Contig-U12917-1 |
Contig ID |
Contig-U12917-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1254 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
2858570 |
End point |
2859803 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
23 |
Number of EST |
32 |
Link to clone list |
U12917 |
List of clone(s) |
est1=SFE355F,1,276 est2=SFA265F,2,443 est3=AFJ835F,7,684 est4=AFH586F,8,382 est5=VFO129F,9,495 est6=SFH792F,13,626 est7=SFH892F,13,627 est8=AFF383F,19,544 est9=VFJ713E,19,1186 est10=VFA629F,20,580 est11=VFB482F,20,537 est12=VFJ650F,20,539 est13=CHA435F,24,541 est14=CFF675F,25,199 est15=VFE618F,25,456 est16=VFD383E,26,1251 est17=SFE746F,31,186 est18=VFO166F,31,506 est19=SSK878F,39,557 est20=SFI592F,41,707 est21=SLH687E,50,1255 est22=SFE746Z,478,1255 est23=VFB482Z,529,1224 est24=SFE355Z,548,1204 est25=SSK878Z,583,1255 est26=VFA629Z,596,1182 est27=CFA494Z,655,999 est28=SFA265Z,694,1228 est29=SSD793E,853,1255 est30=AFF383Z,864,1230 est31=VFE618Z,895,1230 est32=VFO166Z,957,1090
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 4 |
Homology vs DNA |
Query= Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Contig-U12917-1Q.Seq.d (1254 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ397963) Dictyostelium discoideum cDNA clone:dds10l11, 3' ... 1407 0.0 2 (BJ430585) Dictyostelium discoideum cDNA clone:ddv7f21, 3' e... 1330 0.0 2 (BJ400304) Dictyostelium discoideum cDNA clone:dds9n13, 3' e... 1292 0.0 1 (BJ429514) Dictyostelium discoideum cDNA clone:ddv3d22, 3' e... 1291 0.0 1 (C94359) Dictyostelium discoideum slug cDNA, clone SSK878. 1257 0.0 1 (BJ432875) Dictyostelium discoideum cDNA clone:ddv20j03, 3' ... 1195 0.0 2 (BJ429096) Dictyostelium discoideum cDNA clone:ddv2i08, 3' e... 1158 0.0 1 (BJ398665) Dictyostelium discoideum cDNA clone:dds1a18, 3' e... 1027 0.0 1 (BJ327402) Dictyostelium discoideum cDNA clone:dda20f10, 5' ... 868 0.0 3 (BJ412309) Dictyostelium discoideum cDNA clone:ddv7f21, 5' e... 866 0.0 2 (BJ388939) Dictyostelium discoideum cDNA clone:dds16h23, 5' ... 852 0.0 3 (BJ389457) Dictyostelium discoideum cDNA clone:dds18g23, 5' ... 839 0.0 2 (AU062123) Dictyostelium discoideum slug cDNA, clone SLH687. 821 0.0 4 (BJ388940) Dictyostelium discoideum cDNA clone:dds16h24, 5' ... 795 0.0 4 (BJ414690) Dictyostelium discoideum cDNA clone:ddv20j03, 5' ... 767 0.0 3 (BJ410922) Dictyostelium discoideum cDNA clone:ddv2i08, 5' e... 854 0.0 3 (BJ323693) Dictyostelium discoideum cDNA clone:dda11f21, 5' ... 880 0.0 2 (BJ362537) Dictyostelium discoideum cDNA clone:ddc22f10, 5' ... 860 0.0 2 (BJ411294) Dictyostelium discoideum cDNA clone:ddv3d22, 5' e... 759 0.0 3 (AU039388) Dictyostelium discoideum slug cDNA, clone SLH687. 948 0.0 1 (BJ414819) Dictyostelium discoideum cDNA clone:ddv20c14, 5' ... 482 0.0 4 (BJ417122) Dictyostelium discoideum cDNA clone:ddv29c17, 5' ... 856 0.0 2 (BJ417079) Dictyostelium discoideum cDNA clone:ddv29i07, 5' ... 829 0.0 2 (BJ409789) Dictyostelium discoideum cDNA clone:ddv10c06, 5' ... 854 0.0 1 (BJ387304) Dictyostelium discoideum cDNA clone:dds1a18, 5' e... 676 0.0 2 (AU037566) Dictyostelium discoideum slug cDNA, clone SSD793. 724 0.0 1 (BJ373200) Dictyostelium discoideum cDNA clone:ddc1l24, 3' e... 658 0.0 1 (BJ427912) Dictyostelium discoideum cDNA clone:ddv10c06, 3' ... 