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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12974-1
Contig ID Contig-U12974-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12974-1 (Contig-U12974-1Q) /CSM_Contig/Contig-U12974-1Q.Seq.d
CTGGTAAAAAAACGCCAAAAAGAACCAAACAGGATGAAAATGATAGTGAT
GATAGTGAAGTAGAGGATGAGAAATCATCAAAAGGTAAAAAGAAAAAAGG
AGGTAGTAAAAAACATCAAGAAGAATCAGATGATGAAAGTTTCTCAGAGG
TAGAGGAAGAGGATTTAGATAATTTGAAATTGGTTTTATTATCAGGTTTT
AATGATAGTGAACGTAGTTCAATTATAGAGTCGATGGGAGTAATTGGGTT
AACCGTTTCAGATGATCCTAAAGAATGTACTCATGTCATTATGAATGATT
CAAAGAATAGAACACTTAAATTCCTTTTGGGTGTTTCAAAAGGAGTTTGG
GTCTTAAAACGTTCTTGGTTAGAGGAATCCTTTAAACAACAACAAATCAT
TGACAACGAAGAAGATCACGAAGTTGATGAACATCCAGGTCCAAACATGG
CTCGTTTATCACAACAGAATGGTGATGAACCTTTATTCTCTGGTAAAACA
TTCTTTTTGGCCGGTAAAGCTGATCCAAGTGGTATTAATAGAAAATCAAA
AGAAGAATTAATTAGAAATTTAGGTGGTAAAATTTGTAAATCAATTGAAT
TGGCTTCAATTTGTATTGCTGAAGAATCAACTAAATCTTATGAAGTTAAA
AAAGTTACTGCTCCAATGGTTAAAACTGAACGGTTAGTGAATCAATTGCA
AATTANAATTAGCTCCAT
Gap no gap
Contig length 718
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4773017
End point 4772297
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 5
Link to clone list U12974
List of clone(s) 

est1=VHM638Z,1,677
est2=AHO888Z,9,616
est3=CHO325Z,25,719
est4=AFI815Z,65,587
est5=CHF651Z,89,616
Translated Amino Acid sequence 
GKKTPKRTKQDENDSDDSEVEDEKSSKGKKKKGGSKKHQEESDDESFSEVEEEDLDNLKL
VLLSGFNDSERSSIIESMGVIGLTVSDDPKECTHVIMNDSKNRTLKFLLGVSKGVWVLKR
SWLEESFKQQQIIDNEEDHEVDEHPGPNMARLSQQNGDEPLFSGKTFFLAGKADPSGINR
KSKEELIRNLGGKICKSIELASICIAEESTKSYEVKKVTAPMVKTERLVNQLQIXISS
Translated Amino Acid sequence (All Frames) 
Frame A:
lvkkrqkepnrmkmivmivk*rmrnhqkvkrkkevvknikknqmmkvsqr*rkri*ii*n
wfyyqvlmivnvvql*srwe*lg*pfqmilknvlmsl*miqriehlnsfwvfqkefgs*n
vlg*rnplnnnkslttkkitklmniqvqtwlvyhnrmvmnlyslvkhsfwpvkliqvvli
enqkkn*lei*vvkfvnqlnwlqfvllknqlnlmklkklllqwlklng**incklxlap


Frame B:
w*knakknqtg*k******srg*eiikr*kekrr**ktsrrir**kflrgrgrgfr*fei
gfiirf****t*fnyrvdgsnwvnrfr*s*rmyschye*fke*nt*ipfgcfkrslglkt
flvrgil*tttnh*qrrrsrs**tsrskhgsfittew**tfilw*nilfgr*s*skwy**
kikrrin*kfrw*nl*in*igfnlyc*rin*il*s*ksycsng*n*tvsesianxn*lh


Frame C:
GKKTPKRTKQDENDSDDSEVEDEKSSKGKKKKGGSKKHQEESDDESFSEVEEEDLDNLKL
VLLSGFNDSERSSIIESMGVIGLTVSDDPKECTHVIMNDSKNRTLKFLLGVSKGVWVLKR
SWLEESFKQQQIIDNEEDHEVDEHPGPNMARLSQQNGDEPLFSGKTFFLAGKADPSGINR
KSKEELIRNLGGKICKSIELASICIAEESTKSYEVKKVTAPMVKTERLVNQLQIXISS
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12974-1 (Contig-U12974-1Q)
/CSM_Contig/Contig-U12974-1Q.Seq.d
         (718 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12974-1 (Contig-U12974-1Q) /CSM_Contig/Conti...  1193  0.0
Contig-U08137-1 (Contig-U08137-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U05044-1 (Contig-U05044-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U01139-1 (Contig-U01139-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12332-1 (Contig-U12332-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11577-1 (Contig-U11577-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11524-1 (Contig-U11524-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11307-1 (Contig-U11307-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U12974-1 (Contig-U12974-1Q) /CSM_Contig/Contig-U12974-1Q.Seq.d
          Length = 718

