CP000095_681(CP000095|pid:none) Prochlorococcus marinus str. NAT... 77 1e-12
CP000930_1267(CP000930|pid:none) Heliobacterium modesticaldum Ic... 77 1e-12
CP000478_2844(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 76 2e-12
CP000487_1629(CP000487|pid:none) Campylobacter fetus subsp. fetu... 75 3e-12
CP000553_696(CP000553|pid:none) Prochlorococcus marinus str. NAT... 75 3e-12
CP000111_665(CP000111|pid:none) Prochlorococcus marinus str. MIT... 75 4e-12
AE014297_4942(AE014297|pid:none) Drosophila melanogaster chromos... 75 4e-12
CP001124_2775(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 75 5e-12
CP001131_1085(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 74 7e-12
AE014299_751(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 74 1e-11
CP001132_1755(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 73 2e-11
CR378677_183(CR378677|pid:none) Photobacterium profundum SS9 chr... 73 2e-11
CP001390_1701(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 72 3e-11
CP000469_3511(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 72 3e-11
CP000926_2095(CP000926|pid:none) Pseudomonas putida GB-1, comple... 71 6e-11
AE015451_3766(AE015451|pid:none) Pseudomonas putida KT2440 compl... 71 6e-11
CP000446_3347(CP000446|pid:none) Shewanella sp. MR-4, complete g... 71 8e-11
CP000712_1929(CP000712|pid:none) Pseudomonas putida F1, complete... 71 8e-11
CP000514_1164(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 70 1e-10
AP007255_1386(AP007255|pid:none) Magnetospirillum magneticum AMB... 70 1e-10
EF063592_32(EF063592|pid:none) Janthinobacterium lividum strain ... 70 1e-10
CP000931_886(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,... 70 1e-10
BX571661_190(BX571661|pid:none) Wolinella succinogenes, complete... 69 2e-10
CP000851_830(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 69 3e-10
BX548175_1029(BX548175|pid:none) Prochlorococcus marinus MIT9313... 69 4e-10
CP000698_905(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 68 5e-10
CP000655_370(CP000655|pid:none) Polynucleobacter necessarius sub... 68 7e-10
CP000113_2871(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 67 1e-09
AE016796_1327(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 67 1e-09
CP000878_745(CP000878|pid:none) Prochlorococcus marinus str. MIT... 66 2e-09
CP001280_1465(CP001280|pid:none) Methylocella silvestris BL2, co... 66 2e-09
BA000038_261(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 66 2e-09
CP000554_1335(CP000554|pid:none) Prochlorococcus marinus str. MI... 66 2e-09
CP000302_2836(CP000302|pid:none) Shewanella denitrificans OS217,... 65 4e-09
CP000507_645(CP000507|pid:none) Shewanella amazonensis SB2B, com... 65 6e-09
CP000975_1074(CP000975|pid:none) Methylacidiphilum infernorum V4... 64 7e-09
CP001196_2204(CP001196|pid:none) Oligotropha carboxidovorans OM5... 64 1e-08
CP000440_1881(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 64 1e-08
CP000606_844(CP000606|pid:none) Shewanella loihica PV-4, complet... 64 1e-08
CP000891_3811(CP000891|pid:none) Shewanella baltica OS195, compl... 63 2e-08
CP000817_3507(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 62 4e-08
AF083881_1(AF083881|pid:none) Leishmania tarentolae ribonuclease... 62 4e-08
CP000151_2013(CP000151|pid:none) Burkholderia sp. 383 chromosome... 62 5e-08
FM954973_31(FM954973|pid:none) Vibrio splendidus LGP32 chromosom... 60 1e-07
CP000155_3312(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 60 1e-07
CP000083_3302(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 60 1e-07
CP001252_3586(CP001252|pid:none) Shewanella baltica OS223, compl... 60 2e-07
CP000749_1594(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 60 2e-07
CP000821_930(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 59 3e-07
CP000961_970(CP000961|pid:none) Shewanella woodyi ATCC 51908, co... 59 4e-07
