NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12920-1
Contig ID Contig-U12920-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Contig-U12920-1Q.Seq.d
GGTACCTCCAATTGTTTTAGATGAACAAGGTGACGTAGTTACAGGACCAT
TGCCAGCATATGATGCTTCAATAGCGCATGCACTTACTCATTTGAATGCT
ACCACTGAAACCGCATCAACAATAAATGAATTTATTGCTCTACAATTAAA
TAATGCTGAAGATAGTGATTTTGAAGATGGTGATAATAGTAATATAAAAC
TAAGAAATTTTAAAAATAATCAATTAAAACAAAAACAAATCAATAATAAT
AATAATAATAATAATGATAATAAAAATAATAGTAATAGGGGCTGTGGAAG
TAATAATAATAATAATAATAATAATAATAATAAAAATAAAAATAATTCAA
GTAATAGTACAAATAATGGTTGTAGTAGCAGTAATAATGGAAATAAAGTT
GAATGTGATGGATGTGATCCTGATAATATTAAAACACTAAAAAGTAAAGA
TTATTATATAAAATCATATATAAAAATAAAAGACGAACTTTCAAATAGAA
TGACGATAGTAAAAGTTCAAGAACAACATCAAAAGAAAATTAAAAATATT
TCAATCTCATCAAAACTAATGTTTTATACATTATTTTCAAGACCAAGTGA
ATGGTTTTCAGTATTATTTTTAATATTATTCACTTTATTAATTGGATTAA
AATTGGATAATTACTTGAATTGGAGTTGGCCAATAGTTTTCCTTCCATTA
ATGCTATTAACGTTTCAATTTTTTGTAACTCCTTTAATATTTGTTATTTT
TAAAGTAATGTTTAATCATTCATATGAAGAAGAATTAGCACCAGATTCAT
TTATAAAACCATTATTTTTTTCATTATTTTTTATATTACCATTACAACCA
AATGAAACCATATCAAAAGTATTATTATTTACTCCAATTTTATGTATGAT
TTCATTTGTGGTATTATTAGTTTCAAAATTAATGATGGAATATATTTCAT
GGGTTTATGTGTTTATTCCCATTTTTATGTTTTGTATTTACTTTATGATT
CTTACTGTTGGATTTCCAGAAAGAATTGATTCAGAATTAGAATTTCTCGA
TCAAGGTACATTAATTTTTAGCTCAATGTTTTTTAGTTTTTTTATTTTAC
TATTATTTTTAAAGGTTGGAGAGGCAGTTAATTACGATTGGTATTTAATA
TTTTCACCAATGTTTTTAATTAAACTTATGGCATTGATATATCCAATTAT
TATTAGAATCACTAGTGTTTCAAAATATTCAGACTGGTTAGAAGGAAAAT
CCAAATGGTTCAGAGAATCTGGCTCTTTTGTCGTTGGTTATTTCTTTCTT
TTTTTTAGTATCATGCCCATTCTTTGTTTTTGAAATAATGTTAATTCAGA
ATTTAAATTTTCCAAATGATGCCTATAAATATTCAATTATTTTAATACCA
ATTTATTTTGTCCAATTCCTTACAATTTGTTCTTGCTTTTTTATTAATAT
TGCATTTGGGCATAGGGATCAATAATTGGGATTGGAATTTTAATCATAGG
GTTATTTACAACTGTTGTTCTTCTGCCATAATTTCAAAATTATTTTGGGA
AGCTCATCCTCAAACTGTGGAAAAACTAATAATAAAATAAAAAAAAATAA
TAAAAAAAAAAAGAAAAAGATTTTTTAATAATTAAAATAATAAAAAAAAA
AAATAATAATAAAATAATTTCTTTTCTACTTTG
Gap no gap
Contig length 1683
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5428299
End point 5429982
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 6
Link to clone list U12920
List of clone(s) 

