| Contig-U12962-1 |
| Contig ID |
Contig-U12962-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
543 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
2331845 |
| End point |
2332378 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U12962 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 4 |
| Homology vs DNA |
Query= Contig-U12962-1 (Contig-U12962-1Q) /CSM_Contig/Contig-U12962-1Q.Seq.d
(543 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ364581) Dictyostelium discoideum cDNA clone:ddc32a07, 5' ... 856 0.0 1
(EA385309) Sequence 34133 from patent US 7314974. 50 0.083 1
(CP001034) Natranaerobius thermophilus JW/NM-WN-LF, complete... 50 0.083 1
(CP000383) Cytophaga hutchinsonii ATCC 33406, complete genome. 50 0.083 1
(CT571262) Medicago truncatula chromosome 5 clone mth2-35p15... 48 0.33 1
(AC146712) Medicago truncatula clone mth2-117f19, WORKING DR... 48 0.33 1
(AC140772) Medicago truncatula clone mth2-7g19, WORKING DRAF... 48 0.33 1
(CU469565) Medicago truncatula chromosome 5 clone mte1-9k20,... 48 0.33 1
(CR345976) mte1-8M21FM1 BAC end, cultivar Jemalong A17 of Me... 48 0.33 1
(CG943607) MBEGE81TR mth2 Medicago truncatula genomic clone ... 48 0.33 1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.69 9
(AL670708) Mouse DNA sequence from clone RP23-125A21 on chro... 32 0.69 2
(CR974478) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 38 0.96 6
(BT027788) Gasterosteus aculeatus clone CNB21-E05 mRNA seque... 46 1.3 1
(AM464968) Vitis vinifera contig VV78X161000.7, whole genome... 46 1.3 1
(AC151423) Medicago truncatula chromosome 7 clone mth2-13k5,... 46 1.3 1
(AC126713) Rattus norvegicus clone CH230-5L14, WORKING DRAFT... 46 1.3 1
(AC103207) Rattus norvegicus clone CH230-33J14, WORKING DRAF... 46 1.3 1
(AZ532555) ENTBO83TF Entamoeba histolytica Sheared DNA Entam... 46 1.3 1
(DU946425) 375592 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.3 1
(CW988484) KBrH015I08R KBrH, Brassica rapa HindIII BAC libra... 46 1.3 1
(DY977083) CLSS10841.b1_A23.ab1 CLS(LMS) lettuce sativa Lact... 46 1.3 1
(DY228356) ID0AAK3YN23CM1 ApHL3SD Acyrthosiphon pisum cDNA c... 46 1.3 1
(DW111110) CLRX7999.b1_N08.ab1 CLR(XYZ) lettuce serriola Lac... 46 1.3 1
(DW105159) CLRX2975.b1_M24.ab1 CLR(XYZ) lettuce serriola Lac... 46 1.3 1
(DV742428) ID0AFF7AD02CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 46 1.3 1
(DV742130) ID0AFF6BA05CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 46 1.3 1
(CN582188) USDA-FP_125250 Acyrthosiphon pisum, Pea Aphid Acy... 46 1.3 1
(BU002895) QGG33H01.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 46 1.3 1
(BQ996529) QGG13B11.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 46 1.3 1
(FF317450) 280389990 Pea aphid whole body normalized full le... 46 1.3 1
(FF297865) 279317946 Pea aphid whole body normalized full le... 46 1.3 1
(EX645521) 256672404 Pea aphid whole body normalized full le... 46 1.3 1
(AC142356) Rattus norvegicus clone CH230-494N12, WORKING DRA... 38 1.6 4
(ER519736) 1093015555873 Global-Ocean-Sampling_GS-35-01-01-1... 38 2.3 2
(EB806160) 3483_D04 Botrytis cinerea expressed sequence tags... 40 2.3 2
(CR388095) Zebrafish DNA sequence from clone CH211-199M9 in ... 32 2.5 2
