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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12949-1
Contig ID Contig-U12949-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12949-1 (Contig-U12949-1Q) /CSM_Contig/Contig-U12949-1Q.Seq.d
TTCGTGAAGAGATTATTCCAGAGTTTTTCAAACAATTTTGGGTTAGAAGA
ATGGCATTGGATAAGAGAAACTATAAACTATTGGTTGAAACAACACTTGA
AATTGCAAATAAAGTTGGTGGTGGTGAAATTATTGAAAGAATTGTTGATG
ATCTTAAAGATGAATCCGAAGCCTATAGAAGAATGGTAATGGAGGCAATT
GAAAAGATAGTTTCAACATTGGGTGCATCGGATATTAGTCCAACATTGGA
GGAGAGATTAATCGATGGTATTCTCTATGCATTCCAAGAACAAACCACCG
ATGAAACTTCAATTATGTTACAAGGTTTTGGTACTGTTGTATTGGCTTTG
AATACTCGTATTCAACCTTATCTTCAACAAATCGCTGGTACCATTAAATG
GAGACTCAATAATAAATCTGCAAAGGTTAGACAACAAGCAGCCGATTTAA
TCTCACGTATTGCTGTGGTTATGATGAATTGTGGTGAAGAGCAACTCTTG
TCACATTTGGGTCAAATTCTTTATGAATATTTAGGTGAAGAGTATCCAGA
GGTATTGGGTTCAATCCTAGGTGCATTGAAGGCCATTGTAAATGTAATTG
GTATGACTAANNNNNNNNN
Gap no gap
Contig length 619
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6174909
End point 6174300
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U12949
List of clone(s) 

est1=CHD773F,1,610
Translated Amino Acid sequence 
REEIIPEFFKQFWVRRMALDKRNYKLLVETTLEIANKVGGGEIIERIVDDLKDESEAYRR
MVMEAIEKIVSTLGASDISPTLEERLIDGILYAFQEQTTDETSIMLQGFGTVVLALNTRI
QPYLQQIAGTIKWRLNNKSAKVRQQAADLISRIAVVMMNCGEEQLLSHLGQILYEYLGEE
YPEVLGSILGALKAIVNVIGMTXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
fvkrlfqsfsnnfgleewhwiretinywlkqhlklqiklvvvkllkellmilkmnpkpie
ew*wrqlkr*fqhwvhrilvqhwrrd*smvfsmhsknkppmklqlcykvlvllywl*ilv
fnlifnkslvplngdsiinlqrldnkqpi*shvllwl**ivvksnschiwvkffmni*vk
siqrywvqs*vh*rpl*m*lv*lxxx


Frame B:
s*rdysrvfqtilg*kngig*ekl*tig*nnt*nck*swww*ny*knc**s*r*irsl*k
ngnggn*kdsfnigcigy*sniggeinrwyslciprtnhr*nfnyvtrfwyccigfeysy
stlsstnrwyh*metq**ickg*ttssrfnltyccgydelw*ratlvtfgsnsl*ifr*r
vsrgigfnprcieghckcnwyd*xxx


Frame C:
REEIIPEFFKQFWVRRMALDKRNYKLLVETTLEIANKVGGGEIIERIVDDLKDESEAYRR
MVMEAIEKIVSTLGASDISPTLEERLIDGILYAFQEQTTDETSIMLQGFGTVVLALNTRI
QPYLQQIAGTIKWRLNNKSAKVRQQAADLISRIAVVMMNCGEEQLLSHLGQILYEYLGEE
YPEVLGSILGALKAIVNVIGMTXXX
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12949-1 (Contig-U12949-1Q)
/CSM_Contig/Contig-U12949-1Q.Seq.d
         (619 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12949-1 (Contig-U12949-1Q) /CSM_Contig/Conti...  1209  0.0
Contig-U11660-1 (Contig-U11660-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U13301-1 (Contig-U13301-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12419-1 (Contig-U12419-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11940-1 (Contig-U11940-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U02926-1 (Contig-U02926-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U14378-1 (Contig-U14378-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U12949-1 (Contig-U12949-1Q) /CSM_Contig/Contig-U12949-1Q.Seq.d
          Length = 619

 Score = 1209 bits (610), Expect = 0.0
 Identities = 610/610 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgtgaagagattattccagagtttttcaaacaattttgggttagaagaatggcattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttcgtgaagagattattccagagtttttcaaacaattttgggttagaagaatggcattgg 60

                                                                       
Query: 61  ataagagaaactataaactattggttgaaacaacacttgaaattgcaaataaagttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataagagaaactataaactattggttgaaacaacacttgaaattgcaaataaagttggtg 120