 Score = 1193 bits (602), Expect = 0.0
 Identities = 605/605 (100%)
 Strand = Plus / Plus

                                                                       
Query: 114 catcaagaagaatcagatgatgaaagtttctcagaggtagaggaagaggatttagataat 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 catcaagaagaatcagatgatgaaagtttctcagaggtagaggaagaggatttagataat 173

                                                                       
Query: 174 ttgaaattggttttattatcaggttttaatgatagtgaacgtagttcaattatagagtcg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ttgaaattggttttattatcaggttttaatgatagtgaacgtagttcaattatagagtcg 233

                                                                       
Query: 234 atgggagtaattgggttaaccgtttcagatgatcctaaagaatgtactcatgtcattatg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atgggagtaattgggttaaccgtttcagatgatcctaaagaatgtactcatgtcattatg 293

                                                                       
Query: 294 aatgattcaaagaatagaacacttaaattccttttgggtgtttcaaaaggagtttgggtc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aatgattcaaagaatagaacacttaaattccttttgggtgtttcaaaaggagtttgggtc 353

                                                                       
Query: 354 ttaaaacgttcttggttagaggaatcctttaaacaacaacaaatcattgacaacgaagaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttaaaacgttcttggttagaggaatcctttaaacaacaacaaatcattgacaacgaagaa 413

                                                                       
Query: 414 gatcacgaagttgatgaacatccaggtccaaacatggctcgtttatcacaacagaatggt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gatcacgaagttgatgaacatccaggtccaaacatggctcgtttatcacaacagaatggt 473

                                                                       
Query: 474 gatgaacctttattctctggtaaaacattctttttggccggtaaagctgatccaagtggt 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gatgaacctttattctctggtaaaacattctttttggccggtaaagctgatccaagtggt 533

                                                                       
Query: 534 attaatagaaaatcaaaagaagaattaattagaaatttaggtggtaaaatttgtaaatca 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 attaatagaaaatcaaaagaagaattaattagaaatttaggtggtaaaatttgtaaatca 593

                                                                       
Query: 594 attgaattggcttcaatttgtattgctgaagaatcaactaaatcttatgaagttaaaaaa 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 attgaattggcttcaatttgtattgctgaagaatcaactaaatcttatgaagttaaaaaa 653

                                                                       
Query: 654 gttactgctccaatggttaaaactgaacggttagtgaatcaattgcaaattanaattagc 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gttactgctccaatggttaaaactgaacggttagtgaatcaattgcaaattanaattagc 713

                
Query: 714 tccat 718
           |||||
Sbjct: 714 tccat 718


 Score =  133 bits (67), Expect = 3e-31
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 cgccaaaaagaaccaaacaggatgaaaatgatagtgatgatagtgaagtagaggatgaga 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 cgccaaaaagaaccaaacaggatgaaaatgatagtgatgatagtgaagtagaggatgaga 72

                 
Query: 73 aatcatc 79
          |||||||
Sbjct: 73 aatcatc 79


>Contig-U08137-1 (Contig-U08137-1Q) /CSM_Contig/Contig-U08137-1Q.Seq.d
          Length = 1554

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   aatgatagtgatgatagtga 58
            ||||||||||||||||||||
Sbjct: 1019 aatgatagtgatgatagtga 1038


>Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Contig-U13795-1Q.Seq.d
          Length = 641

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 118 aagaagaatcagatgatga 136
           |||||||||||||||||||
Sbjct: 338 aagaagaatcagatgatga 356