est1=SSH561F,1,408
est2=CFH328F,140,713
est3=CHA460F,597,1034
est4=CFH328Z,858,1320
est5=SSH561Z,1144,1602
est6=SSD524Z,1290,1683
Translated Amino Acid sequence 
VPPIVLDEQGDVVTGPLPAYDASIAHALTHLNATTETASTINEFIALQLNNAEDSDFEDG
DNSNIKLRNFKNNQLKQKQINNNNNNNNDNKNNSNRGCGSNNNNNNNNNNKNKNNSSNST
NNGCSSSNNGNKVECDGCDPDNIKTLKSKDYYIKSYIKIKDELSNRMTIVKVQEQHQKKI
KNISISSKLMFYTLFSRPSEWFSVLFLILFTLLIGLKLDNYLNWSWPIVFLPLMLLTFQF
FVTPLIFVIFKVMFNHSYEEELAPDSFIKPLFFSLFFILPLQPNETISKVLLFTPILCMI
SFVVLLVSKLMMEYISWVYVFIPIFMFCIYFMILTVGFPERIDSELEFLDQGTLIFSSMF
FSFFILLLFLKVGEAVNYDWYLIFSPMFLIKLMALIYPIIIRITSVSKYSDWLEGKSKWF
RESGSFVVGYFFLFFSIMPILCF*nnvnsefkfsk*cl*ifnyfntnlfcpipynlfllf
y*yciwa*gsiigigiliiglfttvvllp*fqnyfgklilklwkn***nkkk**kkkekd
fliikiikkknnnkiisfll
Translated Amino Acid sequence (All Frames) 
Frame A:
gtsncfr*tr*rsyrtiasi*cfnsactysfecyh*nrinnk*iycstik*c*r**f*rw
****yktkkf*k*siktktnq**********k****glwk***********k*k*fk**y
k*wl**q**wk*s*m*wm*s**y*ntkk*rllykiiyknkrrtfk*nddskssrttsken
*kyfnliktnvlyiifktk*mvfsiifniihfinwikig*llelelansfpsinainvsi
fcnsfnicyf*snv*sfi*rristrfiyktiiffiifyitittk*nhiksiiiysnfmyd
ficgiisfkindgiyfmglcvyshfyvlyllydsycwisrkn*fririsrsryinf*lnv
f*ffyftiifkgwrgs*lrlvfniftnvfn*tygidisnyy*nh*cfkifrlvrrkiqmv
qriwlfcrwlflsff*yhahslflk*c*fri*ifqmmpiniqlf*yqfilsnslqfvlaf
llilhlgiginnwdwnfnhrviynccssaiisklfweahpqtvekliik*kkiikkkrkr
ffnn*nnkkkk***nnffstl


Frame B:
VPPIVLDEQGDVVTGPLPAYDASIAHALTHLNATTETASTINEFIALQLNNAEDSDFEDG
DNSNIKLRNFKNNQLKQKQINNNNNNNNDNKNNSNRGCGSNNNNNNNNNNKNKNNSSNST
NNGCSSSNNGNKVECDGCDPDNIKTLKSKDYYIKSYIKIKDELSNRMTIVKVQEQHQKKI
KNISISSKLMFYTLFSRPSEWFSVLFLILFTLLIGLKLDNYLNWSWPIVFLPLMLLTFQF
FVTPLIFVIFKVMFNHSYEEELAPDSFIKPLFFSLFFILPLQPNETISKVLLFTPILCMI
SFVVLLVSKLMMEYISWVYVFIPIFMFCIYFMILTVGFPERIDSELEFLDQGTLIFSSMF
FSFFILLLFLKVGEAVNYDWYLIFSPMFLIKLMALIYPIIIRITSVSKYSDWLEGKSKWF
RESGSFVVGYFFLFFSIMPILCF*nnvnsefkfsk*cl*ifnyfntnlfcpipynlfllf
y*yciwa*gsiigigiliiglfttvvllp*fqnyfgklilklwkn***nkkk**kkkekd
fliikiikkknnnkiisfll


