Contig-U02024-1
Contig ID Contig-U02024-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02024-1 (Contig-U02024-1Q) /CSM_Contig/Contig-U02024-1Q.Seq.d
CGGCACCGAATGTTATAAATATTATTTATACATATATTATCAATTTATAA
TTTTTCAAAATTTTTTTTTTTTTTTTTTAATTTTTTATATTATTTTTTTT
TTCTCTTTATAATAAAATTTTTTTATAAAAAAAACAATTAAAAAAAAAAA
AAAAAAAAATAAAATAACATAAAAACGCAATAATAATAAATAAATAATAA
ATAAATAATAGATACATACATTTATATTTATAA----------GGAGCAG
CATCAGCATCACAACAAAATAATCCTACTTCATTATTTGAAATTACAGAT
TTAAGTTTAAAGAATGATATTATAGAGGGTTTACAAGAACAACCTCAAGA
TTCAGATCTATTGGCACAATATGGTGTATTATTGTCAATGGAGGGTAAAA
ATAAAGAAGCAGAAGAATCATTAAGGAAAGCTGTAGAGGTTGATACTGAT
AACTCTAGAGCTTGGCAAGCATATGGTGAATTTTTAGAAAGAACAAATAA
TCCAAAGAAAGCAAAAGAAGTTTATGGTGAAGCTTATAAACATGCTGCTC
CAAAGATTGCATTAGACGAAGATGATAGTAGTTTATTATTAAGTTATGCA
ATTTTCATTCAAAAATCAGGAGAAATAGATAAAGCAGAGAAATTATATAA
AAGAATTGTTACTAGTGGTGCTCGTAGTTCAGAGTCATTAGGTCGTTATG
GTTTATTCTTATTGGAGGTTAAAAAAGATGTTGAAAAGGGTGGCATTTAC
TTAAAAGATGCAGCAGATATTGACCCACCATCACCTGAATGGTGTACAAG
ATATTCAAATTATCTTAAAACTTATAAAAAAGATGAATTTGAAGCAACAA
AATATCAAAAGAGAGTTAGTTTATATGTAAATTAATATTAAAAAAAAAAA
AAAAAAAAAAAAAAAAATTTAAAAAGATTTTTAAATATCATATCATATAT
AGTAGTAATTTCAATAAAAATACAAAATAAAAAAAAAATGATTAATGATA
ATATATCAATATAATCATATATCAATGTAAAAATA

Gap gap included
Contig length 1025
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2810374
End point 2809347
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U02024
List of clone(s)

est1=SSM874F,1,234
est2=SSI718Z,235,881
est3=SSE324Z,488,1027
est4=SSM874Z,599,941
Translated Amino Acid sequence
rhrml*ilfihilsiynfskffffffnflyyffflfiikffykknn*kkkkkk*nniktq
***innk*IIDTYIYIY---

---GAASASQQNNPTSLFEITDLSLKNDIIEGLQEQPQDSDLLAQYGVLLSMEGKNKEAE
ESLRKAVEVDTDNSRAWQAYGEFLERTNNPKKAKEVYGEAYKHAAPKIALDEDDSSLLLS
YAIFIQKSGEIDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADID
PPSPEWCTRYSNYLKTYKKDEFEATKYQKRVSLYVN*y*kkkkkkkknlkrflniisyiv
visikiqnkkkmindnisi*syinvki


Translated Amino Acid sequence (All Frames)
Frame A:
rhrml*ilfihilsiynfskffffffnflyyffflfiikffykknn*kkkkkk*nniktq
***innk*IIDTYIYIY---

---GAASASQQNNPTSLFEITDLSLKNDIIEGLQEQPQDSDLLAQYGVLLSMEGKNKEAE
ESLRKAVEVDTDNSRAWQAYGEFLERTNNPKKAKEVYGEAYKHAAPKIALDEDDSSLLLS
YAIFIQKSGEIDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADID
PPSPEWCTRYSNYLKTYKKDEFEATKYQKRVSLYVN*y*kkkkkkkknlkrflniisyiv
visikiqnkkkmindnisi*syinvki

Frame B:
gtecykyylyiyyqfiifqnffffflifyiifffsl**nffikktikkkkkknkit*krn
nnk*iink**ihtfifi---

---eqhqhhnkiillhylklqi*v*rmil*rvyknnlkiqiywhnmvyycqwrvkikkqk
nh*gkl*rlilitlelgkhmvnf*keqiiqrkqkkfmvklinmllqrlh*tkmivvyy*v
mqfsfknqek*ikqrnyikelllvvlvvqsh*vvmvysywrlkkmlkrvaft*kmqqilt
hhhlngvqdiqiilklikkmnlkqqnikrelvym*inikkkkkkkkki*kdf*isyhi**
*fq*kykikkk*lmiiyqynhism*k

Frame C:
apnviniiytyiinl*ffkifffff*ffilfffslynkifl*kkqlkkkkkkik*hknai
iink**innryihlyl*---

---ssisittk*syfii*nyrfkfke*yyrgftrttsrfrsigtiwciivngg*k*rsrr
iikescrg*y**l*slasiw*ifrknk*skeskrslw*sl*tccskdcirrr***fiikl
cnfhskirrnr*sreii*kncy*wcs*frvirslwfiligg*krc*kgwhllkrcsry*p
tit*mvykifkls*nl*kr*i*snkiskes*ficklilkkkkkkkkkfkkifkyhiiyss
nfnkntk*kknd***yiniiiyqckn

own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02024-1 (Contig-U02024-1Q)
/CSM_Contig/Contig-U02024-1Q.Seq.d
(1035 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02024-1 (Contig-U02024-1Q) /CSM_Contig/Conti... 1287 0.0
Contig-U06303-1 (Contig-U06303-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti... 36 0.073
Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Conti... 36 0.073
Contig-U01014-1 (Contig-U01014-1Q) /CSM_Contig/Conti... 36 0.073
Contig-U14716-1 (Contig-U14716-1Q) /CSM_Contig/Conti... 34 0.29
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti... 34 0.29
Contig-U13967-1 (Contig-U13967-1Q) /CSM_Contig/Conti... 34 0.29
Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti... 34 0.29
Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Conti... 34 0.29

>Contig-U02024-1 (Contig-U02024-1Q) /CSM_Contig/Contig-U02024-1Q.Seq.d
Length = 1035

Score = 1287 bits (649), Expect = 0.0
Identities = 679/679 (100%)
Strand = Plus / Plus


Query: 211 gatacatacatttatatttataannnnnnnnnnggagcagcatcagcatcacaacaaaat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gatacatacatttatatttataannnnnnnnnnggagcagcatcagcatcacaacaaaat 270


Query: 271 aatcctacttcattatttgaaattacagatttaagtttaaagaatgatattatagagggt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatcctacttcattatttgaaattacagatttaagtttaaagaatgatattatagagggt 330


Query: 331 ttacaagaacaacctcaagattcagatctattggcacaatatggtgtattattgtcaatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttacaagaacaacctcaagattcagatctattggcacaatatggtgtattattgtcaatg 390


Query: 391 gagggtaaaaataaagaagcagaagaatcattaaggaaagctgtagaggttgatactgat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gagggtaaaaataaagaagcagaagaatcattaaggaaagctgtagaggttgatactgat 450


Query: 451 aactctagagcttggcaagcatatggtgaatttttagaaagaacaaataatccaaagaaa 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aactctagagcttggcaagcatatggtgaatttttagaaagaacaaataatccaaagaaa 510


Query: 511 gcaaaagaagtttatggtgaagcttataaacatgctgctccaaagattgcattagacgaa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gcaaaagaagtttatggtgaagcttataaacatgctgctccaaagattgcattagacgaa 570


Query: 571 gatgatagtagtttattattaagttatgcaattttcattcaaaaatcaggagaaatagat 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gatgatagtagtttattattaagttatgcaattttcattcaaaaatcaggagaaatagat 630


Query: 631 aaagcagagaaattatataaaagaattgttactagtggtgctcgtagttcagagtcatta 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaagcagagaaattatataaaagaattgttactagtggtgctcgtagttcagagtcatta 690