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,665
Number of Sequences: 6905
Number of extensions: 14665
Number of successful extensions: 1229
Number of sequences better than 10.0: 131
length of query: 718
length of database: 5,674,871
effective HSP length: 16
effective length of query: 702
effective length of database: 5,564,391
effective search space: 3906202482
effective search space used: 3906202482
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 4
Homology vs DNA 
Query= Contig-U12974-1 (Contig-U12974-1Q) /CSM_Contig/Contig-U12974-1Q.Seq.d
         (718 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ384652) Dictyostelium discoideum cDNA clone:ddc50b07, 3' ...  1185   0.0    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...  1132   0.0    3
(BJ444440) Dictyostelium discoideum cDNA clone:ddv56k10, 3' ...  1112   0.0    2
(BJ356641) Dictyostelium discoideum cDNA clone:dda60p22, 3' ...   997   0.0    2
(BJ379020) Dictyostelium discoideum cDNA clone:ddc33e14, 3' ...   989   0.0    1
(BJ344340) Dictyostelium discoideum cDNA clone:dda18n04, 3' ...   940   0.0    2
(AC133510) Mus musculus BAC clone RP23-409B11 from 8, comple...    42   0.42   4
(AM489206) Vitis vinifera contig VV78X048948.10, whole genom...    48   0.46   1
(EE078694) S2B21064 Buds (VvS2) Vitis vinifera cDNA clone S2...    48   0.46   1
(EE078662) S2B21005 Buds (VvS2) Vitis vinifera cDNA clone S2...    48   0.46   1
(EC994814) WIN1151.C21_H03 Muscat Hamburg pre-veraison berry...    48   0.46   1
(EC925012) WIN027.TB24.1_H07 Cab Sauv flower, leaf and root ...    48   0.46   1
(DT022677) VVI081A03_595194 CabSau Flower Stage 12 (FLOu0012...    48   0.46   1
(DT020086) VVI040G12_590012 CabSau Flower Stage 12 (FLOu0012...    48   0.46   1
(CF607224) GEMMA01_000693 Grape Bud pSPORT1 Library Vitis vi...    48   0.46   1
(CF403737) CSECS012G02_PREu0032 CabSau Berry Preveraison Sta...    48   0.46   1
(EJ641752) 1093011953705 Global-Ocean-Sampling_GS-29-01-01-1...    40   1.3    2
(AC177288) Strongylocentrotus purpuratus clone R3-1033F10, W...    46   1.8    1
(AC176053) Strongylocentrotus purpuratus clone R3-18P10, WOR...    46   1.8    1
(ET289125) S0020K10_SP6 CHORI-214 Salmo salar genomic clone ...    46   1.8    1
(EK523168) 1095515632880 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.8    1
(EK269918) 1095462252977 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(BH999912) oei75h07.b1 B.oleracea002 Brassica oleracea genom...    46   1.8    1
(EB280701) CNSN01-F-035405-501 Normalized CNS library (juven...    46   1.8    1
(Z84485) Human DNA sequence from clone RP3-524E15 on chromos...    38   2.3    3
(AC118766) Rattus norvegicus clone CH230-158F16, *** SEQUENC...    44   3.9    3
(AC139354) Medicago truncatula clone mth1-64n13, complete se...    44   3.9    4
(CA523134) KS12018G01 KS12 Capsicum annuum cDNA, mRNA sequence.    40   4.4    2
(AC130890) Homo sapiens X BAC RP11-450G14 (Roswell Park Canc...    40   4.9    4
(ER300842) 1092343681264 Global-Ocean-Sampling_GS-34-01-01-1...    40   5.0    2
(AC021069) Homo sapiens chromosome 3 clone RP11-392P21, WORK...    42   6.9    3
(CU138553) Zebrafish DNA sequence from clone DKEY-284I7 in l...    44   7.1    1
(BX601644) Zebrafish DNA sequence from clone DKEY-21O13 in l...    44   7.1    1
(BX276099) Zebrafish DNA sequence from clone CH211-204C21 in...    44   7.1    1
(AC161210) Mus musculus chromosome 3, clone RP23-71N6, compl...    44   7.1    1
(AC122456) Mus musculus BAC clone RP24-265M23 from chromosom...    44   7.1    1
(AC092266) Homo sapiens chromosome 5 clone RP11-24P24, compl...    44   7.1    1
(AC026709) Homo sapiens chromosome 5 clone CTD-2084I18, comp...    44   7.1    1
(AC022078) Homo sapiens 12p BAC RP11-498P8 (Roswell Park Can...    44   7.1    1
(AC162158) Rhinolophus ferrumequinum clone VMRC7-52J21, WORK...    44   7.1    1
(AC160918) Rhinolophus ferrumequinum clone VMRC7-6M19, WORKI...    44   7.1    1
(AC157887) Rhinolophus ferrumequinum clone VMRC7-38O15, WORK...    44   7.1    1
(CU855765) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.1    1
(CU179652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(AC204704) Zea mays chromosome unknown clone CH201-476O13; Z...    44   7.1    1
(AC198582) Spermophilus tridecemlineatus clone VMRC20-645D19...    44   7.1    1
(AC170605) Mus musculus chromosome 16 clone RP23-104C2, WORK...    44   7.1    1
(AC170205) Macaca mulatta clone CH250-283P20, WORKING DRAFT ...    44   7.1    1
(AC023388) Homo sapiens chromosome 5 clone RP11-35B18 map 5,...    44   7.1    1
(AC012579) Homo sapiens clone RP11-8I20, WORKING DRAFT SEQUE...    44   7.1    1
(EK385095) 1095469479893 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.1    1
(AM634919) Entamoeba dispar GSS, clone dispar130b11.p1k.           44   7.1    1
(DX900437) KBrH032L12F KBrH, Brassica rapa HindIII BAC libra...    44   7.1    1
(CR229514) Reverse strand read from insert in 5'HPRT inserti...    44   7.1    1
(CL075498) CH216-136O12_RM1.1 CH216 Xenopus (Silurana) tropi...    44   7.1    1
(AG287556) Mus musculus molossinus DNA, clone:MSMg01-061F02....    44   7.1    1
(EH168037) LR_CC_07A06_M13R LR_CC Lumbricus rubellus cDNA cl...    44   7.1    1
(EC822042) SME00003145 esmbsro2 Sawyeria marylandensis cDNA,...    44   7.1    1
(EC821827) SME00006838 esmbsro2 Sawyeria marylandensis cDNA,...    44   7.1    1
(DR697196) Lr_AT1CF_38E04_SKplus Earthworm Atrazine Exposure...    44   7.1    1
(DR009256) Lr_Cu2CF_32B07 Earthworm Copper Exposure Library ...    44   7.1    1
(DR008956) Lr_Cu2CF_11A10 Earthworm Copper Exposure Library ...    44   7.1    1
(DK332924) Drosophila sechellia mRNA, adult full-length cDNA...    44   7.1    1
(DK323005) Drosophila sechellia mRNA, adult full-length cDNA...    44   7.1    1
(CF416548) Lr_LC1ED_13B05_SAC Lumbricus rubellus Late Cocoon...    44   7.1    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    44   7.1    1
(AC128086) Rattus norvegicus clone CH230-319A11, WORKING DRA...    38   7.4    3
(AC108987) Rattus norvegicus clone CH230-115K1, *** SEQUENCI...    38   9.4    6
(CP000828) Acaryochloris marina MBIC11017, complete genome.        32   9.5    2