(AC180772) Strongylocentrotus purpuratus clone R3-3073N24, W... 34 2.6 2
(CU179749) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 2.6 2
(CU633359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.7 4
(AC158388) Mus musculus BAC clone RP24-545I9 from chromosome... 38 2.9 5
(CU855517) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.2 5
(FH322921) CHO_OF4261xc18f2.ab1 CHO_OF4 Nicotiana tabacum ge... 34 3.5 2
(FH317366) CHO_OF4260xc18f2.ab1 CHO_OF4 Nicotiana tabacum ge... 34 3.5 2
(AL139410) Human DNA sequence from clone RP11-21N7 on chromo... 40 3.5 4
(AC178482) Strongylocentrotus purpuratus clone R3-3033I17, W... 34 3.9 6
(AL591586) Mouse DNA sequence from clone RP23-126L18 on chro... 38 4.6 4
(BV147251) PZA02687-79940-NC7A Zea mays NC7A Zea mays STS ge... 44 5.1 1
(BV147247) PZA02687-79926-GT119 Zea mays GT119 Zea mays STS ... 44 5.1 1
(BV147246) PZA02687-79927-CO159 Zea mays CO159 Zea mays STS ... 44 5.1 1
(AL928715) Mouse DNA sequence from clone RP23-373D16 on chro... 44 5.1 1
(AC168072) Mus musculus BAC clone CH25-291I13 from chromosom... 44 5.1 1
(AC154339) Mus musculus BAC clone RP23-248O15 from chromosom... 44 5.1 1
(EF545376) Ascidiota blepharophylla subsp. alaskana voucher ... 44 5.1 1
(EF545375) Ascidiota blepharophylla subsp. alaskana voucher ... 44 5.1 1
(CT010515) M.truncatula DNA sequence from clone MTH2-146B21 ... 44 5.1 1
(AM448101) Vitis vinifera contig VV78X171513.6, whole genome... 44 5.1 1
(AC189621) Brassica rapa subsp. pekinensis clone KBrH121P05,... 44 5.1 1
(AY918878) Cyphophthalmus sp. 1 Bulgaria cytochrome oxidase ... 44 5.1 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 5.1 1
(Z83848) Human DNA sequence from clone RP1-57A13 on chromoso... 44 5.1 1
(AC157356) Bos taurus clone CH240-53J21, WORKING DRAFT SEQUE... 44 5.1 1
(AC137508) Medicago truncatula clone mth2-17m13, WORKING DRA... 44 5.1 1
(CU862076) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 1
(CU607023) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 1
(CU466474) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 1
(AC171023) Bos taurus clone CH240-257J7, WORKING DRAFT SEQUE... 44 5.1 1
(AC162959) Bos taurus clone CH240-126H17, WORKING DRAFT SEQU... 44 5.1 1
(AZ291295) RPCI-23-145E12.TV RPCI-23 Mus musculus genomic cl... 44 5.1 1
(AZ034563) RPCI-23-248O15.TJ RPCI-23 Mus musculus genomic cl... 44 5.1 1
(FI125716) MUGQ_CH252P502K12T7_CH0217_038 CHORI-252 Vervet M... 44 5.1 1
(ER969828) AF__Bc0035I18f AF__Bc Aquilegia formosa genomic, ... 44 5.1 1
(ER351311) 1092347001522 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.1 1
(EK180292) 1095458118246 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.1 1
(AM656608) Entamoeba moshkovskii FIC GSS, clone mosh043c06.p1k. 44 5.1 1
(EJ215570) 1092351091034 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.1 1
(ED668354) GM_WBa0098D22.r GM_WBa Glycine max genomic clone ... 44 5.1 1
(ED188758) AUAC-aag50d11.g1 Ascaris suum whole genome shotgu... 44 5.1 1
(CG985050) CH240_154B08.TV CHORI-240 Bos taurus genomic clon... 44 5.1 1
(CE315971) tigr-gss-dog-17000361069615 Dog Library Canis lup... 44 5.1 1