Frame C:
ylqlf*mnkvt*lqdhcqhmmlq*rmhlli*mlplkphqq*mnlllyn*imlkivilkmv
iivi*n*eilkiin*nknksiiiiiiimiikiivigaveviiiiiiiiiikikiiqvivq
imvvvavimeiklnvmdviliilkh*kvkiii*nhi*k*ktnfqie*r**kfknnikrkl
kifqshqn*cfihyfqdqvngfqyyf*yysly*ld*nwiit*igvgq*fsfh*cy*rfnf
l*ll*yllflk*cliihmkkn*hqihl*nhyffhyflyyhynqmkpyqkyyyllqfyv*f
hlwyy*fqn**wnifhgfmclfpflcfvftl*fllldfqkeliqn*nfsikvh*flaqcf
lvflfyyyf*rlerqlitigi*yfhqcf*lnlwh*yiqllleslvfqniqtg*kenpngs
enlallslvisffflvscpffvfeimliqnlnfpndaykysiilipiyfvqflticscff
iniafghrdq*lglef*s*gylqllffchnfkiilgssssncgktnnkikknnkkkkkki
f**lk**kkkiiik*flfyf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12920-1 (Contig-U12920-1Q)
/CSM_Contig/Contig-U12920-1Q.Seq.d
         (1683 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Conti...  1409  0.0
Contig-U07860-1 (Contig-U07860-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U14392-1 (Contig-U14392-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U14131-1 (Contig-U14131-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U12346-1 (Contig-U12346-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U12170-1 (Contig-U12170-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U12545-1 (Contig-U12545-1Q) /CSM_Contig/Conti...    30  7.4

>Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Contig-U12920-1Q.Seq.d
          Length = 1683

 Score = 1409 bits (711), Expect = 0.0
 Identities = 725/732 (99%)
 Strand = Plus / Plus

                                                                        
Query: 347  tcaagtaatagtacaaataatggttgtagtagcagtaataatggaaataaagttgaatgt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347  tcaagtaatagtacaaataatggttgtagtagcagtaataatggaaataaagttgaatgt 406

                                                                        
Query: 407  gatggatgtgatcctgataatattaaaacactaaaaagtaaagattattatataaaatca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  gatggatgtgatcctgataatattaaaacactaaaaagtaaagattattatataaaatca 466

                                                                        
Query: 467  tatataaaaataaaagacgaactttcaaatagaatgacgatagtaaaagttcaagaacaa 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  tatataaaaataaaagacgaactttcaaatagaatgacgatagtaaaagttcaagaacaa 526

                                                                        
Query: 527  catcaaaagaaaattaaaaatatttcaatctcatcaaaactaatgttttatacattattt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  catcaaaagaaaattaaaaatatttcaatctcatcaaaactaatgttttatacattattt 586

                                                                        
Query: 587  tcaagaccaagtgaatggttttcagtattatttttaatattattcactttattaattgga 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  tcaagaccaagtgaatggttttcagtattatttttaatattattcactttattaattgga 646

                                                                        
Query: 647  ttaaaattggataattacttgaattggagttggccaatagttttccttccattaatgcta 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  ttaaaattggataattacttgaattggagttggccaatagttttccttccattaatgcta 706

                                                                        
Query: 707  ttaacgtttcaattttttgtaactcctttaatatttgttatttttaaagtaatgtttaat 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ttaacgtttcaattttttgtaactcctttaatatttgttatttttaaagtaatgtttaat 766

                                                                        
Query: 767  cattcatatgaagaagaattagcaccagattcatttataaaaccattannnnnnncatta 826
            ||||||||||||||||||||||||||||||||||||||||||||||||       |||||
Sbjct: 767  cattcatatgaagaagaattagcaccagattcatttataaaaccattatttttttcatta 826

                                                                        
Query: 827  ttttttatattaccattacaaccaaatgaaaccatatcaaaagtattattatttactcca 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  ttttttatattaccattacaaccaaatgaaaccatatcaaaagtattattatttactcca 886

                                                                        
Query: 887  attttatgtatgatttcatttgtggtattattagtttcaaaattaatgatggaatatatt 946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  attttatgtatgatttcatttgtggtattattagtttcaaaattaatgatggaatatatt 946

                                                                        
Query: 947  tcatgggtttatgtgtttattcccatttttatgttttgtatttactttatgattcttact 1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  tcatgggtttatgtgtttattcccatttttatgttttgtatttactttatgattcttact 1006