>(BJ384652) Dictyostelium discoideum cDNA clone:ddc50b07, 3' end,
           single read.
          Length = 695

 Score = 1185 bits (598), Expect(2) = 0.0
 Identities = 604/605 (99%)
 Strand = Plus / Minus


Query: 114 catcaagaagaatcagatgatgaaagtttctcagaggtagaggaagaggatttagataat 173
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 catcaagaagaaccagatgatgaaagtttctcagaggtagaggaagaggatttagataat 547


Query: 174 ttgaaattggttttattatcaggttttaatgatagtgaacgtagttcaattatagagtcg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgaaattggttttattatcaggttttaatgatagtgaacgtagttcaattatagagtcg 487


Query: 234 atgggagtaattgggttaaccgtttcagatgatcctaaagaatgtactcatgtcattatg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atgggagtaattgggttaaccgtttcagatgatcctaaagaatgtactcatgtcattatg 427


Query: 294 aatgattcaaagaatagaacacttaaattccttttgggtgtttcaaaaggagtttgggtc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatgattcaaagaatagaacacttaaattccttttgggtgtttcaaaaggagtttgggtc 367


Query: 354 ttaaaacgttcttggttagaggaatcctttaaacaacaacaaatcattgacaacgaagaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttaaaacgttcttggttagaggaatcctttaaacaacaacaaatcattgacaacgaagaa 307


Query: 414 gatcacgaagttgatgaacatccaggtccaaacatggctcgtttatcacaacagaatggt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gatcacgaagttgatgaacatccaggtccaaacatggctcgtttatcacaacagaatggt 247


Query: 474 gatgaacctttattctctggtaaaacattctttttggccggtaaagctgatccaagtggt 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gatgaacctttattctctggtaaaacattctttttggccggtaaagctgatccaagtggt 187


Query: 534 attaatagaaaatcaaaagaagaattaattagaaatttaggtggtaaaatttgtaaatca 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attaatagaaaatcaaaagaagaattaattagaaatttaggtggtaaaatttgtaaatca 127