(CE198580) tigr-gss-dog-17000372204484 Dog Library Canis lup... 44 5.1 1
(AG320380) Mus musculus molossinus DNA, clone:MSMg01-106D19.... 44 5.1 1
(EG349201) SAAH-aad03c12.b1 Agen 0058 Schmidtea mediterranea... 44 5.1 1
(EE272211) PMAO-aac91h02.g1 Lamprey_EST_Embryo Petromyzon ma... 44 5.1 1
(DV603508) EST1206504 Glossina morsitans morsitans Fat body ... 44 5.1 1
(AU266528) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.1 1
(CT863616) Oryza sativa Indica Group EST sequence:OSIGCSN025... 44 5.1 1
(CK769727) 957814 MARC 1BOV Bos taurus cDNA 3', mRNA sequence. 44 5.1 1
(CA827577) 1114016F01.y3 1114 - Unigene IV from Maize Genome... 44 5.1 1
(CA827568) 1114016E03.y3 1114 - Unigene IV from Maize Genome... 44 5.1 1
(CA827528) 1114016A03.y3 1114 - Unigene IV from Maize Genome... 44 5.1 1
(BW268282) Ciona intestinalis cDNA, clone:cign004g20, 5' end... 44 5.1 1
(BW258887) Ciona intestinalis cDNA, clone:cign001a06, 5' end... 44 5.1 1
(BW138438) Ciona intestinalis cDNA, clone:rcign004g20, 3' en... 44 5.1 1
(BW129018) Ciona intestinalis cDNA, clone:rcign001a06, 3' en... 44 5.1 1
(BU750549) CH3#034_B05T3 Canine heart normalized cDNA Librar... 44 5.1 1
(BQ235772) hd85g04.g1 Canis Total Brain cDNAs Canis lupus fa... 44 5.1 1
(BQ048007) 1091001D06.y1 1091 - Immature ear with common EST... 44 5.1 1
(BQ048004) 1091001B02.y1 1091 - Immature ear with common EST... 44 5.1 1
(BQ047987) 1091001C11.y1 1091 - Immature ear with common EST... 44 5.1 1
>(BJ364581) Dictyostelium discoideum cDNA clone:ddc32a07, 5' end,
single read.
Length = 534
Score = 856 bits (432), Expect = 0.0
Identities = 432/432 (100%)
Strand = Plus / Plus
Query: 103 tgaagataacgaagatgaaaatacaattttaacaaaatcagcaaagaaagaacagtcatt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tgaagataacgaagatgaaaatacaattttaacaaaatcagcaaagaaagaacagtcatt 162
Query: 163 aaattttatattgaatagtttattttacaagaattcaacaaggtataagaataatagaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aaattttatattgaatagtttattttacaagaattcaacaaggtataagaataatagaaa 222
Query: 223 taatagaattaaaaacagtaatgaggatgataaagattactcatttcaaccaataaagag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 taatagaattaaaaacagtaatgaggatgataaagattactcatttcaaccaataaagag 282
Query: 283 tttaatagagttaccagatgatatactattaatgatattcagatatctagatgtaccaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttaatagagttaccagatgatatactattaatgatattcagatatctagatgtaccaac 342
Query: 343 attattaaaagtatcacaactttgtaatttcctaaatagcgtttcatcaaatcatgaact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attattaaaagtatcacaactttgtaatttcctaaatagcgtttcatcaaatcatgaact 402
Query: 403 ttggaaagagttattctttagaaaatggggaccactcttcccactcgtaccaggtttgta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttggaaagagttattctttagaaaatggggaccactcttcccactcgtaccaggtttgta 462
Query: 463 ccatcagttgttgtcatcaatatttctcaaatccatacctcttatttagaacccataaat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccatcagttgttgtcatcaatatttctcaaatccatacctcttatttagaacccataaat 522
Query: 523 caactattctca 534
||||||||||||
Sbjct: 523 caactattctca 534
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 566,741,144
Number of extensions: 34782237
Number of successful extensions: 3119691
Number of sequences better than 10.0: 123