Query: 691 ggtcgttatggtttattcttattggaggttaaaaaagatgttgaaaagggtggcatttac 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggtcgttatggtttattcttattggaggttaaaaaagatgttgaaaagggtggcatttac 750


Query: 751 ttaaaagatgcagcagatattgacccaccatcacctgaatggtgtacaagatattcaaat 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttaaaagatgcagcagatattgacccaccatcacctgaatggtgtacaagatattcaaat 810


Query: 811 tatcttaaaacttataaaaaagatgaatttgaagcaacaaaatatcaaaagagagttagt 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tatcttaaaacttataaaaaagatgaatttgaagcaacaaaatatcaaaagagagttagt 870


Query: 871 ttatatgtaaattaatatt 889
|||||||||||||||||||
Sbjct: 871 ttatatgtaaattaatatt 889


Score = 119 bits (60), Expect = 6e-27
Identities = 60/60 (100%)
Strand = Plus / Plus


Query: 1 cggcaccgaatgttataaatattatttatacatatattatcaatttataatttttcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggcaccgaatgttataaatattatttatacatatattatcaatttataatttttcaaaa 60


Score = 95.6 bits (48), Expect = 9e-20
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 918 tttaaaaagatttttaaatatcatatcatatatagtagtaatttcaat 965
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tttaaaaagatttttaaatatcatatcatatatagtagtaatttcaat 965


Score = 93.7 bits (47), Expect = 4e-19
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 989 tgattaatgataatatatcaatataatcatatatcaatgtaaaaata 1035
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tgattaatgataatatatcaatataatcatatatcaatgtaaaaata 1035


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 103 ctctttataataaaatttttttat 126
||||||||||||||||||||||||
Sbjct: 103 ctctttataataaaatttttttat 126


>Contig-U06303-1 (Contig-U06303-1Q) /CSM_Contig/Contig-U06303-1Q.Seq.d
Length = 197

Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 871 ttatatgtaaattaatatt 889
|||||||||||||||||||
Sbjct: 177 ttatatgtaaattaatatt 195


>Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Contig-U11196-1Q.Seq.d
Length = 2477

Score = 36.2 bits (18), Expect = 0.073
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 719 ttaaaaaagatgttgaaa 736
||||||||||||||||||
Sbjct: 1552 ttaaaaaagatgttgaaa 1569