Query: 594 attgaattggcttcaatttgtattgctgaagaatcaactaaatcttatgaagttaaaaaa 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 attgaattggcttcaatttgtattgctgaagaatcaactaaatcttatgaagttaaaaaa 67


Query: 654 gttactgctccaatggttaaaactgaacggttagtgaatcaattgcaaattanaattagc 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gttactgctccaatggttaaaactgaacggttagtgaatcaattgcaaattanaattagc 7


Query: 714 tccat 718
           |||||
Sbjct: 6   tccat 2

 Score =  109 bits (55), Expect(2) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Minus


Query: 25  ccaaacaggatgaaaatgatagtgatgatagtgaagtagaggatgagaaatcatc 79
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ccaaacaggatgaaaatgatagtgatgatagtgaagtagaggatgagaaatcatc 641

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 809,416,605
Number of extensions: 50272079
Number of successful extensions: 3961777
Number of sequences better than 10.0: 71
Length of query: 718
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 694
Effective length of database: 97,308,875,965
Effective search space: 67532359919710
Effective search space used: 67532359919710
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U12974-1 (Contig-U12974-1Q) /CSM_Contig/Contig-U12974-1Q.Seq.d
         (718 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115116_1(BC115116|pid:none) Danio rerio zgc:136403, mRNA (cDNA...    68   3e-10
DQ788861_1(DQ788861|pid:none) Gallus gallus microcephalin (MCPH1...    62   1e-08
(Q90WJ3) RecName: Full=PAX-interacting protein 1; AltName: Full=...    61   3e-08
BC077588_1(BC077588|pid:none) Xenopus laevis Swift, mRNA (cDNA c...    61   4e-08
EU957485_1(EU957485|pid:none) Zea mays clone 1594336 ATBRCA1 mRN...    60   7e-08
AK103203_1(AK103203|pid:none) Oryza sativa Japonica Group cDNA c...    59   1e-07
AF104261_1(AF104261|pid:none) Mus musculus Pax transcription act...    58   3e-07
(Q6ZW49) RecName: Full=PAX-interacting protein 1; AltName: Full=...    56   1e-06
BX538201_1(BX538201|pid:none) Homo sapiens mRNA; cDNA DKFZp686O1...    56   1e-06
BC033781_1(BC033781|pid:none) Homo sapiens PAX interacting (with...    56   1e-06
AF038042_1(AF038042|pid:none) Homo sapiens BRCA1-associated RING...    56   1e-06
BX640616_1(BX640616|pid:none) Homo sapiens mRNA; cDNA DKFZp686E0...    56   1e-06
AK314260_1(AK314260|pid:none) Homo sapiens cDNA, FLJ95007, highl...    56   1e-06
AK223409_1(AK223409|pid:none) Homo sapiens mRNA for BRCA1 associ...    56   1e-06
AX781547_1(AX781547|pid:none) Sequence 1 from Patent EP1321474. ...    56   1e-06
BT061929_1(BT061929|pid:none) Zea mays full-length cDNA clone ZM...    56   1e-06
(Q8RXD4) RecName: Full=Protein BREAST CANCER SUSCEPTIBILITY 1 ho...    55   2e-06
AL021960_1(AL021960|pid:none) Arabidopsis thaliana DNA chromosom...    55   2e-06
A85240(A85240) hypothetical protein AT4g21070 [imported] - Arabi...    55   2e-06
(Q95153) RecName: Full=Breast cancer type 1 susceptibility prote...    54   4e-06
(Q9QZH2) RecName: Full=BRCA1-associated RING domain protein 1;  ...    54   4e-06
EU817406_1(EU817406|pid:none) Arabidopsis thaliana BARD1 (AT1G04...    54   6e-06
(O70445) RecName: Full=BRCA1-associated RING domain protein 1;  ...    52   1e-05
AY428536_1(AY428536|pid:none) Tetraodon nigroviridis breast canc...    52   1e-05
AF005068_1(AF005068|pid:none) Homo sapiens breast and ovarian ca...    52   2e-05
U68041_1(U68041|pid:none) Human breast and ovarian cancer suscep...    52   2e-05
DQ190453_3(DQ190453|pid:none) Homo sapiens clone mck55_A neighbo...    52   2e-05
AY888184_1(AY888184|pid:none) Synthetic construct Homo sapiens c...    52   2e-05
U64805_1(U64805|pid:none) Homo sapiens Brca1-delta11b (Brca1) mR...    52   2e-05
AF207822_1(AF207822|pid:none) Pan troglodytes BRCA1 (BRCA1) mRNA...    52   2e-05
AK293762_1(AK293762|pid:none) Homo sapiens cDNA FLJ58524 complet...    52   2e-05
AY751490_1(AY751490|pid:none) Homo sapiens breast and ovarian ca...    52   2e-05
AY890755_1(AY890755|pid:none) Synthetic construct Homo sapiens c...    52   2e-05
AB271921_1(AB271921|pid:none) Sus scrofa BRCA1 mRNA for breast c...    51   3e-05
(Q6J6I8) RecName: Full=Breast cancer type 1 susceptibility prote...    51   4e-05
AF479648_1(AF479648|pid:none) Bos taurus breast and ovarian canc...    50   5e-05
(Q6J6I9) RecName: Full=Breast cancer type 1 susceptibility prote...    50   7e-05
AF355273_1(AF355273|pid:none) Gallus gallus breast and ovarian c...    50   7e-05