Length of query: 543
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 520
Effective length of database: 93,106,754,628
Effective search space: 48415512406560
Effective search space used: 48415512406560
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 5 |
| Homology vs Protein |
Query= Contig-U12962-1 (Contig-U12962-1Q) /CSM_Contig/Contig-U12962-1Q.Seq.d
(543 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FN392320_208(FN392320|pid:none) Pichia pastoris GS115 chromosome... 46 7e-04
AY947341_1(AY947341|pid:none) Gallus gallus S-phase kinase-assoc... 46 7e-04
AJ719485_1(AJ719485|pid:none) Gallus gallus mRNA for hypothetica... 46 7e-04
AK059732_1(AK059732|pid:none) Oryza sativa Japonica Group cDNA c... 45 0.001
AK175424_1(AK175424|pid:none) Arabidopsis thaliana mRNA, partial... 45 0.002
BT068576_1(BT068576|pid:none) Zea mays full-length cDNA clone ZM... 45 0.002
BT038369_1(BT038369|pid:none) Zea mays full-length cDNA clone ZM... 45 0.002
AC122169_26(AC122169|pid:none) Medicago truncatula clone mth2-9m... 44 0.002
U64849_1(U64849|pid:none) Caenorhabditis elegans cosmid K04A8, c... 44 0.004
AM270030_28(AM270030|pid:none) Aspergillus niger contig An02c036... 43 0.005
BC097156_1(BC097156|pid:none) Danio rerio F-box protein 7, mRNA ... 43 0.005
AL845512_2(AL845512|pid:none) Zebrafish DNA sequence from clone ... 43 0.005
AJ851378_1(AJ851378|pid:none) Gallus gallus mRNA for hypothetica... 43 0.006
EU957304_1(EU957304|pid:none) Zea mays clone 1588237 hypothetica... 42 0.013
BC131841_1(BC131841|pid:none) Xenopus laevis hypothetical protei... 42 0.013
AY815832_1(AY815832|pid:none) Schistosoma japonicum SJCHGC05595 ... 41 0.023
AC116960_77(AC116960|pid:none) Dictyostelium discoideum chromoso... 40 0.030
BC110114_1(BC110114|pid:none) Danio rerio F-box and leucine-rich... 40 0.039
CU928173_27(CU928173|pid:none) Zygosaccharomyces rouxii strain C... 40 0.051
(Q6X9E4) RecName: Full=F-box/WD repeat-containing protein 12; Al... 40 0.051
BC151860_1(BC151860|pid:none) Danio rerio si:dkeyp-114g9.1, mRNA... 40 0.051
CR926459_4(CR926459|pid:none) Zebrafish DNA sequence from clone ... 40 0.051
AJ851479_1(AJ851479|pid:none) Gallus gallus mRNA for hypothetica... 40 0.051
AM920435_675(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 40 0.051
BC088730_1(BC088730|pid:none) Mus musculus F-box protein 11, mRN... 39 0.066
AK223592_1(AK223592|pid:none) Homo sapiens mRNA for F-box only p... 39 0.066
EF437352_1(EF437352|pid:none) Mus musculus isolate NTA2M18 F-box... 39 0.066
(Q9NR14) RecName: Full=F-box only protein 11; AltName: Full=Viti... 39 0.066
AY827075_1(AY827075|pid:none) Homo sapiens F-box protein 11 (FBX... 39 0.066
AK304140_1(AK304140|pid:none) Homo sapiens cDNA FLJ56417 complet... 39 0.066
AK292877_1(AK292877|pid:none) Homo sapiens cDNA FLJ77210 complet... 39 0.066
BC043258_1(BC043258|pid:none) Homo sapiens F-box protein 11, mRN... 39 0.066
BC151660_1(BC151660|pid:none) Bos taurus F-box protein 11, mRNA ... 39 0.066
AK297444_1(AK297444|pid:none) Homo sapiens cDNA FLJ55855 complet... 39 0.066
AM488321_2(AM488321|pid:none) Vitis vinifera contig VV78X214652.... 39 0.066