615 e-171 1 (BJ340141) Dictyostelium discoideum cDNA clone:dda11f21, 3' ... 597 e-166 1 (BJ326543) Dictyostelium discoideum cDNA clone:dda16k21, 5' ... 313 e-166 4 (BJ388465) Dictyostelium discoideum cDNA clone:dds9n13, 5' e... 541 e-149 1 (AU074487) Dictyostelium discoideum slug cDNA, clone SSK878. 476 e-129 1 (BJ359096) Dictyostelium discoideum cDNA clone:ddc12e20, 5' ... 299 1e-84 2 (BJ386737) Dictyostelium discoideum cDNA clone:dds10l11, 5' ... 172 7e-61 4 (BJ436024) Dictyostelium discoideum cDNA clone:ddv29c17, 3' ... 163 3e-50 2 (CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen... 36 0.006 18 (AE017308) Mycoplasma mobile 163K complete genome. 34 0.016 22 (AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.028 20 (DH710562) Rattus norvegicus DNA, BAC clone: RNB1-274C19, 3'... 52 0.052 1 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 38 0.092 21 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 38 0.100 21 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.13 10 (CP000727) Clostridium botulinum A str. Hall, complete genome. 38 0.15 20 (CT030177) M.truncatula DNA sequence from clone MTH2-154J16 ... 38 0.18 8 (AM483827) Vitis vinifera contig VV78X169845.22, whole genom... 46 0.20 2 (CI209453) Oryza sativa Japonica Group cDNA, clone: 038-M039... 50 0.21 1 (BJ394047) Dictyostelium discoideum cDNA clone:dds33h17, 5' ... 50 0.21 1 (EJ398531) 1093012019092 Global-Ocean-Sampling_GS-28-01-01-1... 42 0.22 2 (AC138062) Homo sapiens 12 BAC RP11-76D21 (Roswell Park Canc... 42 0.25 2 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 30 0.27 13 (AC146553) Medicago truncatula clone mth2-9e24, complete seq... 38 0.27 8 (AM437214) Vitis vinifera contig VV78X195020.14, whole genom... 40 0.31 3 (AL844509) Plasmodium falciparum chromosome 13. 34 0.32 19 (DQ366730) Uncultured Prochlorococcus marinus clone HOT0M-10... 36 0.38 5 (AC150001) Strongylocentrotus purpuratus clone R3-60F6, WORK... 36 0.41 6 (AP007380) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 0.42 3 (AC114107) Rattus norvegicus clone CH230-23I11, *** SEQUENCI... 38 0.44 2 (AC118396) Rattus norvegicus clone CH230-112E22, WORKING DRA... 38 0.44 2 (AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 32 0.61 8 (EJ933828) 1093018818653 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.66 3 (AC150515) Bos taurus BAC CH240-118E9 (Children's Hospital ... 38 0.67 4 (BJ416228) Dictyostelium discoideum cDNA clone:ddv25k08, 5' ... 36 0.69 2 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.77 8 (AC026780) Homo sapiens chromosome 5 clone CTC-529L17, compl... 42 0.81 6 (DI155197) lawsonia intracellularis subunit vaccines. 48 0.81 1 (DD307807) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 48 0.81 1 (DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 48 0.81 1 (DD303257) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 48 0.81 1 (CS138801) Sequence 1 from Patent WO2005070958. 48 0.81 1 (AC173670) Bos taurus clone CH240-186B23, WORKING DRAFT SEQU... 48 0.81 1 (AC169614) Bos taurus clone CH240-191O1, WORKING DRAFT SEQUE... 48 0.81 1 (DX558521) GH_MBb0087D20f GH_MBb Gossypium hirsutum genomic ... 