                                                                        
Query: 1007 gttggatttccagaaagaattgattcagaattagaatttctcgatcaaggtacattaatt 1066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gttggatttccagaaagaattgattcagaattagaatttctcgatcaaggtacattaatt 1066

                        
Query: 1067 tttagctcaatg 1078
            ||||||||||||
Sbjct: 1067 tttagctcaatg 1078


 Score =  864 bits (436), Expect = 0.0
 Identities = 452/460 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1111 aaaggttggagaggcagttaattacgattggtatttaatattttcaccaatgtttttaat 1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 aaaggttggagaggcagttaattacgattggtatttaatattttcaccaatgtttttaat 1170

                                                                        
Query: 1171 taaacttatggcattgatatatccaattattattagaatcactagtgtttcaaaatattc 1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 taaacttatggcattgatatatccaattattattagaatcactagtgtttcaaaatattc 1230

                                                                        
Query: 1231 agactggttagaaggaaaatccaaatggttcagagaatctggctcttttgtcgttggtta 1290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 agactggttagaaggaaaatccaaatggttcagagaatctggctcttttgtcgttggtta 1290

                                                                        
Query: 1291 tttctttcnnnnnnnnagtatcatgcccattctttgtttttgaaataatgttaattcaga 1350
            ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 tttctttcttttttttagtatcatgcccattctttgtttttgaaataatgttaattcaga 1350

                                                                        
Query: 1351 atttaaattttccaaatgatgcctataaatattcaattattttaataccaatttattttg 1410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 atttaaattttccaaatgatgcctataaatattcaattattttaataccaatttattttg 1410

                                                                        
Query: 1411 tccaattccttacaatttgttcttgcttttttattaatattgcatttgggcatagggatc 1470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 tccaattccttacaatttgttcttgcttttttattaatattgcatttgggcatagggatc 1470

                                                                        
Query: 1471 aataattgggattggaattttaatcatagggttatttacaactgttgttcttctgccata 1530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 aataattgggattggaattttaatcatagggttatttacaactgttgttcttctgccata 1530

                                                    
Query: 1531 atttcaaaattattttgggaagctcatcctcaaactgtgg 1570
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 atttcaaaattattttgggaagctcatcctcaaactgtgg 1570


 Score =  381 bits (192), Expect = e-105
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtacctccaattgttttagatgaacaaggtgacgtagttacaggaccattgccagcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtacctccaattgttttagatgaacaaggtgacgtagttacaggaccattgccagcata 60

                                                                       
Query: 61  tgatgcttcaatagcgcatgcacttactcatttgaatgctaccactgaaaccgcatcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgatgcttcaatagcgcatgcacttactcatttgaatgctaccactgaaaccgcatcaac 120

                                                                       
Query: 121 aataaatgaatttattgctctacaattaaataatgctgaagatagtgattttgaagatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aataaatgaatttattgctctacaattaaataatgctgaagatagtgattttgaagatgg 180

                       
Query: 181 tgataatagtaa 192
           ||||||||||||
Sbjct: 181 tgataatagtaa 192


 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 1654 taataataaaataatttcttttctactttg 1683
            ||||||||||||||||||||||||||||||
Sbjct: 1654 taataataaaataatttcttttctactttg 1683


>Contig-U07860-1 (Contig-U07860-1Q) /CSM_Contig/Contig-U07860-1Q.Seq.d
          Length = 954

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 457 tataaaatcatatataaaaataaaa 481
           |||||| ||||||||||||||||||
Sbjct: 83  tataaattcatatataaaaataaaa 59


>Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Contig-U03915-1Q.Seq.d
          Length = 167

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 610 agtattatttttaatattat 629
           ||||||||||||||||||||
Sbjct: 127 agtattatttttaatattat 146