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,606
Number of Sequences: 6905
Number of extensions: 16606
Number of successful extensions: 1876
Number of sequences better than 10.0: 211
length of query: 1035
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1019
effective length of database: 5,564,391
effective search space: 5670114429
effective search space used: 5670114429
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.13
Homology vs DNA
Query= Contig-U02024-1 (Contig-U02024-1Q) /CSM_Contig/Contig-U02024-1Q.Seq.d
(1035 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C90555) Dictyostelium discoideum slug cDNA, clone SSI718. 1277 0.0 1
(AU037811) Dictyostelium discoideum slug cDNA, clone SSE324. 771 0.0 2
(C93249) Dictyostelium discoideum slug cDNA, clone SSM874. 472 e-128 1
(AU075072) Dictyostelium discoideum slug cDNA, clone SSM874. 119 6e-29 2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 42 7e-04 12
(CR848025) Zebrafish DNA sequence from clone DKEY-202L22. 58 7e-04 1
(AL748258) Danio rerio genomic clone DKEY-7K16, genomic surv... 58 7e-04 1
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 52 0.004 9
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 0.024 13
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 0.026 17
(CU656025) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.044 1
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 38 0.088 11
(AE001378) Plasmodium falciparum 3D7 chromosome 2 section 15... 34 0.11 5
(AY229987) Cryptophlebia leucotreta granulovirus isolate CV3... 46 0.12 4
(AB125360) Zostera asiatica chloroplast gene for maturase, c... 44 0.13 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 0.13 11
(AB331296) Brasenia schreberi chloroplast rpl2, trnH, psbA g... 50 0.17 1
(AC142594) Macaca mulatta clone CH250-272A22, WORKING DRAFT ... 50 0.17 1
(CL557118) OB__Ba0009I14.f OB__Ba Oryza brachyantha genomic ... 50 0.17 1
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 30 0.29 13
(AC026654) Homo sapiens chromosome 1 clone RP11-240M13, WORK... 40 0.33 5
(AL137072) Human DNA sequence from clone RP11-29B11 on chrom... 40 0.36 4
(AC096149) Rattus norvegicus clone CH230-10H16, *** SEQUENCI... 36 0.37 2
(AC117019) Rattus norvegicus clone CH230-14E5, WORKING DRAFT... 36 0.37 2
(AC135810) Rattus norvegicus clone CH230-168P6, WORKING DRAF... 36 0.38 2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.38 10
(AL035476) Plasmodium falciparum MAL4P3. 34 0.49 14
(BH300392) CH230-84M14.TV CHORI-230 Segment 1 Rattus norvegi... 36 0.49 2
(AL355853) Human DNA sequence from clone RP11-36B21 on chrom... 38 0.55 6
(CU467867) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 0.59 5
(CZ541877) SRAA-aad40g12.g1 Strongyloides ratti whole genome... 44 0.64 2
(CZ542055) SRAA-aad41g12.g1 Strongyloides ratti whole genome... 44 0.65 2
(AC166982) Mus musculus chromosome 18, clone RP24-377P23, co... 48 0.68 1
(AC121524) Mus musculus chromosome 18, clone RP24-342F19, co... 48 0.68 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.68 1
(AL732332) Oryza sativa genomic DNA, chromosome 4, BAC clone... 48 0.68 1
(AL731607) Oryza sativa genomic DNA, chromosome 4, BAC clone... 48 0.68 1
(AL606454) Oryza sativa genomic DNA, chromosome 4, BAC clone... 48 0.68 1
(AL442112) Oryza sativa genomic DNA, chromosome 4, BAC clone... 48 0.68 1
(AL844509) Plasmodium falciparum chromosome 13. 48 0.68 1
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 48 0.68 1
(AC213874) Zea mays chromosome 3 clone ZMMBBb-330L20; ZMMBBb... 48 0.68 1
(CC280273) CH261-24J8_RM1.1 CH261 Gallus gallus genomic clon... 48 0.68 1
(AY689436) Deerpox virus W-848-83, complete genome. 36 0.68 9
(AC010218) Homo sapiens chromosome 5 clone CTC-214C18, compl... 44 0.76 3
(AJ006966) Plasmodium falciparum genes encoding gamma-glutam... 32 0.99 5
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 34 1.00 19
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 34 1.1 10
(AM424601) Vitis vinifera contig VV78X237783.6, whole genome... 36 1.1 4
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 32 1.2 10
(AC110219) Mus musculus chromosome 1, clone RP24-541P18, com... 38 1.4 5
(AC206545) Pongo abelii BAC clone CH276-487H8 from chromosom... 36 1.4 2
(CU442708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.4 2
(AC010176) Homo sapiens 12 BAC RP11-711K1 (Roswell Park Canc... 36 1.4 2
(AC090605) Homo sapiens chromosome 15, clone RP11-261P5, com... 32 1.4 2
(AC026074) Homo sapiens chromosome 15 clone RP11-261P5, WORK... 32 1.4 2
(BX927256) Zebrafish DNA sequence from clone CH211-272F14 in... 36 1.4 2
(CR391966) Zebrafish DNA sequence from clone CH211-269M15 in... 36 1.4 2
(BB981529) Plasmodium berghei str. ANKA cDNA clone: OK011805... 44 1.5 2
(Z46727) S.cerevisiae chromosome IV cosmid 9395. 44 1.6 2
(AB125359) Zostera caespitosa chloroplast gene for maturase,... 44 1.7 2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 38 1.7 21
(EW760837) sb_009_12D06_m13reverselong Onychiurus arcticus d... 42 1.7 2
(AB125357) Zostera marina chloroplast gene for maturase, com... 44 1.8 2
(AB125356) Zostera marina chloroplast gene for maturase, com... 44 1.8 2
(AB125354) Zostera marina chloroplast gene for maturase, com... 44 1.8 2
(AB125355) Zostera marina chloroplast gene for maturase, com... 44 1.8 2
(AB125358) Zostera caulescens chloroplast gene for maturase,... 44 1.8 2
(AL590964) Human DNA sequence from clone RP11-505O14 on chro... 42 1.8 6
(DC226095) Plasmodium berghei strain ANKA cDNA clone:SG00473... 44 1.8 2
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 40 1.8 9
(AL844507) Plasmodium falciparum chromosome 8. 32 1.9 13
(AL590484) Human DNA sequence from clone RP11-76E18 on chrom... 34 1.9 5
(BV434903) S237P6354FC9.T0 PortugueseWaterDog Canis familiar... 40 1.9 2
(BF298679) 019PbH12 Pb cDNA #20, Charles Yowell and Jane Car... 44 1.9 2
(BF294922) 010PbC09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 44 2.0 2
(BM165002) EST567525 PyBS Plasmodium yoelii yoelii cDNA clon... 44 2.0 2
(BB981348) Plasmodium berghei str. ANKA cDNA clone: OK011608... 44 2.0 2
(BH435571) BOGVN96TF BOGV Brassica oleracea genomic clone BO... 44 2.0 2
(DC219743) Plasmodium berghei strain ANKA cDNA clone:MZ00153... 44 2.1 2
(BM160163) EST562686 PyBS Plasmodium yoelii yoelii cDNA clon... 44 2.1 2
(AM630018) Entamoeba dispar GSS, clone dispar49g03.p1k. 38 2.2 2
(AY689437) Deerpox virus W-1170-84, complete genome. 36 2.2 8
(ED570160) SBA036_F01.r Sugar beet BAC library USH20 (Code S... 44 2.3 2
(AC153714) Bos taurus clone CH240-22J10, WORKING DRAFT SEQUE... 38 2.3 6
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 34 2.3 9
(AM459903) Vitis vinifera contig VV78X116949.6, whole genome... 36 2.3 4
(AM637824) Entamoeba dispar GSS, clone dispar48b12.p1k. 38 2.3 2
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 34 2.5 11
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 32 2.6 10
(EI784758) CHORI518008J18TR BAC library from the breast cell... 38 2.7 3
(CT955961) Mouse DNA sequence from clone RP24-87E7 on chromo... 46 2.7 1
(AC109503) Mus musculus chromosome 12, clone RP23-427N7, com... 46 2.7 1
(AC183686) Pan troglodytes BAC clone CH251-209O13 from chrom... 46 2.7 1
(AC174355) Medicago truncatula chromosome 8 clone mth2-18d3,... 46 2.7 1
(AC145470) Medicago truncatula chromosome 8 clone mth2-6m8, ... 46 2.7 1
(AY232570) Donacia nitidior isolate N39 16S ribosomal RNA ge... 46 2.7 1
(AY138655) Ilybiosoma seriatum isolate Ilbseri2R 16S ribosom... 46 2.7 1
(AY138654) Ilybiosoma lugens 16S ribosomal RNA gene, partial... 46 2.7 1
(AY138653) Ilybiosoma seriatum isolate IlbC2.1 16S ribosomal... 46 2.7 1
(AY138652) Ilybiosoma seriatum isolate Ilb7.2R 16S ribosomal... 46 2.7 1
(AY138651) Ilybiosoma seriatum isolate Ilb7.1R 16S ribosomal... 46 2.7 1
(AY138650) Ilybiosoma perplexus 16S ribosomal RNA gene, part... 46 2.7 1
(AY138649) Ilybiosoma seriatum isolate Ilb27.3 16S ribosomal... 46 2.7 1
(AY039265) Agabus aubei 16S ribosomal RNA gene, partial sequ... 46 2.7 1
(AL354777) Human DNA sequence from clone RP11-33K8 on chromo... 46 2.7 1
(AC079349) Homo sapiens BAC clone RP11-436A7 from 4, complet... 46 2.7 1
(AC022075) Homo sapiens 12 BAC RP11-277P12 (Roswell Park Can... 46 2.7 1
(AC108376) Pan troglodytes clone S10883.BCM-22, *** SEQUENCI... 46 2.7 1
(AC079302) Homo sapiens chromosome 4 clone RP11-194O20, WORK... 46 2.7 1
(AP001391) Homo sapiens genomic DNA, chromosome 18q23 clone:... 46 2.7 1
(AC178169) Strongylocentrotus purpuratus clone R3-3081N19, W... 46 2.7 1
(AC175835) Strongylocentrotus purpuratus clone R3-3019D11, W... 46 2.7 1
(EK252554) 1095460286715 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.7 1
(CT271780) Sus scrofa genomic clone PigE-197G20, genomic sur... 46 2.7 1
(CR879400) Sus scrofa BES. 46 2.7 1
(CO153142) EN01350.5prime Exelixis FlyTag MN08 BlueScript Dr... 46 2.7 1
(CP000361) Arcobacter butzleri RM4018, complete genome. 46 2.7 1
(AC233624) Solanum tuberosum strain Diploid genotype RH89-03... 36 2.9 8
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 36 2.9 10
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 3.0 11
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 38 3.0 11
(AE017308) Mycoplasma mobile 163K complete genome. 36 3.0 13
(CR954186) Medicago truncatula chromosome 5 clone mth2-117e1... 38 3.4 5
(AL844506) Plasmodium falciparum chromosome 7. 42 3.4 15
(AC173253) Bos taurus clone CH240-411L22, WORKING DRAFT SEQU... 40 3.5 6
(AC203521) Spermophilus tridecemlineatus clone VMRC20-240L9,... 38 3.8 5
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 3.8 10
(AC095423) Rattus norvegicus clone CH230-7C18, *** SEQUENCIN... 44 4.0 6
(AX346940) Sequence 2011 from Patent WO0200928. 38 4.1 2
(AX344478) Sequence 325 from Patent WO0200926. 38 4.1 2
(BD453074) Diagnosis of Diseases Associated with tumor suppr... 38 4.1 2
(AX251553) Sequence 521 from Patent WO0168912. 38 4.1 2
(AC226508) Solanum lycopersicum chromosome 2 clone C02HBa013... 42 4.2 3
(AC021745) Homo sapiens chromosome 11 clone RP11-339D1 map 1... 44 4.3 4
(CZ250664) A16BL1.2M13R RAPD amplified fragment Antheraea my... 42 4.3 2
(BD347719) NOVEL HUMAN GENES AND GENE EXPRESSION PRODUCTS. 42 4.3 2
(AX071432) Sequence 1904 from Patent WO0102568. 42 4.3 2
(AM452377) Vitis vinifera contig VV78X261484.10, whole genom... 38 4.6 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 4.8 2
(AF466146) Melipona bicolor mitochondrial genome, partial se... 34 4.8 5
(EF506945) Leptosira terrestris UTEX 333 chloroplast, comple... 38 4.8 9
(AC159286) Mus musculus BAC clone RP23-314E22 from chromosom... 34 5.0 2
(CU469078) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 5.0 2
(AC015716) Homo sapiens clone RP11-92P3, WORKING DRAFT SEQUE... 32 5.0 2
(AC211350) Zea mays chromosome 9 clone CH201-176D15; ZMMBBc0... 34 5.0 2
(AC016833) Homo sapiens chromosome 15 clone RP11-438C24 map ... 32 5.0 2
(CU914756) S.lycopersicum DNA sequence from clone LE_HBa-244... 38 5.0 6
(AC121257) Mus musculus chromosome 14, clone RP24-202E4, com... 34 5.0 2
(AC079076) Homo sapiens chromosome 15 clone RP11-347P18 map ... 32 5.1 2
(AC110578) Homo sapiens chromosome 8 clone RP11-111G3 map 8,... 32 5.1 2
(AC090532) Homo sapiens chromosome 15 clone RP11-325L11 map ... 32 5.1 2
(AC215527) Oryza officinalis clone OO__Ba0067N19, complete s... 32 5.1 2
(AC140211) Mus musculus BAC clone RP24-474M1 from chromosome... 34 5.1 2
(AC084404) Oryza sativa chromosome 3 BAC OSJNBa0026A15 genom... 34 5.1 2
(AC091915) Homo sapiens chromosome 5 clone RP11-224A9, compl... 32 5.1 2
(AC232332) Oryza minuta clone OM__Ba0176F04, *** SEQUENCING ... 32 5.1 2
(CR352286) Zebrafish DNA sequence from clone CH211-93A20 in ... 40 5.2 6
(AC232077) Solanum tuberosum chromosome 1 clone RH095H15, **... 44 5.2 5
(AC090511) Homo sapiens chromosome 15 clone CTD-2370O8 map 1... 32 5.3 2
(EA690049) Sequence 68928 from patent US 7365185. 34 5.6 2
(AP006658) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 5.7 5
(AY487398) Stoliczkaia borneensis recombination-activating g... 42 5.7 2
(AC120522) Canis lupus familiaris clone RP81-417N7, WORKING ... 42 5.7 6
(AC202747) Chlorocebus aethiops clone CH252-322L2, WORKING D... 40 5.7 3
(CU463089) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.9 2
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29... 34 6.0 8
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 30 6.3 12
(BX957363) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 6.3 6
(AE001579) Borrelia burgdorferi B31 plasmid cp32-7, complete... 36 6.4 4
(BF297074) 046PbG07 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 42 6.5 2
(AJ311621) Entamoeba histolytica rpl27a-3 gene for ribosomal... 32 6.6 2
(AC150798) Medicago truncatula chromosome 2 clone mth2-33b11... 38 6.8 9
(AC162217) Bos taurus clone CH240-111N20, WORKING DRAFT SEQU... 34 6.9 6
(BV038647) S212P6545FG8.T0 CZECHII/Ei Mus musculus STS genom... 34 6.9 2
(DC200995) Plasmodium berghei cDNA clone:LV013862, liver sta... 34 6.9 2
(BF296234) 034PbC09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 42 7.0 2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 32 7.0 10
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 32 7.2 9
(AC165453) Bos taurus clone CH240-321L12, WORKING DRAFT SEQU... 34 7.6 8
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 34 7.6 9
(GD220397) G1045P398FF12.T1 Aplysia californica Pooled Norma... 34 7.8 2
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 34 7.9 11
(AC178877) Strongylocentrotus purpuratus clone R3-27F2, WORK... 36 8.1 7
(AC233064) Solanum lycopersicum chromosome 9 clone C09HBa016... 36 8.4 7
(AQ986478) RPCI-23-322M8.TJ RPCI-23 Mus musculus genomic clo... 38 8.4 2
(FF080094) G1045P312FE16.T0 Aplysia californica Pooled Norma... 34 8.5 2
(AC008043) Drosophila melanogaster, chromosome 3R, region 94... 38 8.7 6
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 8.8 10
(AC009101) Homo sapiens chromosome 16 clone RP11-439I14, com... 40 9.3 6
(AL034557) Plasmodium falciparum MAL4P1. 32 9.8 13
(AL355136) Human DNA sequence from clone RP11-435P18 on chro... 34 9.9 7