48 0.81 1 (CJ439135) Macaca fascicularis mRNA, clone: QccE-16388, 5' e... 48 0.81 1 (CI032863) Oryza sativa Japonica Group cDNA, clone: 009-M103... 48 0.81 1 (CI029711) Oryza sativa Japonica Group cDNA, clone: 009-M067... 48 0.81 1 (CI024267) Oryza sativa Japonica Group cDNA, clone: 009-M005... 48 0.81 1 (AM180252) Lawsonia intracellularis PHE/MN1-00. 48 0.81 1 (AE017263) Mesoplasma florum L1 complete genome. 34 0.82 22 (CI209525) Oryza sativa Japonica Group cDNA, clone: 038-M040... 34 0.86 3 (CJ468987) Macaca fascicularis mRNA, clone: QnpA-18953, 5' e... 38 0.89 2 (DU949209) 213794 Tomato MboI BAC Library Solanum lycopersic... 40 1.0 2 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 1.3 17 (AY380826) Lymphocystis disease virus - isolate China, compl... 34 1.3 12 (AR546470) Sequence 1601 from patent US 6747137. 42 1.4 2 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 1.6 17 (AE017332) Mycoplasma hyopneumoniae 232, complete genome. 32 1.7 20 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 1.7 18 (AC178464) Strongylocentrotus purpuratus clone R3-113D23, WO... 42 1.8 6 (EK340190) 1095467059084 Global-Ocean-Sampling_GS-31-01-01-1... 30 2.1 4 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 38 2.2 15 (AZ345007) 1M0079B19F Mouse 10kb plasmid UUGC1M library Mus ... 44 2.2 2 (AL844507) Plasmodium falciparum chromosome 8. 32 2.3 20 (BJ424663) Dictyostelium discoideum cDNA clone:ddv53l05, 5' ... 40 2.4 2 (AC149862) Papio anubis clone RP41-437F19, WORKING DRAFT SEQ... 40 2.4 6 (EK445086) 1095467025844 Global-Ocean-Sampling_GS-32-01-01-1... 30 2.5 4 (BJ370330) Dictyostelium discoideum cDNA clone:ddc53b21, 5' ... 42 2.5 2 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 2.7 21 (EK466918) 1095469427635 Global-Ocean-Sampling_GS-32-01-01-1... 34 2.8 3 (EK562950) 1095521019502 Global-Ocean-Sampling_GS-32-01-01-1... 30 2.8 4 (AM460977) Vitis vinifera contig VV78X194429.9, whole genome... 46 3.2 1
>(BJ397963) Dictyostelium discoideum cDNA clone:dds10l11, 3' end, single read. Length = 775
Score = 1407 bits (710), Expect(2) = 0.0 Identities = 710/710 (100%) Strand = Plus / Minus
Query: 475 gaattagcaaaagaagaattacaaggagtcactggtttagatacaattgtttattcttca 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 775 gaattagcaaaagaagaattacaaggagtcactggtttagatacaattgtttattcttca 716
Query: 535 ttttatcgtgtttcaactgattatcatatggcaaagagtcaagcaagtgaattttataaa 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 715 ttttatcgtgtttcaactgattatcatatggcaaagagtcaagcaagtgaattttataaa 656
Query: 595 aatgctttaatgtacttatcatactgtaaattagaaacaatctctcaagaagaacaagca 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 aatgctttaatgtacttatcatactgtaaattagaaacaatctctcaagaagaacaagca 596
Query: 655 agtcttgcttataatttatgtattgccgctttagttggtgaaaatgtttatggttttggt 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 agtcttgcttataatttatgtattgccgctttagttggtgaaaatgtttatggttttggt 536
Query: 715 gatttaattgcaaatccaattcttaaagcattagaaggatcacaacataattggttaatt 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 gatttaattgcaaatccaattcttaaagcattagaaggatcacaacataattggttaatt 476
Query: 775 gcatttttaaaggcattcaatattggtgatattcaacaatttgaaggattaatgtcacaa 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 gcatttttaaaggcattcaatattggtgatattcaacaatttgaaggattaatgtcacaa 416