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,774
Number of Sequences: 6905
Number of extensions: 38774
Number of successful extensions: 4304
Number of sequences better than 10.0: 634
length of query: 1683
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1667
effective length of database: 5,564,391
effective search space: 9275839797
effective search space used: 9275839797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 4
Homology vs DNA 
Query= Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Contig-U12920-1Q.Seq.d
         (1683 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ362593) Dictyostelium discoideum cDNA clone:ddc22h16, 5' ...   432   0.0    2
(AU038321) Dictyostelium discoideum slug cDNA, clone SSH561.      523   0.0    3
(BJ373013) Dictyostelium discoideum cDNA clone:ddc15h07, 3' ...   410   0.0    2
(BJ359553) Dictyostelium discoideum cDNA clone:ddc15h07, 5' ...   460   e-155  3
(AU037359) Dictyostelium discoideum slug cDNA, clone SSD524.      511   e-141  2
(AU073565) Dictyostelium discoideum slug cDNA, clone SSH561.      361   6e-95  1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    40   4e-07  24
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    42   2e-05  17
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    38   2e-04  9
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   5e-04  21
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.002  12
(AE000783) Borrelia burgdorferi B31, complete genome.              36   0.002  20
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.005  13
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    40   0.006  11
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.010  20
(AC210503) Populus trichocarpa clone POP004-G08, complete se...    34   0.011  9
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.022  14
(BV295575) S239P6289FE6.T0 ChinaGrayWolf Canis lupus STS gen...    42   0.026  3
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    34   0.028  20
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   0.062  21
(AC092497) Sus scrofa clone RP44-30C22, complete sequence.         52   0.070  1
(CU655902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.070  1
(AL391595) Human DNA sequence from clone RP11-51I15 on chrom...    44   0.098  3
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    38   0.13   20
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    40   0.18   19
(AQ752198) HS_5571_B2_H06_T7A RPCI-11 Human Male BAC Library...    36   0.21   2
(CP000673) Clostridium kluyveri DSM 555, complete genome.          42   0.27   22
(CW640381) OA_ABa0176M04.r OA_ABa Oryza australiensis genomi...    50   0.28   1
(CL906834) OA_ABa0005H23.f OA_ABa Oryza australiensis genomi...    50   0.28   1
(BW788740) Branchiostoma floridae cDNA, gastrula clone:bfga0...    50   0.28   1
(BW775784) Branchiostoma floridae cDNA, gastrula clone:bfga0...    50   0.28   1
(BV374616) S231P6532RC1.T0 BedlingtonTerrier Canis familiari...    42   0.33   2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    34   0.33   20
(CR853300) Wallaby DNA sequence from clone MEKBa-585D22.           38   0.37   10
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    36   0.41   18
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   0.42   17
(AC013692) Homo sapiens clone RP11-21L8, *** SEQUENCING IN P...    40   0.42   8
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    32   0.44   15
(EF533695) Glycine max clone BAC GM_WBb098N15, complete sequ...    36   0.45   9
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   0.50   12
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.51   12
(DJ025870) Genome-wide DNA marker of Saccharomyces cerevisiae.     38   0.55   2
(AC209107) Populus trichocarpa clone POP088-K16, complete se...    38   0.56   7
(AF123770) Shuttle vector pPAC-ResQ, complete sequence.            38   0.67   2
(AY339820) Mx-Lox targeting vector, complete sequence.             38   0.68   2
(BD263399) Compositions and methods for use in recombination...    38   0.68   2
(BD263369) Compositions and methods for use in recombination...    38   0.69   2
(DQ232601) Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP, comp...    38   0.69   2
