NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12926-1
Contig ID Contig-U12926-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Contig-U12926-1Q.Seq.d
ACCAGCAATTATAATAATTTACAACAACAACAACCACCAATAGTAGTTGA
AGATATTTATATAAACCAATCATGGTTCGATTATTTTTCAAGTAGAATTC
AATACAAAAAGTTCTAATCGTTGTTTATTTAAAGTCAAAAGGTTCAAAAA
AAATGTTATGGATGATTTATTAAATACAAAGAATAGTTTTGGTGGTAAAG
GTAAAGAATCATCCAATTCAAATAATTTATTTAAAAAAGTTAAAATCAAT
GAATTTGAGGAAGAAAATCTTCTTTTTAAACCACAACAACCACAACAACA
ACAAGCTTCATCTTCAAAGTAAAACCTTATTGGATAATAGCGAAGAAATT
TTAAGGGTTGACGATGAAAATGATGATTCAGTTTTGAGATATAGATATGA
AAAAGATTTCATCCTTCTAAAAGATAATAAACCACTCATTATTTCACTTT
CACCAGATTGGGGTATACCCTTCCATACAAAAGAAGTAATTGACACTTCA
CCAACTCCAATTCCATTACCTCAAGTATTCAGTGCTGGTAGTAATAATAC
TAATAGTAACAACAATAATAAAAATAATAATAGAAATAAAGTAAATACCA
ATAATAATAATATCAATAATAATAATAATTCATCAAGATCCTCAAAGAAT
AACAACGGTAATAAAAAAGATAGGAAGGTAATCATGGTGNGAATTATGTA
CTACTCGCAAA
Gap no gap
Contig length 711
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2433189
End point 2432473
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 7
Link to clone list U12926
List of clone(s) 

est1=CFI776Z,1,593
est2=VFC346Z,7,412
est3=CFF807Z,25,537
est4=CFB586Z,82,643
est5=CFG140Z,132,712
est6=CHA630Z,148,627
est7=AFD780Z,174,624
Translated Amino Acid sequence 
qql**fttttttnss*rylykpimvrlffk*nsiqkvlivvylkskgskkmlwmiy*IQR
IVLVVKVKNHPIQIIYLKKLKSMNLRKKIFFLNHNNHNNNKLHLQSKTLLDNSEEILRVD
DENDDSVLRYRYEKDFILLKDNKPLIISLSPDWGIPFHTKEVIDTSPTPIPLPQVFSAGS
NNTNSNNNNKNNNRNKVNTNNNNINNNNNSSRSSKNNNGNKKDRKVIMVXIMYYSQ
Translated Amino Acid sequence (All Frames) 
Frame A:
tsnynnlqqqqppivvediyinqswfdyfssriqykkf*slfi*sqkvqkkcyg*fikyk
e*fww*r*riiqfk*fi*ks*nq*i*grkssf*ttttttttsfifkvkpywiiakkf*gl
tmkmmiqf*didmkkissf*kiinhslfhfhqigvypsiqkk*ltlhqlqfhylkysvlv
viilivttiikiiieik*ipiiiisiiiiihqdpqrittvikkigr*swxelcttrk


Frame B:
paiiiiynnnnhq**lkifi*tnhgsiifqvefntkssnrclfkvkrfkknvmddllntk
nsfggkgkessnsnnlfkkvkinefeeenllfkpqqpqqqqasssk*nlig**rrnfkg*
r*k**fsfei*i*krfhpskr**tthyftftrlgytlpykrsn*hftnsnsitssiqcw*
**y***qq**k***k*skyq***yq****fikilke*qr**kr*egnhgxnyvlla


Frame C:
qql**fttttttnss*rylykpimvrlffk*nsiqkvlivvylkskgskkmlwmiy*IQR
IVLVVKVKNHPIQIIYLKKLKSMNLRKKIFFLNHNNHNNNKLHLQSKTLLDNSEEILRVD
DENDDSVLRYRYEKDFILLKDNKPLIISLSPDWGIPFHTKEVIDTSPTPIPLPQVFSAGS
NNTNSNNNNKNNNRNKVNTNNNNINNNNNSSRSSKNNNGNKKDRKVIMVXIMYYSQ
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12926-1 (Contig-U12926-1Q)
/CSM_Contig/Contig-U12926-1Q.Seq.d
         (711 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Conti...   511  e-145
Contig-U12305-1 (Contig-U12305-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U10637-1 (Contig-U10637-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U10257-1 (Contig-U10257-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U02501-1 (Contig-U02501-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U13858-1 (Contig-U13858-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12582-1 (Contig-U12582-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10297-1 (Contig-U10297-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Contig-U12926-1Q.Seq.d
          Length = 711