Query: 835 catcgtgatattatttcaacacaaactgcaatcacaaataatatgcaaaaattaagacaa 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 catcgtgatattatttcaacacaaactgcaatcacaaataatatgcaaaaattaagacaa 356
Query: 895 aagatatcgattctctctttgttagaattggcttttagaacaccatctgacaagagatca 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 aagatatcgattctctctttgttagaattggcttttagaacaccatctgacaagagatca 296
Query: 955 atttcattttcaaagattgctcaagccactaaattaccattaggtgagattgaacatctt 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 atttcattttcaaagattgctcaagccactaaattaccattaggtgagattgaacatctt 236
Query: 1015 ttaatgaaatcactttcattaaatttgatcaaaggttcaatcgatcaaactgttgaaatc 1074 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 ttaatgaaatcactttcattaaatttgatcaaaggttcaatcgatcaaactgttgaaatc 176
Query: 1075 attcacatcacttgggtcactccaagaattttagatcttaatcaaatcaattcaatgaat 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 attcacatcacttgggtcactccaagaattttagatcttaatcaaatcaattcaatgaat 116
Query: 1135 aatagaatcgctgaatggactgaaaaagcaaaaacttctttaagattagt 1184 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 aatagaatcgctgaatggactgaaaaagcaaaaacttctttaagattagt 66
Score = 30.2 bits (15), Expect(2) = 0.0 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 1185 tgaagatgatactgt 1199 ||||||||||||||| Sbjct: 66 tgaagatgatactgt 52
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,695,811,669 Number of extensions: 110436333 Number of successful extensions: 9458454 Number of sequences better than 10.0: 233 Length of query: 1254 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1230 Effective length of database: 97,308,875,965 Effective search space: 119689917436950 Effective search space used: 119689917436950 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 5 |
Homology vs Protein |
Query= Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Contig-U12917-1Q.Seq.d (1254 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subu... 751 0.0 AK117761_1(AK117761|pid:none) Arabidopsis thaliana At4g19006 mRN... 296 8e-79 BT039217_1(BT039217|pid:none) Zea mays full-length cDNA clone ZM... 285 2e-75 EU964603_1(EU964603|pid:none) Zea mays clone 280258 26S proteaso... 284 5e-75 EU961903_1(EU961903|pid:none) Zea mays clone 238965 26S proteaso... 283 9e-75 BT040556_1(BT040556|pid:none) Zea mays full-length cDNA clone ZM... 283 1e-74 EU974195_1(EU974195|pid:none) Zea mays clone 442631 26S proteaso... 280 1e-73 DQ226994_1(DQ226994|pid:none) Nicotiana benthamiana RPN9 mRNA, p... 270 1e-70 AY223111_1(AY223111|pid:none) Schistosoma japonicum clone ZZD137... 252 2e-65 AY811806_1(AY811806|pid:none) Schistosoma japonicum SJCHGC06237 ... 252 2e-65 BC049415_1(BC049415|pid:none) Danio rerio proteasome (prosome, m... 246 1e-63 CP001331_348(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 242 2e-62 (P84169) RecName: Full=26S proteasome non-ATPase regulatory subu... 241 3e-62 BC081154_1(BC081154|pid:none) Xenopus laevis MGC84231 protein, m... 240 7e-62 (B0BN93) RecName: Full=26S proteasome non-ATPase regulatory subu... 240 9e-62 AY891992_1(AY891992|pid:none) Synthetic construct Homo sapiens c... 239 1e-61 AB009398_1(AB009398|pid:none) Homo sapiens mRNA for 26S proteaso... 