AK301843_1(AK301843|pid:none) Homo sapiens cDNA FLJ51596 complet...    50   7e-05
(P48754) RecName: Full=Breast cancer type 1 susceptibility prote...    49   2e-04
U32446_1(U32446|pid:none) Mus musculus putative breast/ovarian c...    47   4e-04
U36475_1(U36475|pid:none) Mus musculus breast and ovarian cancer...    47   4e-04
U68174_1(U68174|pid:none) Mus musculus breast/ovarian cancer sus...    47   4e-04
BC159159_1(BC159159|pid:none) Xenopus tropicalis breast cancer 1...    47   4e-04
BC068303_1(BC068303|pid:none) Mus musculus breast cancer 1, mRNA...    47   4e-04
CP001323_526(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    47   6e-04
BC170051_1(BC170051|pid:none) Xenopus laevis BRCA1-associated RI...    47   8e-04
AC117176_48(AC117176|pid:none) Dictyostelium discoideum chromoso...    47   8e-04
(Q5IFK1) RecName: Full=Microcephalin;  &AY742816_1(AY742816|pid:...    46   0.001
AY994160_1(AY994160|pid:none) Monodelphis domestica BRCA1-like p...    45   0.002
BC170141_1(BC170141|pid:none) Xenopus laevis breast and ovarian ...    45   0.002
AJ720093_1(AJ720093|pid:none) Gallus gallus mRNA for hypothetica...    45   0.002
AF416868_1(AF416868|pid:none) Xenopus laevis breast and ovarian ...    45   0.002
(Q7TT79) RecName: Full=Microcephalin;  &AY070216_1(AY070216|pid:...    45   0.003
(P61594) RecName: Full=Microcephalin;  &AY553023_1(AY553023|pid:...    44   0.004
(P61591) RecName: Full=Microcephalin;  &AY553009_1(AY553009|pid:...    44   0.005
AK022909_1(AK022909|pid:none) Homo sapiens cDNA FLJ12847 fis, cl...    44   0.005
(P61593) RecName: Full=Microcephalin;  &AY552995_1(AY552995|pid:...    44   0.005
AC130604_3(AC130604|pid:none) Oryza sativa (japonica cultivar-gr...    44   0.006
BC067694_1(BC067694|pid:none) Danio rerio topoisomerase (DNA) II...    43   0.008
CP000587_330(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...    43   0.011
CR753890_2(CR753890|pid:none) Zebrafish DNA sequence from clone ...    41   0.032
(Q10337) RecName: Full=BRCT-containing protein 1;  &AL096788_5(A...    41   0.032
CR753890_3(CR753890|pid:none) Zebrafish DNA sequence from clone ...    41   0.032
AY570945_1(AY570945|pid:none) Lemur catta microcephalin mRNA, pa...    41   0.042
BC170556_1(BC170556|pid:none) Xenopus laevis Cut5-related protei...    41   0.042
CR954207_237(CR954207|pid:none) Ostreococcus tauri strain OTTH05...    41   0.042
AY253323_1(AY253323|pid:none) Xenopus laevis Xmus101 (Xmus101) m...    41   0.042
AY570944_1(AY570944|pid:none) Canis familiaris microcephalin mRN...    40   0.055
BC142504_1(BC142504|pid:none) Bos taurus microcephalin 1, mRNA (...    39   0.12
BC154381_1(BC154381|pid:none) Bos taurus microcephalin 1, mRNA (...    39   0.12
AB019397_1(AB019397|pid:none) Homo sapiens mRNA for DNA topoisom...    39   0.16
(Q92547) RecName: Full=DNA topoisomerase 2-binding protein 1; Al...    39   0.16
BC126209_1(BC126209|pid:none) Homo sapiens topoisomerase (DNA) I...    39   0.16
BC085615_1(BC085615|pid:none) Homo sapiens breast cancer 1, earl...    39   0.21
BC154921_1(BC154921|pid:none) Xenopus tropicalis hypothetical pr...    38   0.27
T24887(T24887) hypothetical protein T13F2.3b - Caenorhabditis el...    38   0.27
T24877(T24877) hypothetical protein T13F2.3a - Caenorhabditis el...    38   0.27
(Q9DE07) RecName: Full=Nibrin; AltName: Full=Nijmegen breakage s...    38   0.27
(Q8R3P9) RecName: Full=Ankyrin repeat domain-containing protein ...    37   0.46
BC100362_1(BC100362|pid:none) Mus musculus BRCT domain containin...    37   0.46
(A3DE88) RecName: Full=DNA ligase;          EC=6.5.1.2; AltName:...    37   0.46
BC085955_1(BC085955|pid:none) Rattus norvegicus mediator of DNA ...    37   0.61
CT005265_268(CT005265|pid:none) Leishmania major strain Friedlin...    37   0.79
AM502244_266(AM502244|pid:none) Leishmania infantum chromosome 26.     37   0.79
AY570943_1(AY570943|pid:none) Felis catus microcephalin mRNA, co...    37   0.79
AF108206_1(AF108206|pid:none) Drosophila melanogaster mutator 2 ...    36   1.0
AK129074_1(AK129074|pid:none) Mus musculus mRNA for mKIAA0170 pr...    36   1.0
AE014296_413(AE014296|pid:none) Drosophila melanogaster chromoso...    36   1.0
BC085140_1(BC085140|pid:none) Mus musculus mediator of DNA damag...    36   1.0
AY506186_1(AY506186|pid:none) Hylobates leucogenys clone WCG mic...    36   1.0