 Score =  511 bits (258), Expect = e-145
 Identities = 274/282 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagcaattataataatttacaacaacaacaaccaccaatagtagttgaagatatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   accagcaattataataatttacaacaacaacaaccaccaatagtagttgaagatatttat 60

                                                                       
Query: 61  ataaaccaatcatggttcgattatttttcaagtagaattcaatacaaaaagttctaatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataaaccaatcatggttcgattatttttcaagtagaattcaatacaaaaagttctaatcg 120

                                                                       
Query: 121 ttgtttatttaaagtcaaaaggttcnnnnnnnntgttatggatgatttattaaatacaaa 180
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 121 ttgtttatttaaagtcaaaaggttcaaaaaaaatgttatggatgatttattaaatacaaa 180

                                                                       
Query: 181 gaatagttttggtggtaaaggtaaagaatcatccaattcaaataatttatttaaaaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatagttttggtggtaaaggtaaagaatcatccaattcaaataatttatttaaaaaagt 240

                                                     
Query: 241 taaaatcaatgaatttgaggaagaaaatcttctttttaaacc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaaatcaatgaatttgaggaagaaaatcttctttttaaacc 282


 Score =  468 bits (236), Expect = e-132
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                       
Query: 305 gcttcatcttcaaagtaaaaccttattggataatagcgaagaaattttaagggttgacga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcttcatcttcaaagtaaaaccttattggataatagcgaagaaattttaagggttgacga 364

                                                                       
Query: 365 tgaaaatgatgattcagttttgagatatagatatgaaaaagatttcatccttctaaaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgaaaatgatgattcagttttgagatatagatatgaaaaagatttcatccttctaaaaga 424

                                                                       
Query: 425 taataaaccactcattatttcactttcaccagattggggtatacccttccatacaaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taataaaccactcattatttcactttcaccagattggggtatacccttccatacaaaaga 484

                                                                   
Query: 485 agtaattgacacttcaccaactccaattccattacctcaagtattcagtgctggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtaattgacacttcaccaactccaattccattacctcaagtattcagtgctggta 540


 Score =  157 bits (79), Expect = 2e-38
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                       
Query: 630 tcatcaagatcctcaaagaataacaacggtaataaaaaagataggaaggtaatcatggtg 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tcatcaagatcctcaaagaataacaacggtaataaaaaagataggaaggtaatcatggtg 689

                                 
Query: 690 ngaattatgtactactcgcaaa 711
           ||||||||||||||||||||||
Sbjct: 690 ngaattatgtactactcgcaaa 711


>Contig-U12305-1 (Contig-U12305-1Q) /CSM_Contig/Contig-U12305-1Q.Seq.d
          Length = 1738

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 13  aataatttacaacaacaacaaccac 37
           ||||||||| |||||||||||||||
Sbjct: 229 aataatttaaaacaacaacaaccac 253


 Score = 30.2 bits (15), Expect = 3.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 20  tacaacaacaacaac 34
           |||||||||||||||
Sbjct: 321 tacaacaacaacaac 335


>Contig-U10637-1 (Contig-U10637-1Q) /CSM_Contig/Contig-U10637-1Q.Seq.d
          Length = 464

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 acaacaacaacaaccaccaat 41
          |||||||||||||||||||||
Sbjct: 59 acaacaacaacaaccaccaat 79