>(C90555) Dictyostelium discoideum slug cDNA, clone SSI718.
Length = 647

Score = 1277 bits (644), Expect = 0.0
Identities = 644/644 (100%)
Strand = Plus / Plus


Query: 246 agcagcatcagcatcacaacaaaataatcctacttcattatttgaaattacagatttaag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 agcagcatcagcatcacaacaaaataatcctacttcattatttgaaattacagatttaag 62


Query: 306 tttaaagaatgatattatagagggtttacaagaacaacctcaagattcagatctattggc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tttaaagaatgatattatagagggtttacaagaacaacctcaagattcagatctattggc 122


Query: 366 acaatatggtgtattattgtcaatggagggtaaaaataaagaagcagaagaatcattaag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 acaatatggtgtattattgtcaatggagggtaaaaataaagaagcagaagaatcattaag 182


Query: 426 gaaagctgtagaggttgatactgataactctagagcttggcaagcatatggtgaattttt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaaagctgtagaggttgatactgataactctagagcttggcaagcatatggtgaattttt 242


Query: 486 agaaagaacaaataatccaaagaaagcaaaagaagtttatggtgaagcttataaacatgc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agaaagaacaaataatccaaagaaagcaaaagaagtttatggtgaagcttataaacatgc 302


Query: 546 tgctccaaagattgcattagacgaagatgatagtagtttattattaagttatgcaatttt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgctccaaagattgcattagacgaagatgatagtagtttattattaagttatgcaatttt 362


Query: 606 cattcaaaaatcaggagaaatagataaagcagagaaattatataaaagaattgttactag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cattcaaaaatcaggagaaatagataaagcagagaaattatataaaagaattgttactag 422


Query: 666 tggtgctcgtagttcagagtcattaggtcgttatggtttattcttattggaggttaaaaa 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tggtgctcgtagttcagagtcattaggtcgttatggtttattcttattggaggttaaaaa 482


Query: 726 agatgttgaaaagggtggcatttacttaaaagatgcagcagatattgacccaccatcacc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agatgttgaaaagggtggcatttacttaaaagatgcagcagatattgacccaccatcacc 542


Query: 786 tgaatggtgtacaagatattcaaattatcttaaaacttataaaaaagatgaatttgaagc 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgaatggtgtacaagatattcaaattatcttaaaacttataaaaaagatgaatttgaagc 602


Query: 846 aacaaaatatcaaaagagagttagtttatatgtaaattaatatt 889
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aacaaaatatcaaaagagagttagtttatatgtaaattaatatt 646