(Q5PSV9) RecName: Full=Mediator of DNA damage checkpoint protein...    36   1.0
AY506129_1(AY506129|pid:none) Homo sapiens clone AB11 microcepha...    36   1.0
AE014296_414(AE014296|pid:none) Drosophila melanogaster chromoso...    36   1.0
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet...    36   1.3
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA...    36   1.3
AX058340_1(AX058340|pid:none) Sequence 24 from Patent WO0077179....    36   1.3
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF...    36   1.3
M18112_1(M18112|pid:none) Human poly(ADP-ribose) polymerase mRNA...    36   1.3
DQ891636_1(DQ891636|pid:none) Synthetic construct clone IMAGE:10...    36   1.3
AX062318_1(AX062318|pid:none) Sequence 177 from Patent WO0100849.      36   1.3
AM494963_259(AM494963|pid:none) Leishmania braziliensis chromoso...    36   1.3
FM992694_212(FM992694|pid:none) Candida dubliniensis CD36 chromo...    35   1.8
AF092840_1(AF092840|pid:none) Mus musculus nibrin mRNA, complete...    35   1.8
BC044773_1(BC044773|pid:none) Mus musculus nibrin, mRNA (cDNA cl...    35   1.8
AK134960_1(AK134960|pid:none) Mus musculus adult male olfactory ...    35   1.8
AK297452_1(AK297452|pid:none) Homo sapiens cDNA FLJ57532 complet...    35   2.3
BC054885_1(BC054885|pid:none) Homo sapiens ankyrin repeat domain...    35   2.3
FN392320_687(FN392320|pid:none) Pichia pastoris GS115 chromosome...    35   2.3
AB210171_1(AB210171|pid:none) Pan troglodytes MDC1 gene for medi...    35   2.3
BC070332_1(BC070332|pid:none) Homo sapiens ankyrin repeat domain...    35   2.3
BC107571_1(BC107571|pid:none) Homo sapiens ankyrin repeat domain...    35   2.3
(Q7YR40) RecName: Full=Mediator of DNA damage checkpoint protein...    35   2.3
CR954212_276(CR954212|pid:none) Ostreococcus tauri strain OTTH05...    35   2.3
(Q9BQI6) RecName: Full=Ankyrin repeat domain-containing protein ...    35   2.3
AK042026_1(AK042026|pid:none) Mus musculus 3 days neonate thymus...    35   2.3
AP008209_1234(AP008209|pid:none) Oryza sativa (japonica cultivar...    35   2.3
FN392322_941(FN392322|pid:none) Pichia pastoris GS115 chromosome...    35   3.0
AB088099_1(AB088099|pid:none) Homo sapiens KIAA0170 gene for hom...    34   3.9
(Q2TAZ4) RecName: Full=Mediator of DNA damage checkpoint protein...    34   3.9
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl...    34   3.9
AK302434_1(AK302434|pid:none) Homo sapiens cDNA FLJ51571 complet...    34   3.9
BC131491_1(BC131491|pid:none) Homo sapiens mediator of DNA damag...    34   3.9
BX248307_1(BX248307|pid:none) Human DNA sequence from clone DASS...    34   3.9
BC152556_1(BC152556|pid:none) Homo sapiens mediator of DNA damag...    34   3.9
BA000025_70(BA000025|pid:none) Homo sapiens genomic DNA, chromos...    34   3.9
D79992_1(D79992|pid:none) Homo sapiens KIAA0170 mRNA, partial cds.     34   3.9
CR759807_4(CR759807|pid:none) Zebrafish DNA sequence from clone ...    34   3.9
AF324348_1(AF324348|pid:none) Arabidopsis thaliana putative DNA ...    34   5.1
CP000471_986(CP000471|pid:none) Magnetococcus sp. MC-1, complete...    34   5.1
AF439823_1(AF439823|pid:none) Arabidopsis thaliana AT3g52180/F4F...    34   5.1
BC110927_1(BC110927|pid:none) Xenopus laevis hypothetical LOC495...    33   6.7
AY487422_1(AY487422|pid:none) Xenopus laevis epithelial cell tra...    33   6.7
BC007170_1(BC007170|pid:none) Mus musculus topoisomerase (DNA) I...    33   6.7
AY065195_1(AY065195|pid:none) Arabidopsis thaliana GTP-binding p...    33   6.7
BC084926_1(BC084926|pid:none) Xenopus laevis hypothetical LOC495...    33   6.7
BC026608_1(BC026608|pid:none) Mus musculus topoisomerase (DNA) I...    33   6.7
BC062111_1(BC062111|pid:none) Mus musculus topoisomerase (DNA) I...    33   6.7
AE013599_1417(AE013599|pid:none) Drosophila melanogaster chromos...    33   6.7
T08704(T08704)hypothetical protein DKFZp564C0469.1 - human (frag...    33   6.7
EF587234_1(EF587234|pid:none) Drosophila melanogaster MCPH1 isof...    33   6.7
AM425725_1(AM425725|pid:none) Vitis vinifera contig VV78X207905....    33   8.7
AC152921_6(AC152921|pid:none) Medicago truncatula clone mth2-102...    33   8.7
AC135595_1(AC135595|pid:none) Oryza sativa chromosome 3 BAC OSJN...    33   8.7
(A6QR20) RecName: Full=Ankyrin repeat domain-containing protein ...    33   8.7
BT042173_1(BT042173|pid:none) Zea mays full-length cDNA clone ZM...    33   8.7