                                                                       
Query: 121 gtggtgaaattattgaaagaattgttgatgatcttaaagatgaatccgaagcctatagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtggtgaaattattgaaagaattgttgatgatcttaaagatgaatccgaagcctatagaa 180

                                                                       
Query: 181 gaatggtaatggaggcaattgaaaagatagtttcaacattgggtgcatcggatattagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatggtaatggaggcaattgaaaagatagtttcaacattgggtgcatcggatattagtc 240

                                                                       
Query: 241 caacattggaggagagattaatcgatggtattctctatgcattccaagaacaaaccaccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caacattggaggagagattaatcgatggtattctctatgcattccaagaacaaaccaccg 300

                                                                       
Query: 301 atgaaacttcaattatgttacaaggttttggtactgttgtattggctttgaatactcgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgaaacttcaattatgttacaaggttttggtactgttgtattggctttgaatactcgta 360

                                                                       
Query: 361 ttcaaccttatcttcaacaaatcgctggtaccattaaatggagactcaataataaatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcaaccttatcttcaacaaatcgctggtaccattaaatggagactcaataataaatctg 420

                                                                       
Query: 421 caaaggttagacaacaagcagccgatttaatctcacgtattgctgtggttatgatgaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaaggttagacaacaagcagccgatttaatctcacgtattgctgtggttatgatgaatt 480

                                                                       
Query: 481 gtggtgaagagcaactcttgtcacatttgggtcaaattctttatgaatatttaggtgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtggtgaagagcaactcttgtcacatttgggtcaaattctttatgaatatttaggtgaag 540

                                                                       
Query: 541 agtatccagaggtattgggttcaatcctaggtgcattgaaggccattgtaaatgtaattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agtatccagaggtattgggttcaatcctaggtgcattgaaggccattgtaaatgtaattg 600

                     
Query: 601 gtatgactaa 610
           ||||||||||
Sbjct: 601 gtatgactaa 610


>Contig-U11660-1 (Contig-U11660-1Q) /CSM_Contig/Contig-U11660-1Q.Seq.d
          Length = 770

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 468 gttatgatgaattgtggtga 487
           ||||||||||||||||||||
Sbjct: 547 gttatgatgaattgtggtga 566


>Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Contig-U13938-1Q.Seq.d
          Length = 1111

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 195 gcaattgaaaagatagtttcaacatt 220
           |||||| ||||||| |||||||||||
Sbjct: 76  gcaattaaaaagattgtttcaacatt 101