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,162,373,527
Number of extensions: 76041171
Number of successful extensions: 6672464
Number of sequences better than 10.0: 194
Length of query: 1035
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1011
Effective length of database: 99,340,224,878
Effective search space: 100432967351658
Effective search space used: 100432967351658
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U02024-1 (Contig-U02024-1Q) /CSM_Contig/Contig-U02024-1Q.Seq.d
(1035 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AP009380_1340(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 68 6e-10
CP000099_2442(CP000099|pid:none) Methanosarcina barkeri str. Fus... 64 1e-08
CP000099_3087(CP000099|pid:none) Methanosarcina barkeri str. Fus... 57 8e-07
CP000099_2445(CP000099|pid:none) Methanosarcina barkeri str. Fus... 57 1e-06
FP102531_56(FP102531|pid:none) magnetite-containing magnetic vib... 53 2e-05
CP001132_2246(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 50 1e-04
CP000471_3263(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 50 1e-04
AE000666_69(AE000666|pid:none) Methanothermobacter thermautotrop... 49 4e-04
BC074400_1(BC074400|pid:none) Xenopus laevis MGC84386 protein, m... 48 5e-04
AC159432_5(AC159432|pid:none) Trypanosoma brucei chromosome 5 cl... 47 8e-04
AF305603_1(AF305603|pid:none) Borrelia burgdorferi isolate 3 LMP... 47 8e-04
AE008384_3110(AE008384|pid:none) Methanosarcina mazei strain Goe... 46 0.002
AE008384_2594(AE008384|pid:none) Methanosarcina mazei strain Goe... 46 0.002
AE000666_1549(AE000666|pid:none) Methanothermobacter thermautotr... 46 0.002
CP000095_1920(CP000095|pid:none) Prochlorococcus marinus str. NA... 45 0.003
AE017180_2600(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 45 0.004
CP000081_139(CP000081|pid:none) Leishmania major chromosome 35, ... 44 0.007
AE008384_2348(AE008384|pid:none) Methanosarcina mazei strain Goe... 44 0.009
CP000742_47(CP000742|pid:none) Methanococcus vannielii SB, compl... 44 0.009
CP000393_407(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 44 0.012
CP000698_2328(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 43 0.016
CP000386_2633(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 43 0.016
CP000095_419(CP000095|pid:none) Prochlorococcus marinus str. NAT... 43 0.016
EU955788_1(EU955788|pid:none) Zea mays clone 1546167 hypothetica... 43 0.016
AY534317_5(AY534317|pid:none) Actinobacillus pleuropneumoniae is... 43 0.016
CP000738_454(CP000738|pid:none) Sinorhizobium medicae WSM419, co... 43 0.016
CP001091_1639(CP001091|pid:none) Actinobacillus pleuropneumoniae... 43 0.016
AP006840_937(AP006840|pid:none) Symbiobacterium thermophilum IAM... 43 0.016
BX950229_873(BX950229|pid:none) Methanococcus maripaludis strain... 43 0.021
CP000099_2958(CP000099|pid:none) Methanosarcina barkeri str. Fus... 43 0.021
CP000478_5(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB,... 43 0.021
CR847783_1(CR847783|pid:none) Zebrafish DNA sequence from clone ... 42 0.027
AF305605_1(AF305605|pid:none) Borrelia burgdorferi isolate 5 LMP... 42 0.035
CP000553_44(CP000553|pid:none) Prochlorococcus marinus str. NATL... 42 0.035
AF305608_1(AF305608|pid:none) Borrelia burgdorferi isolate 8 LMP... 42 0.035
AE008384_3330(AE008384|pid:none) Methanosarcina mazei strain Goe... 42 0.035
AF305599_1(AF305599|pid:none) Borrelia burgdorferi strain B31 LM... 42 0.035
AF305607_1(AF305607|pid:none) Borrelia burgdorferi isolate 7 LMP... 42 0.035
CP001205_201(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 42 0.035
CP001357_835(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 42 0.035
AF305601_1(AF305601|pid:none) Borrelia burgdorferi isolate 1 LMP... 42 0.035
CP000140_3086(CP000140|pid:none) Parabacteroides distasonis ATCC... 42 0.046
CP001080_329(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 42 0.046
CP000514_1109(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 42 0.046
CP000254_965(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 41 0.060
AM494971_134(AM494971|pid:none) Leishmania braziliensis chromoso... 41 0.060
AE014298_282(AE014298|pid:none) Drosophila melanogaster chromoso... 41 0.060
AP007255_2357(AP007255|pid:none) Magnetospirillum magneticum AMB... 41 0.060
(Q6DCD5) RecName: Full=Transmembrane and TPR repeat-containing p... 41 0.060
CP001087_99(CP001087|pid:none) Desulfobacterium autotrophicum HR... 41 0.079
AE017226_1525(AE017226|pid:none) Treponema denticola ATCC 35405,... 41 0.079
AM114193_1631(AM114193|pid:none) Uncultured methanogenic archaeo... 41 0.079
AE010299_3171(AE010299|pid:none) Methanosarcina acetivorans str.... 41 0.079
AK044857_1(AK044857|pid:none) Mus musculus 9.5 days embryo parth... 40 0.10
AP009049_2033(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 40 0.10
CP000155_3140(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 40 0.10
AC005496_22(AC005496|pid:none) Arabidopsis thaliana chromosome 2... 40 0.10
AM778958_382(AM778958|pid:none) Microcystis aeruginosa PCC 7806 ... 40 0.10
(Q8BRH0) RecName: Full=Transmembrane and TPR repeat-containing p... 40 0.10
AK119028_1(AK119028|pid:none) Arabidopsis thaliana At2g29670 mRN... 40 0.10
CP000477_86(CP000477|pid:none) Methanosaeta thermophila PT, comp... 40 0.13
CP000769_2916(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 40 0.13
(Q56A06) RecName: Full=Transmembrane and TPR repeat-containing p... 40 0.13
T11665(T11665)probable cell division cycle protein - fission yea... 40 0.13
AM455445_2(AM455445|pid:none) Vitis vinifera contig VV78X036406.... 40 0.13
CR352306_2(CR352306|pid:none) Zebrafish DNA sequence from clone ... 40 0.13
AE008384_44(AE008384|pid:none) Methanosarcina mazei strain Goe1,... 40 0.13
CP000108_1674(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 40 0.13
CP000494_2214(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 40 0.13
AP010656_183(AP010656|pid:none) Candidatus Azobacteroides pseudo... 40 0.13
CP000553_1814(CP000553|pid:none) Prochlorococcus marinus str. NA... 40 0.13
CP000095_378(CP000095|pid:none) Prochlorococcus marinus str. NAT... 40 0.17
CP000254_2541(CP000254|pid:none) Methanospirillum hungatei JF-1,... 40 0.17
CP001230_1906(CP001230|pid:none) Persephonella marina EX-H1, com... 40 0.17
CU234118_1905(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 40 0.17
AE008384_99(AE008384|pid:none) Methanosarcina mazei strain Goe1,... 40 0.17
(Q8N394) RecName: Full=Transmembrane and TPR repeat-containing p... 39 0.23
AX795394_1(AX795394|pid:none) Sequence 3 from Patent WO03052412. 39 0.23
CP000251_3404(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 39 0.23
AP010904_2050(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 39 0.23
AE010299_1324(AE010299|pid:none) Methanosarcina acetivorans str.... 39 0.23
CP001322_5229(CP001322|pid:none) Desulfatibacillum alkenivorans ... 39 0.23
CP000099_3513(CP000099|pid:none) Methanosarcina barkeri str. Fus... 39 0.23
CP001287_3133(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 39 0.23
AY065061_1(AY065061|pid:none) Arabidopsis thaliana At1g07280/F22... 39 0.23
CP000099_10(CP000099|pid:none) Methanosarcina barkeri str. Fusar... 39 0.23
AK299771_1(AK299771|pid:none) Homo sapiens cDNA FLJ54938 complet... 39 0.23
CP000777_436(CP000777|pid:none) Leptospira biflexa serovar Patoc... 39 0.30
CP001390_358(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 39 0.30
AK055962_1(AK055962|pid:none) Homo sapiens cDNA FLJ31400 fis, cl... 39 0.30
AK123619_1(AK123619|pid:none) Homo sapiens cDNA FLJ41625 fis, cl... 39 0.30
CP000553_1813(CP000553|pid:none) Prochlorococcus marinus str. NA... 39 0.30
CP000859_2619(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 39 0.39
CU633448_198(CU633448|pid:none) Podospora anserina genomic DNA c... 39 0.39
CP000013_208(CP000013|pid:none) Borrelia garinii PBi, complete g... 39 0.39
CP000254_783(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 39 0.39
CP000494_4082(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 39 0.39
CP000393_2497(CP000393|pid:none) Trichodesmium erythraeum IMS101... 39 0.39