CP000544_2140(CP000544|pid:none) Halorhodospira halophila SL1, c... 58 5e-07
AB088224_11(AB088224|pid:none) Streptomyces rochei plasmid pSLA2... 58 5e-07
CP000613_1331(CP000613|pid:none) Rhodospirillum centenum SW, com... 58 5e-07
CT005247_33(CT005247|pid:none) Leishmania major strain Friedlin,... 58 5e-07
CP001025_1799(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 58 5e-07
CP001087_2910(CP001087|pid:none) Desulfobacterium autotrophicum ... 58 7e-07
AM746676_9240(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 57 9e-07
CP001322_2794(CP001322|pid:none) Desulfatibacillum alkenivorans ... 57 9e-07
BA000031_1987(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 57 9e-07
CP001013_2980(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 56 2e-06
AM502226_33(AM502226|pid:none) Leishmania infantum chromosome 8. 56 3e-06
CP001032_3077(CP001032|pid:none) Opitutus terrae PB90-1, complet... 56 3e-06
A95901(A95901) conserved hypothetical protein [imported] - Sinor... 54 8e-06
AJ749949_1091(AJ749949|pid:none) Francisella tularensis subsp. t... 54 8e-06
CP000915_984(CP000915|pid:none) Francisella tularensis subsp. me... 54 8e-06
CP000644_2351(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 51 6e-05
CP001392_1792(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 51 8e-05
CT005251_7(CT005251|pid:none) Leishmania major strain Friedlin, ... 51 8e-05
CP000529_1783(CP000529|pid:none) Polaromonas naphthalenivorans C... 51 8e-05
CR555306_3517(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 51 8e-05
CT005247_31(CT005247|pid:none) Leishmania major strain Friedlin,... 50 2e-04
CP000539_1935(CP000539|pid:none) Acidovorax sp. JS42, complete g... 50 2e-04
CP000738_2958(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 49 2e-04
CP000316_2596(CP000316|pid:none) Polaromonas sp. JS666, complete... 48 7e-04
CP000542_262(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 45 0.005
AL954747_2306(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 45 0.005
CP000852_1000(CP000852|pid:none) Caldivirga maquilingensis IC-16... 45 0.006
CP001124_517(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 45 0.006
AX970484_1(AX970484|pid:none) Sequence 1287 from Patent EP1104808. 44 0.008
CP000227_17(CP000227|pid:none) Bacillus cereus Q1, complete geno... 44 0.010
CP001177_16(CP001177|pid:none) Bacillus cereus AH187, complete g... 44 0.010
CP000489_1617(CP000489|pid:none) Paracoccus denitrificans PD1222... 44 0.013
CP001017_132(CP001017|pid:none) Beijerinckia indica subsp. indic... 44 0.013
CP001016_2892(CP001016|pid:none) Beijerinckia indica subsp. indi... 44 0.013
AM295250_1482(AM295250|pid:none) Staphylococcus carnosus subsp. ... 43 0.017
AP006878_1651(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 43 0.017
CP001398_1136(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 43 0.023
CP001034_1801(CP001034|pid:none) Natranaerobius thermophilus JW/... 43 0.023
AM746676_8360(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 43 0.023
CP001186_16(CP001186|pid:none) Bacillus cereus G9842, complete g... 43 0.023
CP000753_3788(CP000753|pid:none) Shewanella baltica OS185, compl... 43 0.023
CP000680_3543(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 43 0.023
BX640425_311(BX640425|pid:none) Bordetella parapertussis strain ... 42 0.030
CP000462_2612(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 42 0.030
AE017194_17(AE017194|pid:none) Bacillus cereus ATCC 10987, compl... 42 0.030
CP001176_16(CP001176|pid:none) Bacillus cereus B4264, complete g... 42 0.030
CP001001_1726(CP001001|pid:none) Methylobacterium radiotolerans ... 42 0.039
FM204883_434(FM204883|pid:none) Streptococcus equi subsp. equi 4... 42 0.039
AJ248286_37(AJ248286|pid:none) Pyrococcus abyssi complete genome... 42 0.039
CP001129_375(CP001129|pid:none) Streptococcus equi subsp. zooepi... 42 0.039