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,796
Number of Sequences: 6905
Number of extensions: 19796
Number of successful extensions: 6663
Number of sequences better than 10.0: 541
length of query: 711
length of database: 5,674,871
effective HSP length: 16
effective length of query: 695
effective length of database: 5,564,391
effective search space: 3867251745
effective search space used: 3867251745
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 4
Homology vs DNA 
Query= Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Contig-U12926-1Q.Seq.d
         (711 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ375470) Dictyostelium discoideum cDNA clone:ddc18h19, 3' ...   446   0.0    4
(BJ372335) Dictyostelium discoideum cDNA clone:ddc12n02, 3' ...   438   0.0    4
(BJ372627) Dictyostelium discoideum cDNA clone:ddc13o09, 3' ...   470   0.0    4
(BJ373763) Dictyostelium discoideum cDNA clone:ddc4k21, 3' e...   438   0.0    3
(BJ429925) Dictyostelium discoideum cDNA clone:ddv5l11, 3' e...   256   0.0    4
(BJ341968) Dictyostelium discoideum cDNA clone:dda8p19, 3' e...   446   e-178  2
(BJ377292) Dictyostelium discoideum cDNA clone:ddc23k08, 3' ...   400   e-167  2
(CX520085) s13dNF54E12VI099_444222 Virus-Infected Leaves Med...    54   0.007  1
(EK371128) 1095469417242 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.022  2
(AL238306) Tetraodon nigroviridis genome survey sequence PUC...    38   0.025  2
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.049  12
(DD010736) Diagnosis of known genetic Parameters within the ...    50   0.11   1
(AX344564) Sequence 15 from Patent WO0200932.                      50   0.11   1
(EJ979803) 1093022145941 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.11   1
(EJ966604) 1093022047620 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.11   1
(AP007331) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   0.13   6
(AL032657) Caenorhabditis elegans YAC Y47H9C.                      34   0.27   2
(EK214283) 1095460111042 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.33   2
(EK103744) 1092963035302 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.33   2
(EK098069) 1092962053502 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.33   2
(BX682529) Zebrafish DNA sequence from clone CH211-194P13 in...    48   0.45   1
(AC152176) Medicago truncatula clone mth2-65c4, complete seq...    48   0.45   1
(AC189734) Trichinella spiralis BAC clone TS195-20H12 from c...    48   0.45   1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    48   0.45   1
(BX571967) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.45   1
(CR343681) mte1-76N24RM1 BAC end, cultivar Jemalong A17 of M...    48   0.45   1
(CR343637) mte1-76L4RM1 BAC end, cultivar Jemalong A17 of Me...    48   0.45   1
(CR324951) mte1-52E18RM1 BAC end, cultivar Jemalong A17 of M...    48   0.45   1
(CR320982) mte1-47K4RM1 BAC end, cultivar Jemalong A17 of Me...    48   0.45   1
(CR301883) mte1-20G15FM1 BAC end, cultivar Jemalong A17 of M...    48   0.45   1
(EE663602) 010926ABDA002883HT (ABDA) Royal Gala fruit stored...    48   0.45   1
(CF350488) rl59e03.y1 Meloidogyne javanica J2 SMART pGEM Mel...    48   0.45   1
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    48   0.45   1
(AC183167) Bos taurus clone CH240-103A6, WORKING DRAFT SEQUE...    44   0.48   4
(AU269798) Dictyostelium discoideum vegetative cDNA clone:VS...    38   0.58   2
(AM433721) Vitis vinifera contig VV78X233805.4, whole genome...    36   0.60   4
(CU467867) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   0.71   6
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   0.74   8
(BJ323551) Dictyostelium discoideum cDNA clone:dda11j06, 5' ...    38   0.77   2
(AC163188) Bos taurus clone CH240-125O20, WORKING DRAFT SEQU...    44   0.77   4
(BJ417634) Dictyostelium discoideum cDNA clone:ddv28d07, 5' ...    38   0.77   2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.81   8
(BJ425804) Dictyostelium discoideum cDNA clone:ddv56l20, 5' ...    38   0.81   2
(BJ335953) Dictyostelium discoideum cDNA clone:dda52n01, 5' ...    38   0.81   2
(BJ367120) Dictyostelium discoideum cDNA clone:ddc41o09, 5' ...    38   0.82   2
(BJ366823) Dictyostelium discoideum cDNA clone:ddc40j10, 5' ...    38   0.84   2