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6987
Number of Sequences: 6905
Number of extensions: 6987
Number of successful extensions: 690
Number of sequences better than 10.0: 70
length of query: 619
length of database: 5,674,871
effective HSP length: 16
effective length of query: 603
effective length of database: 5,564,391
effective search space: 3355327773
effective search space used: 3355327773
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 4
Homology vs DNA 
Query= Contig-U12949-1 (Contig-U12949-1Q) /CSM_Contig/Contig-U12949-1Q.Seq.d
         (619 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117082) Dictyostelium discoideum chromosome 2 map complem...  1209   0.0    1
(BJ364059) Dictyostelium discoideum cDNA clone:ddc29b19, 5' ...  1209   0.0    1
(AY410324) Mus musculus SF3B1 gene, VIRTUAL TRANSCRIPT, part...    50   3e-17  5
(AB037890) Mus musculus Sf3b1 mRNA for pre-mRNA splicing fac...    50   2e-16  5
(BF102338) 601751949F1 NCI_CGAP_Mam1 Mus musculus cDNA clone...    50   2e-16  4
(BU671129) NISC_lr05d07.y1 NCI_CGAP_Pr49 Rattus norvegicus c...    48   3e-16  4
(CK633928) UI-M-HN0-cne-k-06-0-UI.r1 NIH_BMAP_HN0 Mus muscul...    50   3e-16  4
(CF531673) UI-M-FY0-cgq-o-14-0-UI.r1 NIH_BMAP_FY0 Mus muscul...    50   3e-16  4
(CF727883) UI-M-HB0-ckl-h-21-0-UI.r1 NIH_BMAP_HB0 Mus muscul...    50   4e-16  4
(BU707797) UI-M-FR0-cao-k-23-0-UI.r1 NIH_BMAP_FR0 Mus muscul...    50   4e-16  4
(EE607920) CHWL3300.b1_G10.ab1 CHW(LMS) silverleaf sunflower...    62   4e-16  3
(BU707673) UI-M-FR0-cam-f-02-0-UI.r1 NIH_BMAP_FR0 Mus muscul...    50   4e-16  4
(CF749312) UI-M-HJ0-cmk-a-02-0-UI.r1 NIH_BMAP_HJ0 Mus muscul...    50   4e-16  4
(CB520151) UI-M-GI0-cei-c-08-0-UI.r1 NIH_BMAP_GI0 Mus muscul...    50   4e-16  4
(CB574529) AGENCOURT_13147161 NIH_MGC_136 Mus musculus cDNA ...    50   5e-16  4
(EV766314) AGENCOURT_109867988 NIH_MGC_418 Rattus norvegicus...    48   5e-16  4
(EW512747) rpro37_n1.y1 pro Sus scrofa cDNA 5', mRNA sequence.     50   7e-16  4
(EV768928) AGENCOURT_109866202 NIH_MGC_420 Rattus norvegicus...    48   8e-16  4
(CA984165) AGENCOURT_11292671 NIH_MGC_164 Mus musculus cDNA ...    50   8e-16  4
(BG974808) 602845182F1 NCI_CGAP_Mam4 Mus musculus cDNA clone...    50   9e-16  4
(BU519610) AGENCOURT_10166916 NIH_MGC_134 Mus musculus cDNA ...    50   6e-15  4
(CN526934) UI-M-HB0-cpb-f-21-0-UI.r1 NIH_BMAP_HB0 Mus muscul...    50   5e-14  4
(FC762851) CBBN13548.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar...    62   3e-13  4
(CK636969) UI-M-HO0-cnr-g-05-0-UI.r1 NIH_BMAP_HO0 Mus muscul...    50   8e-13  3
(CN524907) UI-M-GH0-chb-i-09-0-UI.r1 NIH_BMAP_GH0 Mus muscul...    50   9e-13  3
(CF749768) UI-M-HJ0-cmn-d-05-0-UI.r1 NIH_BMAP_HJ0 Mus muscul...    50   5e-12  4
(AL363419) Mus musculus mRNA; expressed sequence tag; clone ...    44   2e-11  3
(AJ663604) Sus scrofa EST, clone C0001062_H06.                     50   7e-11  3
(AY410322) Homo sapiens SF3B1 gene, VIRTUAL TRANSCRIPT, part...    42   9e-11  4
(AJ686048) Sus scrofa EST, clone C0001810_L14.                     50   9e-11  3
(CQ720030) Sequence 5964 from Patent WO02068579.                   42   1e-10  4
(DD458291) High throughput functional genomic screening meth...    42   1e-10  4
(DD231788) METHODS AND COMPOSITIONS FOR DIAGNOSING AND MONIT...    42   1e-10  4
(DD145320) Angiogenesis_PCT.                                       42   1e-10  4
(CS544275) Sequence 5 from Patent WO2006034278.                    42   1e-10  4
(CS351102) Sequence 486 from Patent WO2006013561.                  42   1e-10  4
(CQ899327) Sequence 50 from Patent WO2004092413.                   42   1e-10  4
(AF054284) Homo sapiens spliceosomal protein SAP 155 mRNA, c...    42   1e-10  4
(AR448126) Sequence 799 from patent US 6673549.                    42   1e-10  4
(L26779) MUSF326A lambda unizap male testis Mus musculus cDN...    50   1e-10  3
(CQ414823) Sequence 21894 from Patent WO0170979.                   42   2e-10  4
(DT321886) SusFleck_BFN_0021_0024_5_pCNS_L22 SusFleck Backfa...    50   2e-10  3
(CJ472354) Macaca fascicularis mRNA, clone: QorA-12153, 5' e...    42   2e-10  4
(FD791445) 07VANA7_T7_041_D09_01MAR2006_073 07VANA7 Phaseolu...    44   3e-10  3
(CU468160) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   5e-10  5
(EU020478) Tanystylum orbiculare clone Tor26f3 putative spli...    46   7e-10  3