FN357910_5(FN357910|pid:none) Schistosoma mansoni genome sequenc... 39 0.066
AF351618_1(AF351618|pid:none) Homo sapiens UG063H01 mRNA, comple... 39 0.066
AX058090_1(AX058090|pid:none) Sequence 9 from Patent WO0077207. 39 0.087
(Q9NXK8) RecName: Full=F-box/LRR-repeat protein 12; AltName: Ful... 39 0.087
AF129537_1(AF129537|pid:none) Homo sapiens F-box protein Fbx7 (F... 39 0.087
AL021937_15(AL021937|pid:none) Human DNA sequence from clone RP1... 39 0.087
AE013599_1379(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.087
AK297841_1(AK297841|pid:none) Homo sapiens cDNA FLJ52705 complet... 39 0.087
AX058088_1(AX058088|pid:none) Sequence 7 from Patent WO0077207. 39 0.087
AE013599_1380(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.087
CR942694_1(CR942694|pid:none) Xenopus tropicalis finished cDNA, ... 39 0.087
FN317355_1(FN317355|pid:none) Schistosoma japonicum isolate Anhu... 39 0.087
AB385082_1(AB385082|pid:none) Synthetic construct DNA, clone: pF... 39 0.087
AY809839_1(AY809839|pid:none) Schistosoma japonicum SJCHGC05795 ... 39 0.087
FN357892_6(FN357892|pid:none) Schistosoma mansoni genome sequenc... 39 0.087
AK301716_1(AK301716|pid:none) Homo sapiens cDNA FLJ55022 complet... 39 0.087
CR858720_1(CR858720|pid:none) Pongo abelii mRNA; cDNA DKFZp469H0... 39 0.087
AK291972_1(AK291972|pid:none) Homo sapiens cDNA FLJ76913 complet... 39 0.087
BC040428_1(BC040428|pid:none) Mus musculus F-box and WD-40 domai... 39 0.087
AE013599_1382(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.087
BC080960_1(BC080960|pid:none) Xenopus tropicalis F-box and WD-40... 39 0.087
AY888598_1(AY888598|pid:none) Synthetic construct Homo sapiens c... 39 0.11
I39171(I39171) cyclin A/CDK2-associated p45 - human &U33761_1(U... 39 0.11
BX648644_1(BX648644|pid:none) Homo sapiens mRNA; cDNA DKFZp686B0... 39 0.11
AM270155_33(AM270155|pid:none) Aspergillus niger contig An07c038... 39 0.11
AK087710_1(AK087710|pid:none) Mus musculus 2 days pregnant adult... 39 0.11
AK295152_1(AK295152|pid:none) Homo sapiens cDNA FLJ53740 complet... 39 0.11
AB050980_1(AB050980|pid:none) Homo sapiens skp2-beta mRNA for SK... 39 0.11
AB050981_1(AB050981|pid:none) Homo sapiens skp2-gamma mRNA for S... 39 0.11
BT059276_1(BT059276|pid:none) Salmo salar clone ssal-rgf-538-059... 39 0.11
CU633901_169(CU633901|pid:none) Podospora anserina genomic DNA c... 38 0.15
AK054339_1(AK054339|pid:none) Mus musculus 2 days pregnant adult... 38 0.15
BC095831_1(BC095831|pid:none) Danio rerio zgc:112485, mRNA (cDNA... 38 0.15
(Q2T9S7) RecName: Full=F-box only protein 7; &BC111286_1(BC1112... 38 0.15
CU928170_283(CU928170|pid:none) Kluyveromyces thermotolerans str... 38 0.15
BC117884_1(BC117884|pid:none) Mus musculus F-box protein 11, mRN... 38 0.15
AP007151_1254(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 38 0.15
AP007155_651(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.19
AL627144_3(AL627144|pid:none) Human DNA sequence from clone RP11... 37 0.25
AK054298_1(AK054298|pid:none) Mus musculus 2 days pregnant adult... 37 0.25
AK314735_1(AK314735|pid:none) Homo sapiens cDNA, FLJ95597, highl... 37 0.25
(Q3U7U3) RecName: Full=F-box only protein 7; &AK150626_1(AK1506... 37 0.25