(CR382336) Zebrafish DNA sequence from clone CH211-125A6 in ...    36   0.86   5
(AP010280) Lotus japonicus genomic DNA, chromosome 2, clone:...    34   0.90   3
(BJ325374) Dictyostelium discoideum cDNA clone:dda14j02, 5' ...    38   0.98   2
(AC149129) Medicago truncatula chromosome 7 clone mth2-139m1...    46   1.1    3
(CZ540393) SRAA-aad31f04.b1 Strongyloides ratti whole genome...    34   1.2    2
(FF431419) G142P60133RC5.T0 Acorn worm juvenile pCMVSport6 l...    36   1.3    2
(BX510657) Zebrafish DNA sequence from clone CH211-142K18 in...    46   1.8    1
(BV368112) S231P6181FC5.T0 BedlingtonTerrier Canis familiari...    46   1.8    1
(CR936947) Medicago truncatula chromosome 5 clone mte1-85h10...    46   1.8    1
(AY247011) Diaeretiella rapae microsatellite dr271 sequence.       46   1.8    1
(CU137707) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(ER558863) 1093015733783 Global-Ocean-Sampling_GS-36-01-01-2...    46   1.8    1
(ER318515) 1092344160965 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.8    1
(EK333304) 1095467032191 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK118299) 1092963276069 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK115757) 1092963238701 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK054710) 1092960007599 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EJ663129) 1092955031852 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.8    1
(EJ649647) 1092953006241 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.8    1
(EJ616689) 1092963023824 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.8    1
(EJ422972) 1093012242377 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.8    1
(EJ354628) 1092963625915 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.8    1
(EJ209381) 1092345408394 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.8    1
(EJ134594) 1092343590530 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.8    1
(EJ098931) 1095462344260 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.8    1
(CR320057) mte1-46C19FM1 BAC end, cultivar Jemalong A17 of M...    46   1.8    1
(DT595474) she01-4ms1-f06 She01 Saruma henryi cDNA clone she...    46   1.8    1
(AV316961) Mus musculus adult male thymus cDNA, RIKEN full-l...    46   1.8    1
(CX036787) 1349599 NCCCWA 10RT#3 Oncorhynchus mykiss cDNA cl...    46   1.8    1
(CU072104) AGENAE Rainbow trout multi-tissues library (tcce)...    46   1.8    1
(AL376067) Medicago truncatula EST MtBB21A04R1 : T7 end of c...    46   1.8    1
(CA917478) EST641625 GPOD Medicago truncatula cDNA clone GPO...    46   1.8    1
(CA197088) SCBFAD1096B10.g AD1 Saccharum officinarum cDNA cl...    46   1.8    1
(BM880344) rb21c05.y1 Meloidogyne incognita egg pAMP1 Bird M...    46   1.8    1
(BG589099) EST490908 MHRP- Medicago truncatula cDNA clone pM...    46   1.8    1
(AW981212) EST392302 DSIL Medicago truncatula cDNA clone pDS...    46   1.8    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   2.1    5
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    32   2.7    6
(AC145973) Gallus gallus BAC clone CH261-2E2 from chromosome...    38   2.8    3
(EU255904) Lactococcus lactis subsp. lactis clone n346 genom...    36   3.0    3
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    36   3.1    4
(CX574644) TTE00032085 Amplicon Express - Conjugative Form T...    38   3.4    2
(CV541676) RTS_108_G05 Phaseolus vulgaris P- root EST librar...    38   3.5    2
(AP009868) Lotus japonicus genomic DNA, clone: LjB06N21, BM2...    32   3.6    2
(CX579222) TTE00031085 Amplicon Express - Conjugative Form T...    38   3.7    2
(EB644701) AGENCOURT_77440206 NICHD_XGC_thy Xenopus laevis c...    38   3.8    2
(BH572429) BOHBE46TR BOHB Brassica oleracea genomic clone BO...    38   3.8    2
(BH705355) BOMPO74TR BO_2_3_KB Brassica oleracea genomic clo...    38   3.9    2
(AC154248) Mus musculus BAC clone RP24-182I14 from chromosom...    36   3.9    4
(AC139574) Mus musculus BAC clone RP23-477I8 from chromosome...    38   4.0    4
(FF574797) TTEF283THC Tetrahymena thermophila conjugation cD...    38   4.1    2
(AC127018) Medicago truncatula chromosome 8 clone mth2-8a13,...    38   4.3    5
(EJ113346) 1092343181556 Global-Ocean-Sampling_GS-27-01-01-1...    34   4.6    2
(EJ164513) 1092344060411 Global-Ocean-Sampling_GS-27-01-01-1...    34   4.6    2