CP000554_2375(CP000554|pid:none) Prochlorococcus marinus str. MI... 39 0.39
CP000699_1055(CP000699|pid:none) Sphingomonas wittichii RW1, com... 39 0.39
AE010299_3605(AE010299|pid:none) Methanosarcina acetivorans str.... 39 0.39
CP000777_2728(CP000777|pid:none) Leptospira biflexa serovar Pato... 39 0.39
CP000554_2396(CP000554|pid:none) Prochlorococcus marinus str. MI... 38 0.51
BT053167_1(BT053167|pid:none) Medicago truncatula clone MTYFL_FM... 38 0.51
CP000254_2327(CP000254|pid:none) Methanospirillum hungatei JF-1,... 38 0.51
CP000473_1913(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 38 0.66
CP000095_1620(CP000095|pid:none) Prochlorococcus marinus str. NA... 38 0.66
AM424139_3(AM424139|pid:none) Vitis vinifera contig VV78X033795.... 38 0.66
CP001472_158(CP001472|pid:none) Acidobacterium capsulatum ATCC 5... 38 0.66
CR790375_1(CR790375|pid:none) Zebrafish DNA sequence from clone ... 38 0.66
CP000521_478(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 38 0.66
BA000040_7118(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 38 0.66
CP000744_5252(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 37 0.87
CU210900_2(CU210900|pid:none) Mouse DNA sequence from clone CH29... 37 0.87
CP001130_1028(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c... 37 0.87
BC079997_1(BC079997|pid:none) Xenopus laevis hypothetical protei... 37 0.87
CP000878_1442(CP000878|pid:none) Prochlorococcus marinus str. MI... 37 0.87
AK070000_1(AK070000|pid:none) Oryza sativa Japonica Group cDNA c... 37 0.87
CP000463_2648(CP000463|pid:none) Rhodopseudomonas palustris BisA... 37 0.87
BC115724_1(BC115724|pid:none) Mus musculus nephronophthisis 3 (a... 37 0.87
CP000473_3282(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 37 0.87
AK173327_1(AK173327|pid:none) Mus musculus mRNA for mKIAA2000 pr... 37 0.87
CP000438_4974(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 37 0.87
AP003442_21(AP003442|pid:none) Oryza sativa Japonica Group genom... 37 0.87
CR555306_2082(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 37 0.87
CP000095_38(CP000095|pid:none) Prochlorococcus marinus str. NATL... 37 0.87
CP000095_2064(CP000095|pid:none) Prochlorococcus marinus str. NA... 37 0.87
AK046396_1(AK046396|pid:none) Mus musculus adult male corpora qu... 37 0.87
CP000248_1666(CP000248|pid:none) Novosphingobium aromaticivorans... 37 1.1
CP000099_270(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 37 1.1
CR936640_1(CR936640|pid:none) Homo sapiens mRNA; cDNA DKFZp686O2... 37 1.1
AE001437_2952(AE001437|pid:none) Clostridium acetobutylicum ATCC... 37 1.1
AK290436_1(AK290436|pid:none) Homo sapiens cDNA FLJ78524 complet... 37 1.1
BA000045_1119(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 37 1.1
AK302755_1(AK302755|pid:none) Homo sapiens cDNA FLJ52097 complet... 37 1.1
(P42810) RecName: Full=TPR repeat-containing protein PA4667; &A... 37 1.1
CP001197_2712(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 37 1.1
CP000510_1131(CP000510|pid:none) Psychromonas ingrahamii 37, com... 37 1.1
CR933632_1(CR933632|pid:none) Homo sapiens mRNA; cDNA DKFZp686C0... 37 1.1
BC098811_1(BC098811|pid:none) Rattus norvegicus tetratricopeptid... 37 1.1
AE008384_2350(AE008384|pid:none) Methanosarcina mazei strain Goe... 37 1.1
CP000507_2359(CP000507|pid:none) Shewanella amazonensis SB2B, co... 37 1.1
CP001323_83(CP001323|pid:none) Micromonas sp. RCC299 chromosome ... 37 1.1
CP000655_487(CP000655|pid:none) Polynucleobacter necessarius sub... 37 1.1
AC022464_38(AC022464|pid:none) Genomic sequence for Arabidopsis ... 37 1.1
CP001348_1156(CP001348|pid:none) Clostridium cellulolyticum H10,... 37 1.1
BC034657_1(BC034657|pid:none) Mus musculus transmembrane and tet... 37 1.1
CR749244_1(CR749244|pid:none) Homo sapiens mRNA; cDNA DKFZp686M1... 37 1.1
CP001147_1446(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 37 1.1
CP000393_1249(CP000393|pid:none) Trichodesmium erythraeum IMS101... 37 1.1
CT573072_233(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 37 1.1
AB082531_1(AB082531|pid:none) Homo sapiens mRNA for KIAA2000 pro... 37 1.5
CP000926_2490(CP000926|pid:none) Pseudomonas putida GB-1, comple... 37 1.5
CP001172_2978(CP001172|pid:none) Acinetobacter baumannii AB307-0... 37 1.5
CP000740_646(CP000740|pid:none) Sinorhizobium medicae WSM419 pla... 37 1.5
(Q6ZXV5) RecName: Full=Transmembrane and TPR repeat-containing p... 37 1.5
(Q8NCM5) RecName: Full=Nephrocystin-3; &AY257864_1(AY257864|pid... 37 1.5
AE006470_1607(AE006470|pid:none) Chlorobium tepidum TLS, complet... 37 1.5
CP000562_1307(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 37 1.5
AC133341_21(AC133341|pid:none) Medicago truncatula clone mth2-28... 37 1.5
EF592032_1(EF592032|pid:none) Chlamydomonas reinhardtii intrafla... 37 1.5
CP000554_2385(CP000554|pid:none) Prochlorococcus marinus str. MI... 37 1.5
AE015924_826(AE015924|pid:none) Porphyromonas gingivalis W83, co... 37 1.5
AK165838_1(AK165838|pid:none) Mus musculus lung RCB-0558 LLC cDN... 37 1.5
AP009380_996(AP009380|pid:none) Porphyromonas gingivalis ATCC 33... 37 1.5
CP000492_1780(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 37 1.5
CR749309_1(CR749309|pid:none) Homo sapiens mRNA; cDNA DKFZp686O2... 37 1.5
AP010904_2948(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 37 1.5
CU459141_3073(CU459141|pid:none) Acinetobacter baumannii str. AY... 37 1.5
CP000828_559(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 37 1.5
BX908798_171(BX908798|pid:none) Parachlamydia-related symbiont U... 37 1.5
CP000551_38(CP000551|pid:none) Prochlorococcus marinus str. AS96... 37 1.5
CP000867_1767(CP000867|pid:none) Methanococcus maripaludis C6, c... 37 1.5
CP000554_2037(CP000554|pid:none) Prochlorococcus marinus str. MI... 37 1.5
EF083286_1(EF083286|pid:none) Picea sitchensis clone WS0282_K03 ... 36 1.9
CP001638_2249(CP001638|pid:none) Geobacillus sp. WCH70, complete... 36 1.9
AE015928_1326(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 36 1.9
CP001110_581(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 36 1.9
EU969720_1(EU969720|pid:none) Zea mays clone 334652 hypothetical... 36 1.9
CP000077_1892(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 36 1.9
AE017226_985(AE017226|pid:none) Treponema denticola ATCC 35405, ... 36 1.9
AL133292_13(AL133292|pid:none) Arabidopsis thaliana DNA chromoso... 36 1.9
EU970782_1(EU970782|pid:none) Zea mays clone 350762 hypothetical... 36 1.9
AK052344_1(AK052344|pid:none) Mus musculus 13 days embryo heart ... 36 1.9
CP001322_133(CP001322|pid:none) Desulfatibacillum alkenivorans A... 36 1.9
AK039560_1(AK039560|pid:none) Mus musculus adult male spinal cor... 36 2.5
AF000196_4(AF000196|pid:none) Caenorhabditis elegans cosmid B004... 36 2.5
AY087263_1(AY087263|pid:none) Arabidopsis thaliana clone 33385 m... 36 2.5
FM954972_2311(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 36 2.5
AE008384_2720(AE008384|pid:none) Methanosarcina mazei strain Goe... 36 2.5
AK226990_1(AK226990|pid:none) Arabidopsis thaliana mRNA for hypo... 36 2.5
CU234118_4939(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 36 2.5
CP000576_40(CP000576|pid:none) Prochlorococcus marinus str. MIT ... 36 2.5
T34032(T34032)hypothetical protein B0041.5 - Caenorhabditis eleg... 36 2.5
FP312975_7(FP312975|pid:none) uncultured bacterial clone magm950... 36 2.5
AB026636_11(AB026636|pid:none) Arabidopsis thaliana genomic DNA,... 36 2.5
AY093112_1(AY093112|pid:none) Arabidopsis thaliana unknown prote... 36 2.5
AL021889_12(AL021889|pid:none) Arabidopsis thaliana DNA chromoso... 36 2.5
(Q8C1Z7) RecName: Full=Bardet-Biedl syndrome 4 protein homolog; ... 36 2.5
BC055797_1(BC055797|pid:none) Mus musculus Bardet-Biedl syndrome... 36 2.5
BC092531_1(BC092531|pid:none) Mus musculus Bardet-Biedl syndrome... 36 2.5
AM486621_1(AM486621|pid:none) Vitis vinifera contig VV78X034347.... 36 2.5
CP001087_2236(CP001087|pid:none) Desulfobacterium autotrophicum ... 36 2.5
AE016853_3035(AE016853|pid:none) Pseudomonas syringae pv. tomato... 35 3.3
BC111487_1(BC111487|pid:none) Homo sapiens tetratricopeptide rep... 35 3.3
BC114365_1(BC114365|pid:none) Homo sapiens tetratricopeptide rep... 35 3.3
CP001132_197(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 35 3.3
AK165244_1(AK165244|pid:none) Mus musculus 6 days neonate spleen... 35 3.3
CP000781_1371(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 35 3.3
AL834383_1(AL834383|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0... 35 3.3
CP000494_5334(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 35 3.3
AE004091_3804(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 35 3.3
CP000438_1172(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 35 3.3
AB032966_1(AB032966|pid:none) Homo sapiens mRNA for KIAA1140 pro... 35 3.3
BC027457_1(BC027457|pid:none) Homo sapiens tetratricopeptide rep... 35 3.3
BC035708_1(BC035708|pid:none) Homo sapiens tetratricopeptide rep... 35 3.3
CP000539_884(CP000539|pid:none) Acidovorax sp. JS42, complete ge... 35 3.3
CP000544_551(CP000544|pid:none) Halorhodospira halophila SL1, co... 35 3.3
BA000022_2661(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 35 3.3
CP000473_3686(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 3.3
BX908798_172(BX908798|pid:none) Parachlamydia-related symbiont U... 35 3.3
CP000254_96(CP000254|pid:none) Methanospirillum hungatei JF-1, c... 35 3.3
AM114193_386(AM114193|pid:none) Uncultured methanogenic archaeon... 35 3.3
(P33292) RecName: Full=Peroxisomal targeting signal receptor; ... 35 3.3
CP000477_492(CP000477|pid:none) Methanosaeta thermophila PT, com... 35 3.3
AK056464_1(AK056464|pid:none) Homo sapiens cDNA FLJ31902 fis, cl... 35 3.3
JC5302(JC5302) PilF protein - Pseudomonas aeruginosa &L49434_2(... 35 3.3
AE010299_2135(AE010299|pid:none) Methanosarcina acetivorans str.... 35 3.3
CR378673_218(CR378673|pid:none) Photobacterium profundum SS9; se... 35 3.3
CP000612_1726(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 35 4.3
AE010299_1572(AE010299|pid:none) Methanosarcina acetivorans str.... 35 4.3
CP000633_2825(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 35 4.3
CP000254_1872(CP000254|pid:none) Methanospirillum hungatei JF-1,... 35 4.3
DQ139261_10(DQ139261|pid:none) Vibro sp. DAT722 inDAT722 integro... 35 4.3
CP000554_2384(CP000554|pid:none) Prochlorococcus marinus str. MI... 35 4.3
AP009380_1899(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 35 4.3
AE010299_1919(AE010299|pid:none) Methanosarcina acetivorans str.... 35 4.3
CP001392_816(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 35 4.3
CP001635_529(CP001635|pid:none) Variovorax paradoxus S110 chromo... 35 4.3
DQ068067_67(DQ068067|pid:none) Uncultured bacterium BAC13K9BAC, ... 35 4.3
AY070455_1(AY070455|pid:none) Arabidopsis thaliana putative TPR ... 35 4.3
AC006413_3(AC006413|pid:none) Arabidopsis thaliana chromosome 2 ... 35 4.3
CP000553_45(CP000553|pid:none) Prochlorococcus marinus str. NATL... 35 4.3
CP000319_374(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 35 4.3
AM889285_2405(AM889285|pid:none) Gluconacetobacter diazotrophicu... 35 4.3
CP000609_675(CP000609|pid:none) Methanococcus maripaludis C5, co... 35 4.3
AF305612_1(AF305612|pid:none) Borrelia burgdorferi strain pGau L... 35 4.3
CR858933_1(CR858933|pid:none) Pongo abelii mRNA; cDNA DKFZp469G2... 35 4.3
AY049236_1(AY049236|pid:none) Arabidopsis thaliana AT5g63200/MDC... 35 5.6
AB008265_17(AB008265|pid:none) Arabidopsis thaliana genomic DNA,... 35 5.6
AK175599_1(AK175599|pid:none) Arabidopsis thaliana mRNA, complet... 35 5.6
AE008384_2801(AE008384|pid:none) Methanosarcina mazei strain Goe... 35 5.6
(Q8RVB2) RecName: Full=Probable UDP-N-acetylglucosamine--peptide... 35 5.6
CP000553_1568(CP000553|pid:none) Prochlorococcus marinus str. NA... 35 5.6
CP000049_201(CP000049|pid:none) Borrelia turicatae 91E135, compl... 35 5.6
CP000482_3281(CP000482|pid:none) Pelobacter propionicus DSM 2379... 35 5.6
CP000544_1502(CP000544|pid:none) Halorhodospira halophila SL1, c... 35 5.6
CP000712_866(CP000712|pid:none) Pseudomonas putida F1, complete ... 35 5.6
CP000492_1779(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 35 5.6
(O94474) RecName: Full=Superkiller protein 3; &AL035075_5(AL035... 35 5.6
CP000655_1164(CP000655|pid:none) Polynucleobacter necessarius su... 35 5.6
AL954747_2160(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 35 5.6
AE017282_1434(AE017282|pid:none) Methylococcus capsulatus str. B... 35 5.6
CP000804_209(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 35 5.6
BX294151_216(BX294151|pid:none) Rhodopirellula baltica SH 1 comp... 35 5.6
AY267659_1(AY267659|pid:none) Bigelowiella natans PsbA maturatio... 35 5.6
CP000961_1529(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 35 5.6
AE017221_263(AE017221|pid:none) Thermus thermophilus HB27, compl... 35 5.6
CP001330_227(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 35 5.6
CP001291_1331(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 5.6
AE014296_1547(AE014296|pid:none) Drosophila melanogaster chromos... 34 7.3
CP001357_366(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 34 7.3
CP000076_5089(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 34 7.3
CP000774_2663(CP000774|pid:none) Parvibaculum lavamentivorans DS... 34 7.3
AE017343_582(AE017343|pid:none) Cryptococcus neoformans var. neo... 34 7.3
CP000780_2357(CP000780|pid:none) Candidatus Methanoregula boonei... 34 7.3
AP008209_1265(AP008209|pid:none) Oryza sativa (japonica cultivar... 34 7.3
CP000102_1280(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 34 7.3
CP001055_296(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 34 7.3
CP001089_3342(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 34 7.3
CP000240_1532(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 34 7.3
AM455421_1(AM455421|pid:none) Vitis vinifera contig VV78X212299.... 34 7.3
(O82039) RecName: Full=Probable UDP-N-acetylglucosamine--peptide... 34 7.3
CP001229_912(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 34 7.3
BC166212_1(BC166212|pid:none) Xenopus tropicalis tetratricopepti... 34 7.3
CP000099_408(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 34 7.3
BA000012_2044(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 34 7.3
CP000482_1062(CP000482|pid:none) Pelobacter propionicus DSM 2379... 34 7.3
CP001147_1402(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 34 7.3
BC059994_1(BC059994|pid:none) Xenopus laevis Translocase of oute... 34 7.3
CP000828_1346(CP000828|pid:none) Acaryochloris marina MBIC11017,... 34 7.3
AM286690_1862(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 34 7.3
AP009552_3058(AP009552|pid:none) Microcystis aeruginosa NIES-843... 34 9.6
(Q9FNS4) RecName: Full=PsbB mRNA maturation factor Mbb1, chlorop... 34 9.6
CP000393_4193(CP000393|pid:none) Trichodesmium erythraeum IMS101... 34 9.6
CP001124_1750(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 34 9.6
CP000254_2334(CP000254|pid:none) Methanospirillum hungatei JF-1,... 34 9.6
CP000478_73(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB... 34 9.6
BC077424_1(BC077424|pid:none) Xenopus laevis ubiquitously transc... 34 9.6
AG1971(AG1971) hypothetical protein all1322 [imported] - Nostoc ... 34 9.6
AE017180_1537(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 34 9.6
AE010300_465(AE010300|pid:none) Leptospira interrogans serovar l... 34 9.6
CP001110_1364(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 34 9.6
BX842652_271(BX842652|pid:none) Bdellovibrio bacteriovorus compl... 34 9.6
CP000817_1908(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 34 9.6
CP000884_5003(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 34 9.6
CP001107_3145(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 34 9.6
BC161298_1(BC161298|pid:none) Xenopus tropicalis hypothetical pr... 34 9.6
AK028333_1(AK028333|pid:none) Mus musculus 12 days embryo embryo... 34 9.6
BC166723_1(BC166723|pid:none) Rattus norvegicus transmembrane an... 34 9.6
CP001037_4728(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 34 9.6
CP000951_2520(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 34 9.6