AK147797_1(AK147797|pid:none) Mus musculus melanocyte cDNA, RIKE... 37 0.25
FM992691_9(FM992691|pid:none) Candida dubliniensis CD36 chromoso... 37 0.25
EU961327_1(EU961327|pid:none) Zea mays clone 234532 F-box domain... 37 0.25
BC032153_1(BC032153|pid:none) Mus musculus F-box protein 7, mRNA... 37 0.25
EU963509_1(EU963509|pid:none) Zea mays clone 263463 F-box domain... 37 0.25
AC115607_4(AC115607|pid:none) Dictyostelium discoideum chromosom... 37 0.25
DQ228920_1(DQ228920|pid:none) Xenopus laevis S-phase kinase-asso... 37 0.33
AB171373_1(AB171373|pid:none) Macaca fascicularis brain cDNA clo... 37 0.33
BC080701_1(BC080701|pid:none) Mus musculus predicted gene, EG382... 37 0.33
BC077820_1(BC077820|pid:none) Xenopus laevis MGC80471 protein, m... 37 0.33
(Q5XUX1) RecName: Full=F-box/WD repeat-containing protein 9; Alt... 37 0.43
(Q9P7W4) RecName: Full=F-box/WD repeat-containing protein pof10;... 37 0.43
BC166459_1(BC166459|pid:none) Rattus norvegicus S-phase kinase-a... 37 0.43
(Q9Z0Z3) RecName: Full=S-phase kinase-associated protein 2; AltN... 37 0.43
(Q04511) RecName: Full=Ubiquitin ligase complex F-box protein UF... 37 0.43
AK123037_1(AK123037|pid:none) Homo sapiens cDNA FLJ41042 fis, cl... 37 0.43
(Q9LUB6) RecName: Full=F-box protein SNE; AltName: Full=Protein ... 37 0.43
BC100319_1(BC100319|pid:none) Mus musculus F-box and WD-40 domai... 37 0.43
(Q9JMJ2) RecName: Full=F-box/WD repeat-containing protein 4; Alt... 37 0.43
AE014297_62(AE014297|pid:none) Drosophila melanogaster chromosom... 36 0.56
AE014297_61(AE014297|pid:none) Drosophila melanogaster chromosom... 36 0.56
AY231713_1(AY231713|pid:none) Drosophila yakuba clone yak-em_CG9... 36 0.56
AJ243961_4(AJ243961|pid:none) Oryza sativa chromosome 4 BAC l133... 36 0.56
CT827957_8(CT827957|pid:none) Oryza sativa genomic DNA, chromoso... 36 0.56
AE017347_66(AE017347|pid:none) Cryptococcus neoformans var. neof... 36 0.56
AF174599_1(AF174599|pid:none) Homo sapiens F-box protein Fbx11 (... 36 0.56
AE017347_67(AE017347|pid:none) Cryptococcus neoformans var. neof... 36 0.56
CP001102_881(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 36 0.73
BC168431_1(BC168431|pid:none) Xenopus tropicalis cDNA clone MGC:... 36 0.73
CP001019_1476(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co... 36 0.73
CP001102_748(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 36 0.73
BC076869_1(BC076869|pid:none) Xenopus laevis F-box protein 11, m... 36 0.73
AK136230_1(AK136230|pid:none) Mus musculus in vitro fertilized e... 36 0.73
BT078448_1(BT078448|pid:none) Lepeophtheirus salmonis Pacific fo... 36 0.73
BC127360_1(BC127360|pid:none) Xenopus tropicalis hypothetical pr... 36 0.73
(Q32PG9) RecName: Full=F-box/LRR-repeat protein 12; AltName: Ful... 36 0.73
AY810929_1(AY810929|pid:none) Schistosoma japonicum SJCHGC06384 ... 35 0.96
AB107793_1(AB107793|pid:none) Labidochromis caeruleus hagoromo m... 35 0.96
FN357424_7(FN357424|pid:none) Schistosoma mansoni genome sequenc... 35 0.96
AB107792_1(AB107792|pid:none) Labidochromis caeruleus hagoromo m... 35 0.96
FN317012_1(FN317012|pid:none) Schistosoma japonicum isolate Anhu... 35 0.96
BT003599_1(BT003599|pid:none) Drosophila melanogaster GM10337 fu... 35 0.96