>(BJ375470) Dictyostelium discoideum cDNA clone:ddc18h19, 3' end,
           single read.
          Length = 591

 Score =  446 bits (225), Expect(4) = 0.0
 Identities = 225/225 (100%)
 Strand = Plus / Minus


Query: 317 aagtaaaaccttattggataatagcgaagaaattttaagggttgacgatgaaaatgatga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aagtaaaaccttattggataatagcgaagaaattttaagggttgacgatgaaaatgatga 218


Query: 377 ttcagttttgagatatagatatgaaaaagatttcatccttctaaaagataataaaccact 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttcagttttgagatatagatatgaaaaagatttcatccttctaaaagataataaaccact 158


Query: 437 cattatttcactttcaccagattggggtatacccttccatacaaaagaagtaattgacac 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cattatttcactttcaccagattggggtatacccttccatacaaaagaagtaattgacac 98


Query: 497 ttcaccaactccaattccattacctcaagtattcagtgctggtag 541
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ttcaccaactccaattccattacctcaagtattcagtgctggtag 53

 Score =  256 bits (129), Expect(4) = 0.0
 Identities = 129/129 (100%)
 Strand = Plus / Minus


Query: 154 tgttatggatgatttattaaatacaaagaatagttttggtggtaaaggtaaagaatcatc 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgttatggatgatttattaaatacaaagaatagttttggtggtaaaggtaaagaatcatc 380


Query: 214 caattcaaataatttatttaaaaaagttaaaatcaatgaatttgaggaagaaaatcttct 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caattcaaataatttatttaaaaaagttaaaatcaatgaatttgaggaagaaaatcttct 320


Query: 274 ttttaaacc 282
           |||||||||
Sbjct: 319 ttttaaacc 311

 Score =  216 bits (109), Expect(4) = 0.0
 Identities = 109/109 (100%)
 Strand = Plus / Minus


Query: 1   accagcaattataataatttacaacaacaacaaccaccaatagtagttgaagatatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 accagcaattataataatttacaacaacaacaaccaccaatagtagttgaagatatttat 532


Query: 61  ataaaccaatcatggttcgattatttttcaagtagaattcaatacaaaa 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ataaaccaatcatggttcgattatttttcaagtagaattcaatacaaaa 483

 Score = 77.8 bits (39), Expect(4) = 0.0
 Identities = 39/39 (100%)
 Strand = Plus / Minus


Query: 107 aaaagttctaatcgttgtttatttaaagtcaaaaggttc 145
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaaagttctaatcgttgtttatttaaagtcaaaaggttc 448

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 845,607,996
Number of extensions: 58606933
Number of successful extensions: 6802165
Number of sequences better than 10.0: 193
Length of query: 711
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 687
Effective length of database: 97,308,875,965
Effective search space: 66851197787955
Effective search space used: 66851197787955
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Contig-U12926-1Q.Seq.d
         (711 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF193903_21(AF193903|pid:none) Cafeteria roenbergensis mitochond...    35   2.3
T14275(T14275) myosin-like protein my1 - common sunflower  &U947...    33   6.6
CP000383_2907(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    33   8.6
CP000724_3751(CP000724|pid:none) Alkaliphilus metalliredigens QY...    33   8.6
AE014185_77(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    33   8.6
AL844508_246(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   8.6

>AF193903_21(AF193903|pid:none) Cafeteria roenbergensis
           mitochondrial DNA, complete genome.
          Length = 805

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 207 SLPLPPKLFFVFNKSSITFFLNLLTLNKQRLE--LFVLNST*KIIEP*LVYINIFN 46
           S+ L      V+N+ S T FLNLL +N    E   F +NS    IE  L++++IFN
Sbjct: 164 SIFLALSFILVYNQFSTTTFLNLLLINLNFFEEQFFSMNSASFFIENNLIFLSIFN 219

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 814,783,279
Number of extensions: 12909873
Number of successful extensions: 42071
Number of sequences better than 10.0: 6
Number of HSP's gapped: 42046
Number of HSP's successfully gapped: 6
Length of query: 237
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 112
Effective length of database: 646,610,989
Effective search space: 72420430768
Effective search space used: 72420430768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.80  gvh: 0.24  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for Contig-U12926-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0