AE016879_15(AE016879|pid:none) Bacillus anthracis str. Ames, com... 42 0.050
AE017355_16(AE017355|pid:none) Bacillus thuringiensis serovar ko... 42 0.050
AM260479_1662(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 42 0.050
CP000908_61(CP000908|pid:none) Methylobacterium extorquens PA1, ... 42 0.050
CP000759_1229(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 42 0.050
CT573326_765(CT573326|pid:none) Pseudomonas entomophila str. L48... 41 0.066
CU651637_798(CU651637|pid:none) Escherichia coli LF82 chromosome... 41 0.066
CP000884_2879(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 41 0.066
AE005674_856(AE005674|pid:none) Shigella flexneri 2a str. 301, c... 41 0.066
AE009439_504(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 41 0.066
CP000563_480(CP000563|pid:none) Shewanella baltica OS155, comple... 41 0.066
CP000036_910(CP000036|pid:none) Shigella boydii Sb227, complete ... 41 0.066
CP001252_3716(CP001252|pid:none) Shewanella baltica OS223, compl... 41 0.066
CP000822_2118(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 41 0.066
AP009240_955(AP009240|pid:none) Escherichia coli SE11 DNA, compl... 41 0.066
CU928158_986(CU928158|pid:none) Escherichia fergusonii ATCC 3546... 41 0.066
AM910990_203(AM910990|pid:none) Plasmodium knowlesi strain H chr... 39 0.080
CP000744_4134(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 41 0.086
CP001196_3431(CP001196|pid:none) Oligotropha carboxidovorans OM5... 41 0.086
BA000012_5385(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 40 0.11
AM746676_2213(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.11
CP000903_16(CP000903|pid:none) Bacillus weihenstephanensis KBAB4... 40 0.11
CP000408_340(CP000408|pid:none) Streptococcus suis 98HAH33, comp... 40 0.11
AE007870_799(AE007870|pid:none) Agrobacterium tumefaciens str. C... 40 0.11
CU633749_671(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 40 0.15
AE007317_1437(AE007317|pid:none) Streptococcus pneumoniae R6, co... 40 0.15
(P21367) RecName: Full=Uncharacterized protein ycaC; &AP009048_... 40 0.15
AX972024_1(AX972024|pid:none) Sequence 2827 from Patent EP1104808. 40 0.15
CP000302_3721(CP000302|pid:none) Shewanella denitrificans OS217,... 40 0.15
AE007872_279(AE007872|pid:none) Agrobacterium tumefaciens str. C... 40 0.19
CU633750_1580(CU633750|pid:none) Cupriavidus taiwanensis str. LM... 40 0.19
AE008922_2138(AE008922|pid:none) Xanthomonas campestris pv. camp... 40 0.19
CP000505_105(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 40 0.19
CP001349_2704(CP001349|pid:none) Methylobacterium nodulans ORS 2... 40 0.19
CP000033_1337(CP000033|pid:none) Lactobacillus acidophilus NCFM,... 40 0.19
CP000521_2838(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 40 0.19
CP000103_900(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 40 0.19
AC3194(AC3194) hydrolase [imported] - Agrobacterium tumefaciens ... 40 0.19
CP000387_540(CP000387|pid:none) Streptococcus sanguinis SK36, co... 40 0.19
AM406671_729(AM406671|pid:none) Lactococcus lactis subsp. cremor... 39 0.25
CP000001_16(CP000001|pid:none) Bacillus cereus E33L, complete ge... 39 0.25
AE006469_1109(AE006469|pid:none) Sinorhizobium meliloti 1021 pla... 39 0.25
AE004091_1204(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 39 0.25
CP001022_2773(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 39 0.33
AM902716_6(AM902716|pid:none) Bordetella petrii strain DSM 12804... 39 0.33
AL766852_161(AL766852|pid:none) Streptococcus agalactiae NEM316 ... 39 0.33
AE016879_3031(AE016879|pid:none) Bacillus anthracis str. Ames, c... 39 0.33
CP000233_1491(CP000233|pid:none) Lactobacillus salivarius UCC118... 39 0.33
CP000926_5268(CP000926|pid:none) Pseudomonas putida GB-1, comple... 39 0.33
CP001581_732(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 39 0.33