(BB832951) Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDN...    50   1e-09  3
(CN461784) UI-M-HB0-cox-h-23-0-UI.r1 NIH_BMAP_HB0 Mus muscul...    50   2e-09  3
(AC166111) Mus musculus BAC clone RP23-68O7 from chromosome ...    50   2e-09  5
(BE368579) 601220578F1 NCI_CGAP_Lu29 Mus musculus cDNA clone...    50   2e-09  3
(AC094182) Rattus norvegicus clone CH230-3A6, WORKING DRAFT ...    48   3e-09  4
(CJ468376) Macaca fascicularis mRNA, clone: QnpA-18231, 5' e...    42   3e-09  3
(AJ828576) Helianthus annuus EST, clone HaCotR001D11.              52   3e-09  2
(AC128436) Rattus norvegicus clone CH230-101P20, *** SEQUENC...    48   4e-09  4
(AC108391) Mus musculus chromosome 1, clone RP23-16N14, comp...    50   7e-09  5
(FC591109) CAXP6347.fwd CAXP Lottia gigantea from head, foot...    62   1e-08  3
(CR751882) Pongo abelii mRNA; EST DKFZp469M0416_r1 (from clo...    42   1e-08  3
(DN214645) MEST863_B08.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRN...    66   2e-08  2
(AP008107) Lotus japonicus genomic DNA, chromosome 6, clone:...    50   4e-08  5
(CO563151) AGENCOURT_28622671 NIH_MGC_250 Rattus norvegicus ...    46   4e-08  3
(CB805683) AMGNNUC:CR1-00124-H2-A Colon Rat 1 (10390) Rattus...    48   5e-08  2
(CV459033) ram01-1ms4-d06 Ram01 Ribes americanum cDNA clone ...    44   5e-08  4
(DR948932) EST1140471 Aquilegia cDNA library Aquilegia formo...    70   1e-07  1
(DR944589) EST1136128 Aquilegia cDNA library Aquilegia formo...    70   1e-07  1
(AP004112) Oryza sativa Japonica Group genomic DNA, chromoso...    66   1e-07  4
(AP005649) Oryza sativa Japonica Group genomic DNA, chromoso...    66   2e-07  4
(DT331454) SusFleck_BF_0037_0040_5_pCNS_F08 SusFleck Backfat...    50   5e-07  2
(EW382966) rmed19c_j13.y1 med Sus scrofa cDNA 5', mRNA seque...    50   5e-07  2
(AJ682041) Sus scrofa EST, clone C0001797_P04.                     50   5e-07  2
(BI118514) AR15D10 Infected Porcine Thymus cDNA library Sus ...    50   5e-07  2
(AJ664800) Sus scrofa EST, clone C0000029_F11.                     50   5e-07  2
(AJ661797) Sus scrofa EST, clone C0000937_J19.                     50   5e-07  2
(AM444627) Vitis vinifera contig VV78X106093.37, whole genom...    36   5e-07  3
(BW600576) Lotus japonicus cDNA, clone: LjFL1-001-DG04, 5' e...    44   6e-07  3
(AP005288) Oryza sativa Japonica Group genomic DNA, chromoso...    66   7e-07  2
(AM454580) Vitis vinifera contig VV78X147332.4, whole genome...    56   1e-06  2
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    66   2e-06  1
(AK071377) Oryza sativa Japonica Group cDNA clone:J023098A02...    66   2e-06  1
(EA701355) Sequence 80234 from patent US 7365185.                  66   2e-06  1
(AC196708) Zea mays chromosome 4 clone CH201-460G11; ZMMBBc0...    66   2e-06  1
(CC171606) ii72h08.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    66   2e-06  1
(CI597728) Oryza sativa Japonica Group cDNA, clone: J02B3098...    66   2e-06  1
(AK067944) Oryza sativa Japonica Group cDNA clone:J013123M24...    50   2e-06  2
(DV675683) CGN-12745 Seed of Middle Development Stage Coffea...    46   2e-06  2
(AC204090) Macaca mulatta chromosome 12 clone CH250-453D21, ...    44   3e-06  5
(FC842790) CBHN2199.fwd CBHN Metridium senile tentacle Metri...    38   4e-06  4
(EA700831) Sequence 79710 from patent US 7365185.                  50   8e-06  2
(AJ763221) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    40   8e-06  3
(AC220543) Bos taurus clone CH240-354N20, WORKING DRAFT SEQU...    50   2e-05  2
(AV835479) Hordeum vulgare subsp. spontaneum cv.H602 cDNA cl...    62   2e-05  1
(EU020471) Limulus polyphemus clone Lpo26f3 putative splicin...    48   3e-05  3
(EU020475) Podura aquatica clone Paq26f3 putative splicing f...    40   3e-05  3
(DV913161) LB02826.CR_G20 GC_BGC-28 Bos taurus cDNA clone IM...    50   3e-05  2
(EE359131) LB02965.CR_H12 GC_BGC-29 Bos taurus cDNA clone IM...    50   3e-05  2
(EE365350) LB02971.CR_O15 GC_BGC-29 Bos taurus cDNA clone IM...    50   3e-05  2
(DN549597) 1407901 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    50   3e-05  2
(EE368247) LB029106.CR_N09 GC_BGC-29 Bos taurus cDNA clone I...    50   3e-05  2
(CK964494) 4079461 BARC 9BOV Bos taurus cDNA clone 9BOV14_H1...    50   3e-05  2
(EE816842) 010914ONDC181046HT ONDC Ovis aries cDNA, mRNA seq...    50   3e-05  2
(EE852402) 021030OSPA1015032HT OSPA Ovis aries cDNA, mRNA se...    50   3e-05  2