AK143322_1(AK143322|pid:none) Mus musculus 2 days pregnant adult... 35 1.3
BC166343_1(BC166343|pid:none) Xenopus tropicalis hypothetical pr... 35 1.3
AM920433_594(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 35 1.3
AK135771_1(AK135771|pid:none) Mus musculus in vitro fertilized e... 35 1.3
BC125857_1(BC125857|pid:none) Danio rerio zgc:153171, mRNA (cDNA... 35 1.3
AY960873_1(AY960873|pid:none) Danio rerio F-box and WD-40 domain... 35 1.3
AK162190_1(AK162190|pid:none) Mus musculus in vitro fertilized e... 35 1.3
AE014297_4556(AE014297|pid:none) Drosophila melanogaster chromos... 35 1.3
AE014297_4557(AE014297|pid:none) Drosophila melanogaster chromos... 35 1.3
BC145098_1(BC145098|pid:none) Mus musculus F-box and WD-40 domai... 35 1.3
BC138018_1(BC138018|pid:none) Mus musculus F-box and WD-40 domai... 35 1.3
AF026206_3(AF026206|pid:none) Caenorhabditis elegans cosmid T28B... 35 1.3
FM992695_153(FM992695|pid:none) Candida dubliniensis CD36 chromo... 35 1.6
AM423345_2(AM423345|pid:none) Vitis vinifera contig VV78X088191.... 35 1.6
(Q9FLX3) RecName: Full=F-box protein At5g52880; &AB009055_9(AB0... 35 1.6
BC161548_1(BC161548|pid:none) Xenopus tropicalis cDNA clone MGC:... 35 1.6
BC122914_1(BC122914|pid:none) Xenopus tropicalis hypothetical pr... 35 1.6
BC103020_1(BC103020|pid:none) Bos taurus F-box and WD repeat dom... 35 1.6
CR382122_199(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 35 1.6
BC078124_1(BC078124|pid:none) Xenopus laevis F-box protein 3, mR... 35 1.6
FN392321_179(FN392321|pid:none) Pichia pastoris GS115 chromosome... 35 1.6
BC047214_1(BC047214|pid:none) Mus musculus F-box and leucine-ric... 34 2.1
AK171783_1(AK171783|pid:none) Mus musculus activated spleen cDNA... 34 2.1
AB037997_1(AB037997|pid:none) Danio rerio hagoromo gene, exons 1... 34 2.1
BT074927_1(BT074927|pid:none) Osmerus mordax clone omor-rgc-520-... 34 2.1
AK150664_1(AK150664|pid:none) Mus musculus bone marrow macrophag... 34 2.1
AK029957_1(AK029957|pid:none) Mus musculus adult male testis cDN... 34 2.1
CP000478_779(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 34 2.1
AK088067_1(AK088067|pid:none) Mus musculus 2 days neonate thymus... 34 2.1
AY223058_1(AY223058|pid:none) Schistosoma japonicum SJCHGC00996 ... 34 2.8
BC090262_1(BC090262|pid:none) Danio rerio F-box and leucine-rich... 34 2.8
AY685231_1(AY685231|pid:none) Neurospora crassa F-box/WD-40 repe... 34 2.8
BC099378_1(BC099378|pid:none) Mus musculus F-box and WD-40 domai... 34 2.8
BC059683_1(BC059683|pid:none) Danio rerio F-box and leucine-rich... 34 2.8
AY398381_1(AY398381|pid:none) Danio rerio clone RK131A2B02 hypot... 33 3.6
AL714005_1(AL714005|pid:none) Zebrafish DNA sequence from clone ... 33 3.6
AM392665_1(AM392665|pid:none) Synthetic construct Homo sapiens c... 33 3.6
AC112209_11(AC112209|pid:none) Oryza sativa (japonica cultivar-g... 33 3.6
AK087808_1(AK087808|pid:none) Mus musculus 2 days pregnant adult... 33 3.6
AF157323_1(AF157323|pid:none) Homo sapiens p45SKP2-like protein ... 33 3.6
AC114744_1(AC114744|pid:none) Homo sapiens BAC clone RP11-115L11... 33 3.6
BX537957_1(BX537957|pid:none) Homo sapiens mRNA; cDNA DKFZp686A1... 33 3.6