AE005174_1084(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 39 0.43
CP000725_426(CP000725|pid:none) Streptococcus gordonii str. Chal... 39 0.43
CP000117_5004(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 39 0.43
CP000943_2276(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 39 0.43
AM946015_1489(AM946015|pid:none) Streptococcus uberis 0140J comp... 39 0.43
AM260480_1896(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 39 0.43
CP000560_1938(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 38 0.56
AE015451_5186(AE015451|pid:none) Pseudomonas putida KT2440 compl... 38 0.56
CP000774_2369(CP000774|pid:none) Parvibaculum lavamentivorans DS... 38 0.56
CP000959_1016(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ... 38 0.56
CP000251_1027(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 38 0.56
AP008937_1390(AP008937|pid:none) Lactobacillus fermentum IFO 395... 38 0.56
AP009384_2286(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 38 0.73
AE016877_3075(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 38 0.73
CP000560_18(CP000560|pid:none) Bacillus amyloliquefaciens FZB42,... 38 0.73
AP009484_1655(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 38 0.73
CP000555_766(CP000555|pid:none) Methylibium petroleiphilum PM1, ... 38 0.73
BA000040_6959(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 38 0.73
CP000517_741(CP000517|pid:none) Lactobacillus helveticus DPC 457... 38 0.73
CP000712_1831(CP000712|pid:none) Pseudomonas putida F1, complete... 38 0.73
CU234118_4850(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 38 0.73
CP001349_3019(CP001349|pid:none) Methylobacterium nodulans ORS 2... 38 0.73
CP001029_1301(CP001029|pid:none) Methylobacterium populi BJ001, ... 38 0.73
CP000494_5250(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 37 0.95
CP001029_4281(CP001029|pid:none) Methylobacterium populi BJ001, ... 37 0.95
CP000728_1117(CP000728|pid:none) Clostridium botulinum F str. La... 37 0.95
BA000040_2273(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 37 0.95
CP000739_394(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 37 0.95
CP000472_3177(CP000472|pid:none) Shewanella piezotolerans WP3, c... 37 0.95
CP000485_2785(CP000485|pid:none) Bacillus thuringiensis str. Al ... 37 0.95
CP000416_230(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 37 0.95
CP000728_673(CP000728|pid:none) Clostridium botulinum F str. Lan... 37 1.2
AF484556_29(AF484556|pid:none) Streptomyces atroolivaceus leinam... 37 1.2
A70227(A70227) pyrazinamidase/nicotinamidase (pncA) homolog - Ly... 37 1.2
AL935259_180(AL935259|pid:none) Lactobacillus plantarum strain W... 37 1.2
AE017282_2618(AE017282|pid:none) Methylococcus capsulatus str. B... 37 1.2
CP000962_1187(CP000962|pid:none) Clostridium botulinum A3 str. L... 37 1.2
CP001635_1901(CP001635|pid:none) Variovorax paradoxus S110 chrom... 37 1.2
BX572599_237(BX572599|pid:none) Rhodopseudomonas palustris CGA00... 37 1.2
CP000908_991(CP000908|pid:none) Methylobacterium extorquens PA1,... 37 1.2
CP000024_1545(CP000024|pid:none) Streptococcus thermophilus CNRZ... 37 1.6
CP001083_696(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 37 1.6
AM236080_309(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 37 1.6
T44772(T44772) hypothetical protein [imported] - Bacillus subtil... 37 1.6
CP000949_218(CP000949|pid:none) Pseudomonas putida W619, complet... 37 1.6
CP000137_112(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4... 37 1.6
CP000634_539(CP000634|pid:none) Agrobacterium vitis S4 chromosom... 37 1.6
CP000091_1209(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 37 1.6
(O07081) RecName: Full=Uncharacterized isochorismatase family pr... 37 1.6
CP000939_698(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 37 1.6
CP001176_2816(CP001176|pid:none) Bacillus cereus B4264, complete... 37 1.6