>(AC117082) Dictyostelium discoideum chromosome 2 map
             complement(6807709-6776860) strain AX4, complete sequence.
          Length = 30849

 Score = 1209 bits (610), Expect = 0.0
 Identities = 610/610 (100%)
 Strand = Plus / Plus


Query: 1     ttcgtgaagagattattccagagtttttcaaacaattttgggttagaagaatggcattgg 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17629 ttcgtgaagagattattccagagtttttcaaacaattttgggttagaagaatggcattgg 17688


Query: 61    ataagagaaactataaactattggttgaaacaacacttgaaattgcaaataaagttggtg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17689 ataagagaaactataaactattggttgaaacaacacttgaaattgcaaataaagttggtg 17748


Query: 121   gtggtgaaattattgaaagaattgttgatgatcttaaagatgaatccgaagcctatagaa 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17749 gtggtgaaattattgaaagaattgttgatgatcttaaagatgaatccgaagcctatagaa 17808


Query: 181   gaatggtaatggaggcaattgaaaagatagtttcaacattgggtgcatcggatattagtc 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17809 gaatggtaatggaggcaattgaaaagatagtttcaacattgggtgcatcggatattagtc 17868


Query: 241   caacattggaggagagattaatcgatggtattctctatgcattccaagaacaaaccaccg 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17869 caacattggaggagagattaatcgatggtattctctatgcattccaagaacaaaccaccg 17928


Query: 301   atgaaacttcaattatgttacaaggttttggtactgttgtattggctttgaatactcgta 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17929 atgaaacttcaattatgttacaaggttttggtactgttgtattggctttgaatactcgta 17988


Query: 361   ttcaaccttatcttcaacaaatcgctggtaccattaaatggagactcaataataaatctg 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17989 ttcaaccttatcttcaacaaatcgctggtaccattaaatggagactcaataataaatctg 18048


Query: 421   caaaggttagacaacaagcagccgatttaatctcacgtattgctgtggttatgatgaatt 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18049 caaaggttagacaacaagcagccgatttaatctcacgtattgctgtggttatgatgaatt 18108


Query: 481   gtggtgaagagcaactcttgtcacatttgggtcaaattctttatgaatatttaggtgaag 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18109 gtggtgaagagcaactcttgtcacatttgggtcaaattctttatgaatatttaggtgaag 18168


Query: 541   agtatccagaggtattgggttcaatcctaggtgcattgaaggccattgtaaatgtaattg 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18169 agtatccagaggtattgggttcaatcctaggtgcattgaaggccattgtaaatgtaattg 18228


Query: 601   gtatgactaa 610
             ||||||||||
Sbjct: 18229 gtatgactaa 18238

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 658,627,952
Number of extensions: 36782560
Number of successful extensions: 2870589
Number of sequences better than 10.0: 318
Length of query: 619
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 596
Effective length of database: 93,106,754,628
Effective search space: 55491625758288
Effective search space used: 55491625758288
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U12949-1 (Contig-U12949-1Q) /CSM_Contig/Contig-U12949-1Q.Seq.d
         (619 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008208_305(AP008208|pid:none) Oryza sativa (japonica cultivar-...   313   2e-84
EU020471_1(EU020471|pid:none) Limulus polyphemus clone Lpo26f3 p...   300   2e-80
EU020472_1(EU020472|pid:none) Mesocyclops edax clone Meso26f3 pu...   300   3e-80
AE014134_132(AE014134|pid:none) Drosophila melanogaster chromoso...   299   4e-80
(O57683) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   297   1e-79
(O75533) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   297   1e-79
EU020473_1(EU020473|pid:none) Narceus americanus clone Nam26f3 p...   297   1e-79
EU020470_1(EU020470|pid:none) Lithobius forticatus clone Lfo26f3...   297   2e-79
DQ206533_1(DQ206533|pid:none) Suberites fuscus isolate TOA37 spl...   293   2e-78
CP001324_246(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   293   3e-78
FN357373_1(FN357373|pid:none) Schistosoma mansoni genome sequenc...   292   4e-78
FN357373_3(FN357373|pid:none) Schistosoma mansoni genome sequenc...   292   4e-78
CP000583_21(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   291   1e-77
EU020476_1(EU020476|pid:none) Thulinius stephaniae clone Thul26f...   281   1e-74
T24140(T24140;T24684) hypothetical protein T08A11.2 - Caenorhabd...   275   6e-73
CU633899_368(CU633899|pid:none) Podospora anserina genomic DNA c...   274   1e-72
AM270010_46(AM270010|pid:none) Aspergillus niger contig An02c015...   273   2e-72
AP007159_186(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   272   6e-72
(Q10178) RecName: Full=U2 snRNP component prp10;  &CU329670_1789...   245   8e-64
AM910990_316(AM910990|pid:none) Plasmodium knowlesi strain H chr...   244   1e-63
CR382128_826(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   229   6e-59
AL844502_86(AL844502|pid:none) Plasmodium falciparum 3D7 chromos...   228   8e-59
CR940352_190(CR940352|pid:none) Theileria annulata strain Ankara...   227   2e-58
AY648823_1(AY648823|pid:none) Danio rerio splicing factor 3b sub...   210   3e-53
CU928166_369(CU928166|pid:none) Kluyveromyces thermotolerans str...   184   2e-45
(P49955) RecName: Full=U2 snRNP component HSH155;  &S54595(S5459...   179   7e-44
FN392320_440(FN392320|pid:none) Pichia pastoris GS115 chromosome...   176   6e-43
CR380959_586(CR380959|pid:none) Candida glabrata strain CBS138 c...   175   1e-42
CU928176_326(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   172   9e-42
CR716159_10(CR716159|pid:none) P. carinii cosmid 22C8.                159   6e-38
CR382121_395(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   159   6e-38
CP000498_298(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   157   2e-37
CR382139_916(CR382139|pid:none) Debaryomyces hansenii strain CBS...   149   8e-35
FM992691_283(FM992691|pid:none) Candida dubliniensis CD36 chromo...   144   2e-33
AM494965_279(AM494965|pid:none) Leishmania braziliensis chromoso...   132   6e-30
CT005266_268(CT005266|pid:none) Leishmania major strain Friedlin...   132   8e-30
AY895171_1(AY895171|pid:none) Trypanosoma cruzi sf3b complex sub...   116   4e-25
AX887362_1(AX887362|pid:none) Sequence 3225 from Patent EP1033401.     85   2e-15
AC122171_1(AC122171|pid:none) Medicago truncatula clone mth2-23b...    66   9e-10
AC125481_35(AC125481|pid:none) Medicago truncatula clone mth2-15...    46   7e-04
AF374376_33(AF374376|pid:none) Oikopleura dioica clone BAC clone...    45   0.002
AJ251130_1(AJ251130|pid:none) Xenopus laevis mRNA for Microtubul...    44   0.003
AC152347_15(AC152347|pid:none) Medicago truncatula clone mth2-28...    44   0.005
FN392322_517(FN392322|pid:none) Pichia pastoris GS115 chromosome...    41   0.031
(Q7TNP2) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    41   0.031
U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...    40   0.052
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...    40   0.068
AC011810_8(AC011810|pid:none) Arabidopsis thaliana chromosome I ...    39   0.12
(Q38951) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    39   0.12
AK161392_1(AK161392|pid:none) Mus musculus adult male testis cDN...    39   0.12
(Q09543) RecName: Full=Probable serine/threonine-protein phospha...    39   0.12
(Q4QQT4) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    39   0.15
S51809(S51809) phosphoprotein phosphatase 2A 65K regulatory chai...    38   0.20
BC172813_1(BC172813|pid:none) Synthetic construct Homo sapiens c...    38   0.20
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    38   0.20
S69215(S69215;S71203)phosphoprotein phosphatase (EC 3.1.3.16) 2A...    38   0.26
S51807(S51807;S76594)phosphoprotein phosphatase 2A 65K regulator...    38   0.26
CU928176_233(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    38   0.26
CR860766_1(CR860766|pid:none) Pongo abelii mRNA; cDNA DKFZp459F2...    37   0.34
AF274063_1(AF274063|pid:none) Xenopus laevis microtubule associa...    37   0.34
CR382138_1014(CR382138|pid:none) Debaryomyces hansenii strain CB...    37   0.44
AB168293_1(AB168293|pid:none) Macaca fascicularis testis cDNA cl...    37   0.44
A34541(A34541;A36180;E38351) phosphoprotein phosphatase 2-alpha ...    37   0.58
T03684(T03684) phosphoprotein phosphatase (EC 3.1.3.16) 2A regul...    37   0.58
AC024798_9(AC024798|pid:none) Caenorhabditis elegans cosmid Y48G...    37   0.58
(Q6DFV1) RecName: Full=Condensin-2 complex subunit G2; AltName: ...    36   0.76
BC008539_1(BC008539|pid:none) Mus musculus non-SMC condensin II ...    36   0.76
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...    36   0.99
AY940682_1(AY940682|pid:none) Zea mays protein phosphatase 2A re...    35   1.3
BT055991_1(BT055991|pid:none) Zea mays full-length cDNA clone ZM...    35   1.3
AK070395_1(AK070395|pid:none) Oryza sativa Japonica Group cDNA c...    35   1.3
M65254_1(M65254|pid:none) Protein phosphatase 2A 65 kDa regulato...    35   1.3
AK222057_1(AK222057|pid:none) Arabidopsis thaliana mRNA for phos...    35   1.3
AK088776_1(AK088776|pid:none) Mus musculus 2 days neonate thymus...    35   1.3
BC027596_1(BC027596|pid:none) Homo sapiens protein phosphatase 2...    35   1.3
AF196286_1(AF196286|pid:none) Medicago sativa subsp. x varia Ser...    35   1.3
AK292275_1(AK292275|pid:none) Homo sapiens cDNA FLJ76434 complet...    35   1.7
AM420293_4151(AM420293|pid:none) Saccharopolyspora erythraea NRR...    35   1.7
AK293388_1(AK293388|pid:none) Homo sapiens cDNA FLJ54667 complet...    35   1.7
(Q59ZX6) RecName: Full=U3 small nucleolar RNA-associated protein...    35   1.7
CP001106_381(CP001106|pid:none) Eubacterium eligens ATCC 27750 p...    35   1.7
CP000264_2858(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    35   2.2
(Q9UT08) RecName: Full=Protein phosphatase PP2A regulatory subun...    35   2.2
AK091387_1(AK091387|pid:none) Homo sapiens cDNA FLJ34068 fis, cl...    35   2.2
L05146_8(L05146|pid:none) Saccharomyces cerevisiae chromosome I ...    35   2.2
CP000743_959(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    35   2.2
M98389_1(M98389|pid:none) Yeast protein phosphatase regulatory s...    35   2.2
AK090488_1(AK090488|pid:none) Homo sapiens cDNA FLJ33169 fis, cl...    35   2.2
AE017353_214(AE017353|pid:none) Cryptococcus neoformans var. neo...    35   2.2
AY892682_1(AY892682|pid:none) Synthetic construct Homo sapiens c...    35   2.2
(P31383) RecName: Full=Protein phosphatase PP2A regulatory subun...    35   2.2
FJ667540_1(FJ667540|pid:none) Betula pendula protein phosphatase...    35   2.2
AK293174_1(AK293174|pid:none) Homo sapiens cDNA FLJ53296 complet...    35   2.2
BT085865_1(BT085865|pid:none) Zea mays full-length cDNA clone ZM...    35   2.2
(P30153) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    35   2.2
AB170499_1(AB170499|pid:none) Macaca fascicularis brain cDNA clo...    35   2.2
AK293493_1(AK293493|pid:none) Homo sapiens cDNA FLJ56053 complet...    35   2.2
CR450340_1(CR450340|pid:none) Homo sapiens full open reading fra...    35   2.2
BC075576_1(BC075576|pid:none) Xenopus tropicalis platelet-derive...    35   2.2
M31786_1(M31786|pid:none) Human medium tumor antigen-associated ...    35   2.2
PDBN(1B3U)A MOL_ID: 1;MOL_ID: 1; MOLECULE: PROTEIN PHOSPHATASE P...    35   2.2
BC161509_1(BC161509|pid:none) Xenopus tropicalis hypothetical pr...    34   2.9
BC052678_1(BC052678|pid:none) Mus musculus protein phosphatase 2...    34   2.9
(P54612) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    34   2.9
CP000386_665(CP000386|pid:none) Rubrobacter xylanophilus DSM 994...    34   2.9
BT030492_1(BT030492|pid:none) Bos taurus protein phosphatase 2 (...    34   2.9
BC096422_1(BC096422|pid:none) Mus musculus cytoskeleton associat...    34   3.8
(Q9CUN0) RecName: Full=Cytoskeleton-associated protein 5;  &AL69...    34   3.8
CP000081_411(CP000081|pid:none) Leishmania major chromosome 35, ...    34   3.8
BC138334_1(BC138334|pid:none) Mus musculus cytoskeleton associat...    34   3.8
AL691489_4(AL691489|pid:none) Mouse DNA sequence from clone RP23...    34   3.8
BC089032_1(BC089032|pid:none) Mus musculus cytoskeleton associat...    34   3.8
AK149854_1(AK149854|pid:none) Mus musculus bone marrow macrophag...    34   3.8
AP007164_306(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    34   3.8
(Q14008) RecName: Full=Cytoskeleton-associated protein 5; AltNam...    34   3.8
BC108103_1(BC108103|pid:none) Bos taurus protein phosphatase 2 (...    34   3.8
S68176(S68176) TOG protein - human  &X92474_1(X92474|pid:none)         34   3.8
AP008209_2460(AP008209|pid:none) Oryza sativa (japonica cultivar...    33   4.9
AF196287_1(AF196287|pid:none) Medicago sativa subsp. x varia Ser...    33   4.9
AE015928_987(AE015928|pid:none) Bacteroides thetaiotaomicron VPI...    33   4.9
CU928169_265(CU928169|pid:none) Kluyveromyces thermotolerans str...    33   4.9
AE014185_371(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.9
BA000045_3257(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    33   4.9
AC146936_30(AC146936|pid:none) Oryza sativa (japonica cultivar-g...    33   4.9
AE010300_2605(AE010300|pid:none) Leptospira interrogans serovar ...    33   6.4
CP000117_2551(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    33   6.4
AK048521_1(AK048521|pid:none) Mus musculus 16 days embryo head c...    33   6.4
(Q6A7P6) RecName: Full=Polyribonucleotide nucleotidyltransferase...    33   6.4
BC043624_1(BC043624|pid:none) Xenopus laevis phosphorylase phosp...    33   6.4
FN357723_12(FN357723|pid:none) Schistosoma mansoni genome sequen...    33   6.4
AJ131045_1(AJ131045|pid:none) Cicer arietinum mRNA for protein p...    33   6.4
BC050149_1(BC050149|pid:none) Mus musculus apolipoprotein A-IV, ...    33   6.4
(Q9JY06) RecName: Full=Probable O-sialoglycoprotein endopeptidas...    33   8.4
AK290593_1(AK290593|pid:none) Homo sapiens cDNA FLJ77680 complet...    33   8.4
(A1IQ95) RecName: Full=Probable O-sialoglycoprotein endopeptidas...    33   8.4
CR382132_33(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    33   8.4
AL137410_1(AL137410|pid:none) Homo sapiens mRNA; cDNA DKFZp434M0...    33   8.4
(P06728) RecName: Full=Apolipoprotein A-IV;          Short=Apo-A...    33   8.4
AK161535_1(AK161535|pid:none) Mus musculus 11 days pregnant adul...    33   8.4
(A1KS96) RecName: Full=Probable O-sialoglycoprotein endopeptidas...    33   8.4
B40892(B40892) apolipoprotein A-IV precursor - mouse (strain 129...    33   8.4
CP000076_716(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co...    33   8.4
S65952(S65952;S72499)[phosphorylase] phosphatase (EC 3.1.3.17) b...    33   8.4
BC078080_1(BC078080|pid:none) Xenopus laevis protein phosphatase...    33   8.4
AM442987_1(AM442987|pid:none) Vitis vinifera contig VV78X078696....    33   8.4
A25281(A25281) apolipoprotein A-IV precursor - mouse  &M13966_1(...    33   8.4
S65953(S65953;I51631) [phosphorylase] phosphatase (EC 3.1.3.17) ...    33   8.4
M64250_1(M64250|pid:none) Mouse apolipoprotein A-IV (apoa-4) mRN...    33   8.4
AE016823_1341(AE016823|pid:none) Leptospira interrogans serovar ...    33   8.4