BC083474_1(BC083474|pid:none) Danio rerio F-box and leucine-rich... 33 3.6
AF176700_1(AF176700|pid:none) Homo sapiens F-box protein FBL5 mR... 33 3.6
AC109596_12(AC109596|pid:none) Oryza sativa (japonica cultivar-g... 33 4.8
AP008217_1168(AP008217|pid:none) Oryza sativa (japonica cultivar... 33 4.8
AC148655_16(AC148655|pid:none) Medicago truncatula clone mth2-61... 33 4.8
BT059244_1(BT059244|pid:none) Salmo salar clone ssal-rgf-536-037... 33 4.8
EU969867_1(EU969867|pid:none) Zea mays clone 336632 F-box domain... 33 4.8
FN357341_29(FN357341|pid:none) Schistosoma mansoni genome sequen... 33 4.8
T32441(T32441)hypothetical protein T28B4.1 - Caenorhabditis eleg... 33 4.8
BC163001_1(BC163001|pid:none) Danio rerio F-box and leucine-rich... 33 4.8
AK154911_1(AK154911|pid:none) Mus musculus NOD-derived CD11c +ve... 33 4.8
BT045283_1(BT045283|pid:none) Salmo salar clone ssal-rgf-517-150... 33 6.2
AC147426_15(AC147426|pid:none) Oryza sativa chromosome 3 B1377B... 33 6.2
BC083245_1(BC083245|pid:none) Danio rerio zgc:101682, mRNA (cDNA... 33 6.2
(Q3ZBT2) RecName: Full=F-box only protein 9; &BC103124_1(BC1031... 33 6.2
BT064366_1(BT064366|pid:none) Zea mays full-length cDNA clone ZM... 32 8.1
BT045051_1(BT045051|pid:none) Salmo salar clone ssal-rgf-510-267... 32 8.1
BC121976_1(BC121976|pid:none) Xenopus tropicalis F-box protein 3... 32 8.1
(Q9SMY8) RecName: Full=F-box/LRR-repeat protein 15; 32 8.1
(Q18262) RecName: Full=Uncharacterized F-box protein C27F2.7; &... 32 8.1
BC134165_1(BC134165|pid:none) Danio rerio S-phase kinase-associa... 32 8.1
T15664(T15664)hypothetical protein C27F2.7 - Caenorhabditis eleg... 32 8.1
(Q5UPK2) RecName: Full=Putative F-box protein L126; &AY653733_1... 32 8.1
BT045444_1(BT045444|pid:none) Salmo salar clone ssal-rgf-521-303... 32 8.1
AL035525_14(AL035525|pid:none) Arabidopsis thaliana DNA chromoso... 32 8.1
(O74381) RecName: Full=F-box protein pof9; &AB061727_1(AB061727... 32 8.1
AC108884_28(AC108884|pid:none) Oryza sativa (japonica cultivar-g... 32 8.1
BT061293_1(BT061293|pid:none) Zea mays full-length cDNA clone ZM... 32 8.1
CR761404_1(CR761404|pid:none) Xenopus tropicalis finished cDNA, ... 32 8.1
EU962221_1(EU962221|pid:none) Zea mays clone 241046 F-box only p... 32 8.1
BT048825_1(BT048825|pid:none) Salmo salar clone ssal-rgb2-587-14... 32 8.1
>FN392320_208(FN392320|pid:none) Pichia pastoris GS115 chromosome 2,
complete sequence.
Length = 686
Score = 45.8 bits (107), Expect = 7e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +2
Query: 272 PIKSLIELPDDILLMIFRYLDVPTLLKVSQLCNFLNSVSSNHELWKELFFRKWG 433
P++ L ELP ++L+ IF +LD TL +S +C V +++ELW+E F + +G
Sbjct: 24 PVRGLPELPSEVLVTIFSFLDPMTLDGLSLVCKRWKMVINDNELWRENFIKFFG 77
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 650,586,931
Number of extensions: 11438660
Number of successful extensions: 24090
Number of sequences better than 10.0: 192
Number of HSP's gapped: 24082
Number of HSP's successfully gapped: 192
Length of query: 181
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 61
Effective length of database: 662,793,784
Effective search space: 40430420824
Effective search space used: 40430420824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |