>Contig-U12992-1 (Contig-U12992-1Q) /CSM_Contig/Contig-U12992-1Q.Seq.d
ATTGTTTTATTTTTAATATATATGTAATACTAAAAAAAATTATTTATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGGGNN
NTNNAAAAAANNNNNNNNN

est1=CHG757F,1,110

CFIFNIYVILKKIIYKKKKKKKKKKKKKKKXGXXKKXXX

Frame A:
ivlfliym*y*kklfikkkkkkkkkkkkkkkxgxxkxxx


Frame B:
lfyf*yicntkknyl*kkkkkkkkkkkkkkkxxxxkxxx


Frame C:
CFIFNIYVILKKIIYKKKKKKKKKKKKKKKXGXXKKXXX

Query= Contig-U12992-1 (Contig-U12992-1Q)
/CSM_Contig/Contig-U12992-1Q.Seq.d
         (119 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12992-1 (Contig-U12992-1Q) /CSM_Contig/Conti...    94  4e-20
Contig-U11778-1 (Contig-U11778-1Q) /CSM_Contig/Conti...    42  1e-04
Contig-U14661-1 (Contig-U14661-1Q) /CSM_Contig/Conti...    36  0.008
Contig-U11834-1 (Contig-U11834-1Q) /CSM_Contig/Conti...    36  0.008
Contig-U09498-1 (Contig-U09498-1Q) /CSM_Contig/Conti...    36  0.008
Contig-U04484-1 (Contig-U04484-1Q) /CSM_Contig/Conti...    36  0.008
Contig-U01917-1 (Contig-U01917-1Q) /CSM_Contig/Conti...    36  0.008
Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Conti...    34  0.030
Contig-U12702-1 (Contig-U12702-1Q) /CSM_Contig/Conti...    34  0.030
Contig-U11744-1 (Contig-U11744-1Q) /CSM_Contig/Conti...    34  0.030

>Contig-U12992-1 (Contig-U12992-1Q) /CSM_Contig/Contig-U12992-1Q.Seq.d
          Length = 119

 Score = 93.7 bits (47), Expect = 4e-20
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                         
Query: 1  attgttttatttttaatatatatgtaatactaaaaaaaattatttat 47
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  attgttttatttttaatatatatgtaatactaaaaaaaattatttat 47


>Contig-U11778-1 (Contig-U11778-1Q) /CSM_Contig/Contig-U11778-1Q.Seq.d
          Length = 1693

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 5    ttttatttttaatatatatgtaata 29
            |||||||||| ||||||||||||||
Sbjct: 1632 ttttattttttatatatatgtaata 1608


>Contig-U14661-1 (Contig-U14661-1Q) /CSM_Contig/Contig-U14661-1Q.Seq.d
          Length = 162

 Score = 36.2 bits (18), Expect = 0.008
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 6   tttatttttaatatatat 23
           ||||||||||||||||||
Sbjct: 132 tttatttttaatatatat 115


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5056
Number of Sequences: 6905
Number of extensions: 5056
Number of successful extensions: 1605
Number of sequences better than 10.0: 608
length of query: 119
length of database: 5,674,871
effective HSP length: 14
effective length of query: 105
effective length of database: 5,578,201
effective search space: 585711105
effective search space used: 585711105
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U12992-1 (Contig-U12992-1Q) /CSM_Contig/Contig-U12992-1Q.Seq.d
         (119 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ365473) Dictyostelium discoideum cDNA clone:ddc35b15, 5' ...    62   4e-06  1
(BJ367608) Dictyostelium discoideum cDNA clone:ddc43h12, 5' ...    60   2e-05  1
(AC152757) Bos taurus clone CH240-17C17, WORKING DRAFT SEQUE...    52   0.004  1
(AC171547) Bos taurus clone CH240-301A8, WORKING DRAFT SEQUE...    52   0.004  1
(DT222739) JGI_CAAS17919.rev CAAS Pimephales promelas brain ...    48   0.061  1
(AZ525954) 250PbA08 Pb MBN #21 Plasmodium berghei genomic 3'...    46   0.24   1
(CL412042) RPCI44_430I16.r RPCI-44 Sus scrofa genomic clone ...    32   0.70   2
(AL935115) Zebrafish DNA sequence from clone CH211-199D18 in...    44   0.96   1
(AL954215) Pan troglodytes chromosome 22 clone RP43-034B14 m...    44   0.96   1
(AL954214) Pan troglodytes chromosome 22 clone PTB-026G12 ma...    44   0.96   1
(AC204336) Macaca mulatta  BAC CH250-521M11 () complete sequ...    44   0.96   1
(AC198051) Pongo abelii BAC clone CH276-214G22 from chromoso...    44   0.96   1
(AC197588) Pongo abelii BAC clone CH276-516L3 from chromosom...    44   0.96   1
(AC185989) Pan troglodytes BAC clone CH251-378D15 from chrom...    44   0.96   1
(DD213111) The gene for progress after HCV infection, and us...    44   0.96   1
(CS789127) Sequence 383 from Patent WO2005031001.                  44   0.96   1
(AX347058) Sequence 2129 from Patent WO0200928.                    44   0.96   1
(AR659791) Sequence 832 from patent US 6900016.                    44   0.96   1
(Z97348) Plasmodium falciparum MAL3P1.                             44   0.96   1
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    44   0.96   1
(BC042094) Homo sapiens, clone IMAGE:5767628, mRNA.                44   0.96   1
(AY740397) Homo sapiens interferon (alpha, beta and omega) r...    44   0.96   1
(AP001716) Homo sapiens genomic DNA, chromosome 21q, section...    44   0.96   1
(AP000292) Homo sapiens genomic DNA, chromosome 21q22.1, D21...    44   0.96   1
(AP000187) Homo sapiens genomic DNA, chromosome 21q22.1, D21...    44   0.96   1
(AP000111) Homo sapiens genomic DNA of 21q22.1, GART and AML...    44   0.96   1
(AP000043) Homo sapiens genomic DNA, chromosome 21q22.1, seg...    44   0.96   1
(AL954650) Human DNA sequence from clone RP11-523M19 on chro...    44   0.96   1
(AF039905) Homo sapiens cosmid Q95D4, chromosome 21 5' of IF...    44   0.96   1
(AC156668) Bos taurus clone CH240-65I7, WORKING DRAFT SEQUEN...    44   0.96   1
(AC145004) Papio anubis clone RP41-206O9, WORKING DRAFT SEQU...    44   0.96   1
(AC144369) Papio anubis clone RP41-422F6, WORKING DRAFT SEQU...    44   0.96   1
(AC123147) Rattus norvegicus clone CH230-333E19, *** SEQUENC...    44   0.96   1
(AC121422) Rattus norvegicus clone CH230-115B8, WORKING DRAF...    44   0.96   1
(AC192673) Chlorocebus aethiops clone CH252-371P19, WORKING ...    44   0.96   1
(AC190357) Nomascus leucogenys leucogenys clone CH271-342C12...    44   0.96   1
(AC175375) Colobus guereza clone CH272-466J15, WORKING DRAFT...    44   0.96   1
(AC172243) Macaca mulatta clone CH250-384J16, WORKING DRAFT ...    44   0.96   1
(AC169171) Rhinolophus ferrumequinum clone VMRC7-347H10, WOR...    44   0.96   1
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **...    44   0.96   1
(AQ514260) HS_5194_B2_A10_T7A RPCI-11 Human Male BAC Library...    44   0.96   1
(EJ432355) 1093015262976 Global-Ocean-Sampling_GS-28-01-01-1...    44   0.96   1
(EI188391) DH__Ba0061A01.f DH__Ba Drosophila hydei genomic c...    44   0.96   1
(EC718300) MJE00002238 Malawimonas jakobiformis Home made (1...    44   0.96   1
(CR737809) RZPD Homo sapiens cDNA clone IMAGp998C114459 = IM...    44   0.96   1
(CO729508) Hm_pupb_01D09_pBACe3.6_t7 Heliconius melpomene pu...    44   0.96   1
(AM055366) Polyplastron multivesiculatum EST, clone Pm01_H05.      44   0.96   1
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    32   1.9    2
(AC167656) Sorex araneus clone SA_Ba-450B19, WORKING DRAFT S...    34   1.9    2
(CW414306) fsbb001f113o02k0 Sorghum methylation filtered lib...    36   3.1    2
(CR749172) Zebrafish DNA sequence from clone DKEY-246P9 in l...    42   3.8    1
(CR405682) Zebrafish DNA sequence from clone DKEYP-67E6 in l...    42   3.8    1
(CR352207) Zebrafish DNA sequence from clone CH211-110B5 in ...    42   3.8    1
(BX571850) Zebrafish DNA sequence from clone DKEY-259L18 in ...    42   3.8    1
(BX537162) Zebrafish DNA sequence from clone DKEY-9A20 in li...    42   3.8    1
(BX324148) Zebrafish DNA sequence from clone RP71-17G11 in l...    42   3.8    1
(BX001042) Zebrafish DNA sequence from clone CH211-146D6.          42   3.8    1
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         42   3.8    1
(BV259415) S235P6511FC6.T0 ItalianGreyhound Canis familiaris...    42   3.8    1
(AL928720) Mouse DNA sequence from clone RP23-83A3 on chromo...    42   3.8    1
(AF190472) Mus musculus NaG gene, partial cds.                     42   3.8    1
(AC154348) Mus musculus BAC clone RP24-531G19 from 16, compl...    42   3.8    1
(AC153638) Mus musculus 6 BAC RP23-416H6 (Roswell Park Cance...    42   3.8    1
(AC122011) Mus musculus chromosome 10 clone RP24-352E6, comp...    42   3.8    1
(AC115954) Mus musculus chromosome 16, clone RP24-62P21, com...    42   3.8    1
(AC113550) Mus musculus chromosome 6, clone RP23-275L12, com...    42   3.8    1
(AC092495) Mus musculus strain C57BL6/J chromosome 6 clone R...    42   3.8    1
(AC188585) Callithrix jacchus BAC clone CH259-45H12 from chr...    42   3.8    1
(CT963106) Medicago truncatula chromosome 5 clone mth2-64o22...    42   3.8    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    42   3.8    1
(AP003838) Oryza sativa Japonica Group genomic DNA, chromoso...    42   3.8    1
(AM479025) Vitis vinifera contig VV78X234211.17, whole genom...    42   3.8    1
(AM472803) Vitis vinifera contig VV78X079920.4, whole genome...    42   3.8    1
(AM462355) Vitis vinifera contig VV78X036668.3, whole genome...    42   3.8    1
(AM451835) Vitis vinifera contig VV78X033231.2, whole genome...    42   3.8    1
(AM438796) Vitis vinifera contig VV78X092729.5, whole genome...    42   3.8    1
(AM436794) Vitis vinifera contig VV78X218002.8, whole genome...    42   3.8    1
(AC189451) Brassica rapa subsp. pekinensis clone KBrB071P24,...    42   3.8    1
(EA708525) Sequence 87404 from patent US 7365185.                  42   3.8    1
(AX392736) Sequence 26 from Patent WO0212526.                      42   3.8    1
(AX391934) Sequence 4 from Patent EP1184454.                       42   3.8    1
(AR708150) Sequence 4 from patent US 6933422.                      42   3.8    1
(AR707083) Sequence 26 from patent US 6933145.                     42   3.8    1
(AB182371) Sus scrofa DNA, TCR-alpha/delta chain genes, clon...    42   3.8    1
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    42   3.8    1
(AP002987) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    42   3.8    1
(AC136632) Homo sapiens chromosome 5 clone RP11-889L3, compl...    42   3.8    1
(AC091821) Homo sapiens chromosome 5 clone CTC-325G23, compl...    42   3.8    1
(AC079902) Homo sapiens X BAC RP11-352L18 (Roswell Park Canc...    42   3.8    1
(AC160557) Mus musculus chromosome 5 clone RP23-10E7 map 5, ...    42   3.8    1
(AC158880) Bos taurus clone CH240-18B16, *** SEQUENCING IN P...    42   3.8    1
(AC140883) Homo sapiens chromosome 5 clone RP11-134I14, WORK...    42   3.8    1
(AC140871) Homo sapiens chromosome 5 clone RP11-114N2, WORKI...    42   3.8    1
(AC137352) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    42   3.8    1
(AC137278) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    42   3.8    1
(AC136627) Homo sapiens chromosome 5 clone RP11-779J14, WORK...    42   3.8    1
(AC136626) Homo sapiens chromosome 5 clone RP11-672B19, WORK...    42   3.8    1
(AC136609) Homo sapiens chromosome 5 clone RP11-1409D9, WORK...    42   3.8    1
(AC136592) Homo sapiens chromosome 5 clone RP11-1021G2, WORK...    42   3.8    1
(AC132632) Rattus norvegicus clone CH230-228B17, WORKING DRA...    42   3.8    1

>(BJ365473) Dictyostelium discoideum cDNA clone:ddc35b15, 5' end,
          single read.
          Length = 110

 Score = 61.9 bits (31), Expect = 4e-06
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 1  attgttttatttttaatatatatgtaatact 31
          |||||||||||||||||||||||||||||||
Sbjct: 1  attgttttatttttaatatatatgtaatact 31

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 90,855,651
Number of extensions: 9195677
Number of successful extensions: 3085072
Number of sequences better than 10.0: 168
Length of query: 119
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 97
Effective length of database: 93,199,600,587
Effective search space: 9040361256939
Effective search space used: 9040361256939
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

Query= Contig-U12992-1 (Contig-U12992-1Q) /CSM_Contig/Contig-U12992-1Q.Seq.d
         (119 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 42,812,083
Number of extensions: 1261850
Number of successful extensions: 27
Number of sequences better than 10.0: 0
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 0
Length of query: 39
Length of database: 1,051,180,864
Length adjustment: 13
Effective length of query: 26
Effective length of database: 1,009,105,597
Effective search space: 26236745522
Effective search space used: 26236745522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 24 (13.9 bits)

 psg: 0.36  gvh: 0.07  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 1.02  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for Contig-U12992-1 is nuc