>AP009380_1340(AP009380|pid:none) Porphyromonas gingivalis ATCC 33277
DNA, complete genome.
Length = 987

Score = 67.8 bits (164), Expect = 6e-10
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +1

Query: 331 LQEQPQDSDLLAQYGVLL-SMEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNNPK 507
L+ P ++ L Y L + +AE ++A+E D N Y FL +
Sbjct: 592 LEVGPNHANNLGNYASFLHDIRHAYDQAEAYYKRALEADPKNVVTLGNYANFLCNIRHAY 651

Query: 508 KAKEVYGEAYKHAAPKIAXXXXXXXXXXXYAIFIQK-SGEIDKAEKLYKRIVTSGARSSE 684
EVY A PK A YA+F+ + D+AE+ YK+ + + +++
Sbjct: 652 DQAEVYYRRALEADPKNAVTLGN------YAVFLNDIRHDYDQAERYYKKALDADQKNAN 705

Query: 685 SLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRYSNYLKTYKKDEFEATKYQKR 864
+LG Y +FL ++ D ++G Y K A D DP Y+++L T + +A Y KR
Sbjct: 706 ALGNYAVFLNNIRHDYDQGERYYKKALDADPNHANTLGNYASFLHTIRHAYDQAEVYYKR 765

Score = 66.6 bits (161), Expect = 1e-09
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 10/206 (4%)
Frame = +1

Query: 247 AASASQQN-NPTSLFEITDLSLKNDIIEG-------LQEQPQDSDLLAQYGVLL-SMEGK 399
A A Q+N N + + ++++D +G L P ++ L Y L ++
Sbjct: 696 ALDADQKNANALGNYAVFLNNIRHDYDQGERYYKKALDADPNHANTLGNYASFLHTIRHA 755

Query: 400 NKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNNPKKAKEVYGEAYKHAAPKIAXXXXXX 579
+AE ++A+E D +++ + Y FL + EVY + A P A
Sbjct: 756 YDQAEVYYKRALEADPNHANTLRNYALFLHIIRHAYDQAEVYYKRALEADPNHANNLGN- 814

Query: 580 XXXXXYAIFIQKSGEI-DKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLK 756
YA+F+Q D+AE YKR + + +++ +LG Y LFL ++ D ++ Y K
Sbjct: 815 -----YALFLQDIRHAYDQAESYYKRGLEADPKNANNLGNYALFLNNIRHDYDQAETYYK 869

Query: 757 DAADIDPPSPEWCTRYSNYLKTYKKD 834
A ++DP S Y+++L T + D
Sbjct: 870 RALEVDPKSANKLGNYAHFLITCRGD 895

Score = 62.4 bits (150), Expect = 3e-08
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 2/182 (1%)
Frame = +1

Query: 325 EGLQEQPQDSDLLAQYGVLL-SMEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNN 501
+ L+ P++++ L Y L ++ +AE ++A+E D +++ + Y FL +
Sbjct: 485 QALEADPKNANALGNYASFLHTIRHAYDQAEAYYKRALEADPNHANTFGNYANFLCNIRH 544

Query: 502 PKKAKEVYGEAYKHAAPKIAXXXXXXXXXXXYAIFIQKSGEI-DKAEKLYKRIVTSGARS 678
EVY + A P A YA+F+ D+AE YKR + G
Sbjct: 545 AYDQAEVYYKQALEADPNHANTLGN------YALFLHTIRHAYDQAETYYKRALEVGPNH 598

Query: 679 SESLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRYSNYLKTYKKDEFEATKYQ 858
+ +LG Y FL +++ ++ Y K A + DP + Y+N+L + +A Y
Sbjct: 599 ANNLGNYASFLHDIRHAYDQAEAYYKRALEADPKNVVTLGNYANFLCNIRHAYDQAEVYY 658

Query: 859 KR 864
+R
Sbjct: 659 RR 660

Score = 62.0 bits (149), Expect = 3e-08
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 3/193 (1%)
Frame = +1

Query: 295 TDLSLKNDII-EGLQEQPQDSDLLAQYGVLL-SMEGKNKEAEESLRKAVEVDTDNSRAWQ 468
TD+ K+ I EG+ + PQD++LL Y L ++ +AE ++A+E D N+
Sbjct: 369 TDIDKKDKIYQEGIAKYPQDANLLGDYANFLHTIRHDYDQAEMYYKQALEADPKNAITLG 428

Query: 469 AYGEFLERTNNPKKAKEVYGEAYKHAAPKIAXXXXXXXXXXXYAIFIQKSGEI-DKAEKL 645
Y FL NN + A Y +A ++ + YA F+ D+AE
Sbjct: 429 NYAVFL---NNIRHA---YDQAERYYKQALEADPNHANTLGNYANFLCNIRHAYDQAEVY 482

Query: 646 YKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRYSNYLKTY 825
YK+ + + +++ +LG Y FL ++ ++ Y K A + DP Y+N+L
Sbjct: 483 YKQALEADPKNANALGNYASFLHTIRHAYDQAEAYYKRALEADPNHANTFGNYANFLCNI 542

Query: 826 KKDEFEATKYQKR 864
+ +A Y K+
Sbjct: 543 RHAYDQAEVYYKQ 555

Score = 60.1 bits (144), Expect = 1e-07
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 2/182 (1%)
Frame = +1

Query: 325 EGLQEQPQDSDLLAQYGVLLS-MEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNN 501
+ L ++++ L Y V L+ + + E +KA++ D +++ Y FL +
Sbjct: 695 KALDADQKNANALGNYAVFLNNIRHDYDQGERYYKKALDADPNHANTLGNYASFLHTIRH 754

Query: 502 PKKAKEVYGEAYKHAAPKIAXXXXXXXXXXXYAIFIQKSGEI-DKAEKLYKRIVTSGARS 678
EVY + A P A YA+F+ D+AE YKR + +
Sbjct: 755 AYDQAEVYYKRALEADPNHANTLRN------YALFLHIIRHAYDQAEVYYKRALEADPNH 808

Query: 679 SESLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRYSNYLKTYKKDEFEATKYQ 858
+ +LG Y LFL +++ ++ Y K + DP + Y+ +L + D +A Y
Sbjct: 809 ANNLGNYALFLQDIRHAYDQAESYYKRGLEADPKNANNLGNYALFLNNIRHDYDQAETYY 868

Query: 859 KR 864
KR
Sbjct: 869 KR 870

Score = 49.3 bits (116), Expect = 2e-04
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Frame = +1

Query: 331 LQEQPQDSDLLAQYGVLLSM-EGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNNPK 507
L+ P ++ L Y + L + +AE ++A+E D +++ Y FL+ +
Sbjct: 767 LEADPNHANTLRNYALFLHIIRHAYDQAEVYYKRALEADPNHANNLGNYALFLQDIRHAY 826

Query: 508 KAKEVYGEAYKHAAPKIAXXXXXXXXXXXYAIFIQK-SGEIDKAEKLYKRIVTSGARSSE 684
E Y + A PK A YA+F+ + D+AE YKR + +S+
Sbjct: 827 DQAESYYKRGLEADPKNANNLGN------YALFLNNIRHDYDQAETYYKRALEVDPKSAN 880

Query: 685 SLGRYGLFLLEVKKDVEKGGIYLKDA---ADIDPPSPE-----WCTRYSNYLKTY 825
LG Y FL+ + D ++ ++ A AD D + W RY++Y + +
Sbjct: 881 KLGNYAHFLITCRGDFKRADSLIQQAFENADNDEETKPLQAKLWFYRYAHYYEEW 935

Score = 43.5 bits (101), Expect = 0.012
Identities = 22/90 (24%), Positives = 43/90 (47%)
Frame = +1

Query: 595 YAIFIQKSGEIDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADID 774
Y + +IDK +K+Y+ + + + LG Y FL ++ D ++ +Y K A + D
Sbjct: 361 YLFDANQETDIDKKDKIYQEGIAKYPQDANLLGDYANFLHTIRHDYDQAEMYYKQALEAD 420

Query: 775 PPSPEWCTRYSNYLKTYKKDEFEATKYQKR 864
P + Y+ +L + +A +Y K+
Sbjct: 421 PKNAITLGNYAVFLNNIRHAYDQAERYYKQ 450

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 959,798,231
Number of extensions: 15026849
Number of successful extensions: 44518
Number of sequences better than 10.0: 312
Number of HSP's gapped: 44356
Number of HSP's successfully gapped: 378
Length of query: 345
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 216
Effective length of database: 633,664,753
Effective search space: 136871586648
Effective search space used: 136871586648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.39 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U02024-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0