>AP008208_305(AP008208|pid:none) Oryza sativa (japonica
            cultivar-group) genomic DNA, chromosome 2.
          Length = 1158

 Score =  313 bits (803), Expect = 2e-84
 Identities = 156/202 (77%), Positives = 176/202 (87%)
 Frame = +3

Query: 3    REEIIPEFFKQFWVRRMALDKRNYKLLVETTLEIANKVGGGEIIERIVDDLKDESEAYRR 182
            R +I+PEFF+ FWVRRMALD+RNYK LVETT+E+ANKVG  +I+ RIV+DLKDESE YRR
Sbjct: 660  RNDILPEFFRHFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRR 719

Query: 183  MVMEAIEKIVSTLGASDISPTLEERLIDGILYAFQEQTTDETSIMLQGFGTVVLALNTRI 362
            MVME IEK+V+ LGASDI   LEE LIDGILYAFQEQT+D+ ++ML GFG VV AL  R+
Sbjct: 720  MVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRV 779

Query: 363  QPYLQQIAGTIKWRLNNKSAKVRQQAADLISRIAVVMMNCGEEQLLSHLGQILYEYLGEE 542
            +PYL QI GTIKWRLNNKSAKVRQQAADLISRIA+VM  C EEQL+ HLG +LYEYLGEE
Sbjct: 780  KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEE 839

Query: 543  YPEVLGSILGALKAIVNVIGMT 608
            YPEVLGSILGALKAIVNVIGMT
Sbjct: 840  YPEVLGSILGALKAIVNVIGMT 861

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,047,311,714
Number of extensions: 21122393
Number of successful extensions: 57203
Number of sequences better than 10.0: 149
Number of HSP's gapped: 57142
Number of HSP's successfully gapped: 153
Length of query: 206
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 83
Effective length of database: 653,084,107
Effective search space: 54205980881
Effective search space used: 54205980881
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.31  top: 0.87  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U12949-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0