(DQ232600) Receiver Vector p415-CYC1-CRE1a-SSRE-GFP, complet...    38   0.69   2
(CS408070) Sequence 186 from Patent WO2006044840.                  38   0.69   2
(CS614159) Sequence 178 from Patent WO2007047738.                  38   0.69   2
(CS408062) Sequence 178 from Patent WO2006044840.                  38   0.69   2
(CS408068) Sequence 184 from Patent WO2006044840.                  38   0.69   2
(U38900) Yeast-bacteria shuttle vector pClasper with F facto...    38   0.69   2
(AY297714) Yeast truncation assay backbone vector pLSK870, c...    38   0.69   2
(CS408067) Sequence 183 from Patent WO2006044840.                  38   0.69   2
(EA753661) Sequence 2 from patent US 7371539.                      38   0.69   2
(AF474332) Cloning vector pBC214, complete sequence.               38   0.69   2
(EA753660) Sequence 1 from patent US 7371539.                      38   0.69   2
(BD263370) Compositions and methods for use in recombination...    38   0.69   2
(DQ642042) Shuttle vector pMQ95, complete sequence.                38   0.69   2
(BD263400) Compositions and methods for use in recombination...    38   0.70   2
(DI063792) A-Peptide screening assay.                              38   0.70   2
(BD234592) Screening assay of Abeta-peptide.                       38   0.70   2
(AX026823) Sequence 11 from Patent DE19856261.                     38   0.70   2
(AY150809) Cloning vector pRS317, complete sequence.               38   0.70   2
(DL079413) METHOD FOR SCREENING INHIBITORS OF THE GAMMA-SECR...    38   0.70   2
(DI121399) Method for screening inhibitors of the gamma-secr...    38   0.70   2
(DI059198) A-Peptide screening assay.                              38   0.70   2
(CQ963565) Sequence 10 from Patent WO2004104037.                   38   0.70   2
(CQ955558) Sequence 10 from Patent EP1481987.                      38   0.70   2
(BD234593) Screening assay of Abeta-peptide.                       38   0.70   2
(AX026824) Sequence 12 from Patent DE19856261.                     38   0.70   2
(EU418980) Cloning vector pBC542, complete sequence.               38   0.70   2
(DL079415) METHOD FOR SCREENING INHIBITORS OF THE GAMMA-SECR...    38   0.70   2
(DI121442) Method for screening inhibitors of the gamma-secr...    38   0.70   2
(CQ963571) Sequence 16 from Patent WO2004104037.                   38   0.70   2
(CQ955564) Sequence 16 from Patent EP1481987.                      38   0.70   2
(EU546823) Cloning vector pMQ150, complete sequence.               38   0.70   2
(DQ642039) Shuttle vector pMQ78, complete sequence.                38   0.70   2
(EU483152) Shuttle vector pMQ122, complete sequence.               38   0.70   2
(DQ230318) Shuttle/allelic-replacement vector pMQ83, complet...    38   0.70   2
(EU546822) Cloning vector pMQ125, complete sequence.               38   0.70   2
(AY428061) UAS-less reporter vector pMELbeta2, complete sequ...    38   0.70   2
(AY428055) UAS-less reporter vector pMELbeta, complete seque...    38   0.70   2
(DQ642038) Shuttle vector pMQ91, complete sequence.                38   0.70   2
(EU546821) Cloning vector pMQ124, complete sequence.               38   0.70   2
(AF173953) Cloning vector pDDB57 complete sequence.                38   0.70   2
(DQ230317) Shuttle/allelic-replacement vector pMQ30, complet...    38   0.70   2
(AF134168) Yeast 2-hybrid vector pC-ACT.2 complete sequence.       38   0.70   2
(AF134167) Yeast 2-hybrid vector pC-ACT.1 complete sequence.       38   0.70   2
(DQ230319) Shuttle/allelic-replacement vector pMQ75, complet...    38   0.70   2
(DQ642035) Shuttle vector pMQ70, complete sequence.                38   0.70   2
(EA289566) Sequence 61 from patent US 7270969.                     38   0.70   2
(AY428056) UAS-less reporter vector pMELalpha, complete sequ...    38   0.70   2
(AY428060) UAS-less reporter vector pMELalpha2, complete seq...    38   0.70   2
(DQ232603) Expression Vector p415-TEF-DsRed-Exp, complete se...    38   0.70   2
(DQ230323) Shuttle vector pMQ52, complete sequence.                38   0.70   2
(CS244667) Sequence 45 from Patent WO2005118633.                   38   0.70   2
(AX057722) Sequence 45 from Patent WO0075324.                      38   0.70   2