AL646053_662(AL646053|pid:none) Ralstonia solanacearum GMI1000 m... 37 1.6
CP001172_1996(CP001172|pid:none) Acinetobacter baumannii AB307-0... 36 2.1
CP000863_1489(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 36 2.1
CP000023_1507(CP000023|pid:none) Streptococcus thermophilus LMG ... 36 2.1
CP000781_1267(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 36 2.1
CP000125_1263(CP000125|pid:none) Burkholderia pseudomallei 1710b... 36 2.1
AP009324_2630(AP009324|pid:none) Staphylococcus aureus subsp. au... 36 2.1
CP001615_2048(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 36 2.1
BX571966_2194(BX571966|pid:none) Burkholderia pseudomallei strai... 36 2.1
CP000682_430(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 33 2.4
CP000239_1821(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 36 2.8
AM747721_1159(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 36 2.8
AP009384_209(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 36 2.8
AE006469_1003(AE006469|pid:none) Sinorhizobium meliloti 1021 pla... 36 2.8
CP000453_2342(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 36 2.8
CP001014_1679(CP001014|pid:none) Thermoproteus neutrophilus V24S... 36 2.8
CP000384_2750(CP000384|pid:none) Mycobacterium sp. MCS, complete... 36 2.8
CP000103_2126(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 36 2.8
CP000379_1319(CP000379|pid:none) Burkholderia cenocepacia AU 105... 36 2.8
AE007286_6(AE007286|pid:none) Sinorhizobium meliloti 1021 plasmi... 36 2.8
CP000521_1570(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 36 2.8
AM920437_2429(AM920437|pid:none) Penicillium chrysogenum Wiscons... 35 3.6
CP000724_4411(CP000724|pid:none) Alkaliphilus metalliredigens QY... 35 3.6
CP000113_2173(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 35 3.6
CP001338_1124(CP001338|pid:none) Candidatus Methanosphaerula pal... 35 3.6
AE008384_2643(AE008384|pid:none) Methanosarcina mazei strain Goe... 35 3.6
CP000352_1913(CP000352|pid:none) Ralstonia metallidurans CH34, c... 35 3.6
AM412317_693(AM412317|pid:none) Clostridium botulinum A str. ATC... 35 3.6
CP000228_78(CP000228|pid:none) Bacillus cereus Q1 plasmid pBc239... 35 3.6
CP000085_2215(CP000085|pid:none) Burkholderia thailandensis E264... 35 3.6
CP000504_407(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 35 3.6
(O60028) RecName: Full=Cysteine desulfurase, mitochondrial; ... 35 3.6
CP000412_246(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 35 4.7
AM746676_3715(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 4.7
CP000250_187(CP000250|pid:none) Rhodopseudomonas palustris HaA2,... 35 4.7
CP000435_1051(CP000435|pid:none) Synechococcus sp. CC9311, compl... 35 4.7
CP000428_35(CP000428|pid:none) Lactococcus lactis subsp. cremori... 35 4.7
CP000716_29(CP000716|pid:none) Thermosipho melanesiensis BI429, ... 35 4.7
AM743169_2574(AM743169|pid:none) Stenotrophomonas maltophilia K2... 35 4.7
CP000629_203(CP000629|pid:none) Agrobacterium radiobacter K84 ch... 35 4.7
CP000560_2728(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 35 4.7
AY743297_1(AY743297|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
AM408590_2066(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 35 6.2
CP001635_273(CP001635|pid:none) Variovorax paradoxus S110 chromo... 35 6.2
CP000829_1303(CP000829|pid:none) Streptococcus pyogenes NZ131, c... 35 6.2
AE000516_2162(AE000516|pid:none) Mycobacterium tuberculosis CDC1... 35 6.2
AY743289_1(AY743289|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
AY743303_1(AY743303|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
AM260480_1392(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 35 6.2
AL939132_184(AL939132|pid:none) Streptomyces coelicolor A3(2) co... 35 6.2
AY743296_1(AY743296|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