>BC115116_1(BC115116|pid:none) Danio rerio zgc:136403, mRNA (cDNA
           clone MGC:136403 IMAGE:7414553), complete cds.
          Length = 422

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
 Frame = +3

Query: 222 IIESMGVIGLTVSDDPKECTHVIMNDSKNRTLKFLLGVSKGVWVLKRSWLEESFKQQQII 401
           +I ++G  G TV DD  E T  +++ S  RT+  LLG+++G W+L   W+    + QQ +
Sbjct: 254 VIRNLG--GFTVVDDVCESTSHVVSGSPRRTVNILLGIARGCWILSFEWIMWCLEHQQWV 311

Query: 402 DNEEDHEVDEH-PGPNMARLSQQ----NGDEPLFSGK-TFFLAGKADPSGINRKSKEELI 563
            +EE  E+ EH P   + RL Q        + LF  +   F++  + P     K   ELI
Sbjct: 312 -SEEPFELSEHFPAAPICRLQQHLSAGEYQQDLFHNQLPMFVSPYSQPPCGRLK---ELI 367

Query: 564 RNLGGKICKSIELASICIAEESTKSYE 644
           +  GG +C+S+  A ICI   + K  E
Sbjct: 368 KLCGGTVCRSVRQAGICIGGYNGKKPE 394

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 871,210,496
Number of extensions: 15356192
Number of successful extensions: 34607
Number of sequences better than 10.0: 146
Number of HSP's gapped: 34571
Number of HSP's successfully gapped: 146
Length of query: 239
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 114
Effective length of database: 646,610,989
Effective search space: 73713652746
Effective search space used: 73713652746
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.26  gvh: -0.01  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U12974-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0