>(BJ362593) Dictyostelium discoideum cDNA clone:ddc22h16, 5' end,
           single read.
          Length = 438

 Score =  432 bits (218), Expect(2) = 0.0
 Identities = 218/218 (100%)
 Strand = Plus / Plus


Query: 597 gtgaatggttttcagtattatttttaatattattcactttattaattggattaaaattgg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgaatggttttcagtattatttttaatattattcactttattaattggattaaaattgg 60


Query: 657 ataattacttgaattggagttggccaatagttttccttccattaatgctattaacgtttc 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataattacttgaattggagttggccaatagttttccttccattaatgctattaacgtttc 120


Query: 717 aattttttgtaactcctttaatatttgttatttttaaagtaatgtttaatcattcatatg 776
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattttttgtaactcctttaatatttgttatttttaaagtaatgtttaatcattcatatg 180


Query: 777 aagaagaattagcaccagattcatttataaaaccatta 814
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaagaattagcaccagattcatttataaaaccatta 218

 Score =  389 bits (196), Expect(2) = 0.0
 Identities = 200/202 (99%)
 Strand = Plus / Plus


Query: 833  atattaccattacaaccaaatgaaaccatatcaaaagtattattatttactccaatttta 892
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 237  atattaccattacaaccaaatgaaaccatatcaaaagtnttattatttactccaatttta 296


Query: 893  tgtatgatttcatttgtggtattattagtttcaaaattaatgatggaatatatttcatgg 952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297  tgtatgatttcatttgtggtattattagtttcaaaattaatgatggaatatatttcatgg 356


Query: 953  gtttatgtgtttattcccatttttatgttttgtatttactttatgattcttactgttgga 1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357  gtttatgtgtttattcccatttttatgttttgtatttactttatgattcttactgttgga 416


Query: 1013 tttccagaaagaattgattcag 1034
            |||||| |||||||||||||||
Sbjct: 417  tttccanaaagaattgattcag 438

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,844,490,824
Number of extensions: 123568411
Number of successful extensions: 10706016
Number of sequences better than 10.0: 480
Length of query: 1683
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1659
Effective length of database: 97,308,875,965
Effective search space: 161435425225935
Effective search space used: 161435425225935
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 5
Homology vs Protein 
Query= Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Contig-U12920-1Q.Seq.d
         (1683 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7SYC7) RecName: Full=Transmembrane protein 185-like;  &BC05491...    40   0.20
AY576274_1(AY576274|pid:none) Schistosoma mansoni putative seven...    39   0.75
AM494972_629(AM494972|pid:none) Leishmania braziliensis chromoso...    38   0.98
(Q08DE2) RecName: Full=Transmembrane protein 185B; AltName: Full...    38   1.3
(Q9H7F4) RecName: Full=Transmembrane protein 185B; AltName: Full...    37   1.7
BC123093_1(BC123093|pid:none) Xenopus tropicalis hypothetical pr...    37   1.7
AK289880_1(AK289880|pid:none) Homo sapiens cDNA FLJ77405 complet...    37   1.7
FN357542_6(FN357542|pid:none) Schistosoma mansoni genome sequenc...    37   1.7
(Q5R8H8) RecName: Full=Transmembrane protein 185A; AltName: Full...    36   3.7
(Q8NFB2) RecName: Full=Transmembrane protein 185A; AltName: Full...    36   3.7

>(Q7SYC7) RecName: Full=Transmembrane protein 185-like;
            &BC054917_1(BC054917|pid:none)
          Length = 351

 Score = 40.4 bits (93), Expect = 0.20
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
 Frame = +2

Query: 656  DNYLNWSWPIVFLPLMLLTFQFFVTPLIFVIFKVMFNHSYEEELAPDXXXXXXXXXXXXX 835
            D  ++W W +V +PL +L     +  L ++++ V+F  S +
Sbjct: 162  DGIISWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMD-----------------VI 204

Query: 836  XXXQPNETISKVLLFTPILCMISFVVLLVSKLMMEYI-SWVYVFIPIFMFCIYFMILTVG 1012
               +       +   T ++ +++F +LLV KL   Y  ++V VF+P+++  +  M+ T G
Sbjct: 205  AEQRRTHITMAISWMTIVVPLLTFEILLVHKLDNHYSPNYVPVFVPLWVSLVTLMVTTFG 264

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,755,656,672
Number of extensions: 26989628
Number of successful extensions: 68851
Number of sequences better than 10.0: 10
Number of HSP's gapped: 68756
Number of HSP's successfully gapped: 10
Length of query: 561
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 427
Effective length of database: 617,481,958
Effective search space: 263664796066
Effective search space used: 263664796066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.17  top: 0.47  tms: 0.53  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 68.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for Contig-U12920-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0