AM910995_417(AM910995|pid:none) Plasmodium knowlesi strain H chr... 35 6.2
AE004092_1367(AE004092|pid:none) Streptococcus pyogenes M1 GAS, ... 35 6.2
FJ151195_1(FJ151195|pid:none) Mycobacterium tuberculosis strain ... 35 6.2
AE014074_1543(AE014074|pid:none) Streptococcus pyogenes MGAS315,... 35 6.2
CU459141_1646(CU459141|pid:none) Acinetobacter baumannii str. AY... 35 6.2
AY743318_1(AY743318|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
FJ151178_1(FJ151178|pid:none) Mycobacterium tuberculosis strain ... 35 6.2
FJ151192_1(FJ151192|pid:none) Mycobacterium tuberculosis strain ... 35 6.2
AY743313_1(AY743313|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
CP000056_1495(CP000056|pid:none) Streptococcus pyogenes MGAS6180... 35 6.2
AY743300_1(AY743300|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
CP000003_1504(CP000003|pid:none) Streptococcus pyogenes MGAS1039... 35 6.2
AY743301_1(AY743301|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
AY966973_1(AY966973|pid:none) Synthetic construct isolate FTT108... 35 6.2
AY743291_1(AY743291|pid:none) Mycobacterium tuberculosis isolate... 35 6.2
CP000608_1129(CP000608|pid:none) Francisella tularensis subsp. t... 35 6.2
AJ749949_1089(AJ749949|pid:none) Francisella tularensis subsp. t... 35 6.2
CP000252_2756(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 34 8.1
CP000968_805(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 34 8.1
FM211055_16(FM211055|pid:none) Photorhabdus asymbiotica subsp. a... 34 8.1
CP001636_163(CP001636|pid:none) Variovorax paradoxus S110 chromo... 34 8.1
AE014075_4671(AE014075|pid:none) Escherichia coli CFT073, comple... 34 8.1
FM180568_4143(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 34 8.1
AY743304_1(AY743304|pid:none) Mycobacterium tuberculosis isolate... 34 8.1
AY743316_1(AY743316|pid:none) Mycobacterium tuberculosis isolate... 34 8.1
AF195615_6(AF195615|pid:none) Pseudomonas chlororaphis autoinduc... 34 8.1
CP000247_4000(CP000247|pid:none) Escherichia coli 536, complete ... 34 8.1
AM180088_1291(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 34 8.1
CP000001_2648(CP000001|pid:none) Bacillus cereus E33L, complete ... 34 8.1
CP000076_2431(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 34 8.1

>T21813(T21813) hypothetical protein F35G2.2 - Caenorhabditis
elegans &Z69637_3(Z69637|pid:none)
Length = 199

Score = 105 bits (262), Expect(2) = 2e-25
Identities = 55/124 (44%), Positives = 80/124 (64%)
Frame = +3

Query: 528 VVNQSKYMMRVCNELKVPIIFTEQYPKGLGHTVEDLLKERNENNQTKIFEKTLYSMCTNE 707
++ S+ ++ L +P I TEQYPKGLGHTV L + EN T IF+KT +SMC
Sbjct: 36 IITTSRRLIDAARILSIPTIVTEQYPKGLGHTVPTLKEGLAEN--TPIFDKTKFSMCIPP 93

Query: 708 VLNHLKQNHKDLKSILITGIETHVCVLQSTLDFLENGYDVHILSDAVSSNNNNDRLIALE 887
+ LK+ ++++++ GIE HVCVLQ+T D LE G +VH++ DAVSS ++ DR A +
Sbjct: 94 TEDTLKK----VQNVILVGIEAHVCVLQTTYDLLERGLNVHVVVDAVSSRSHTDRHFAFK 149

Query: 888 RMRQ 899
+M Q
Sbjct: 150 QMEQ 153

Score = 34.7 bits (78), Expect(2) = 2e-25
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2

Query: 425 AEMKSVGNLSPNTSLLFICDIQSKFANHIFKF 520
A K + ++P S LF+CD+Q KFA++I F
Sbjct: 2 AARKLIARINPTNSALFVCDLQEKFASNIKYF 33

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,354,499,951
Number of extensions: 22654044
Number of successful extensions: 66093
Number of sequences better than 10.0: 339
Number of HSP's gapped: 65895
Number of HSP's successfully gapped: 367
Length of query: 369
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 239
Effective length of database: 630,428,194
Effective search space: 150672338366
Effective search space used: 150672338366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.66 gvh: 0.46 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
44.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for Contig-U02029-1 is nuc

VS (DIR, S) 7
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1