239 1e-61 (Q5E964) RecName: Full=26S proteasome non-ATPase regulatory subu... 239 2e-61 BT043856_1(BT043856|pid:none) Salmo salar clone HM4_2965 proteas... 239 2e-61 BT074801_1(BT074801|pid:none) Osmerus mordax clone omor-eva-508-... 238 3e-61 AK314733_1(AK314733|pid:none) Homo sapiens cDNA, FLJ95595, highl... 238 3e-61 AJ575131_1(AJ575131|pid:none) Aspergillus niger rpnI gene for pu... 238 3e-61 AB170074_1(AB170074|pid:none) Macaca fascicularis brain cDNA clo... 238 4e-61 BT082719_1(BT082719|pid:none) Anoplopoma fimbria clone afim-evh-... 236 1e-60 AK163017_1(AK163017|pid:none) Mus musculus 0 day neonate thymus ... 234 6e-60 CR382131_302(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 233 8e-60 BX088700_67(BX088700|pid:none) DNA centromeric region sequence f... 230 7e-59 AM920437_149(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 230 7e-59 AP007155_340(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 230 9e-59 BT076810_1(BT076810|pid:none) Caligus rogercresseyi clone crog-e... 229 2e-58 AB070262_1(AB070262|pid:none) Oryza sativa Japonica Group OsRPN9... 228 3e-58 AE017342_502(AE017342|pid:none) Cryptococcus neoformans var. neo... 222 3e-56 T24581(T24581) hypothetical protein T06D8.8 - Caenorhabditis ele... 221 6e-56 (Q9US13) RecName: Full=Probable 26S proteasome regulatory subuni... 216 1e-54 AE014297_3507(AE014297|pid:none) Drosophila melanogaster chromos... 214 7e-54 AK094775_1(AK094775|pid:none) Homo sapiens cDNA FLJ37456 fis, cl... 204 4e-51 AK295944_1(AK295944|pid:none) Homo sapiens cDNA FLJ53046 complet... 204 5e-51 CU928171_152(CU928171|pid:none) Kluyveromyces thermotolerans str... 200 1e-49 FJ915071_1(FJ915071|pid:none) Danio rerio proteasome 26S non-ATP... 183 1e-44 CR940353_261(CR940353|pid:none) Theileria annulata strain Ankara... 174 8e-42 FN392319_377(FN392319|pid:none) Pichia pastoris GS115 chromosome... 173 1e-41 CP000496_120(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 159 2e-37 FM992689_119(FM992689|pid:none) Candida dubliniensis CD36 chromo... 152 2e-35 AM055943_39(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA... 135 4e-30 AF107836_1(AF107836|pid:none) Homo sapiens clone PFTGT1-2 26S pr... 132 2e-29 EF576115_1(EF576115|pid:none) Oryza sativa (indica cultivar-grou... 128 5e-28 AM494956_144(AM494956|pid:none) Leishmania braziliensis chromoso... 125 3e-27 CT005258_118(CT005258|pid:none) Leishmania major strain Friedlin... 120 1e-25 EF215207_1(EF215207|pid:none) Callithrix jacchus clone K13-52.1_... 99 2e-19 BT024259_1(BT024259|pid:none) Drosophila melanogaster IP15827 fu... 63 3e-08 (Q54KZ8) RecName: Full=Eukaryotic translation initiation factor ... 59 5e-07 CR940353_360(CR940353|pid:none) Theileria annulata strain Ankara... 56 2e-06 (Q5B5C1) RecName: Full=Eukaryotic translation initiation factor ... 54 9e-06 (A7SPX9) RecName: Full=Eukaryotic translation initiation factor ... 54 1e-05 AE017349_315(AE017349|pid:none) Cryptococcus neoformans var. neo... 52 4e-05 CP001327_160(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 50 2e-04 DQ440395_1(DQ440395|pid:none) Aedes aegypti clone AET-529 COP9 s... 49 3e-04 (B4P6M6) RecName: Full=Eukaryotic translation initiation factor ... 49 3e-04 EU969436_1(EU969436|pid:none) Zea mays clone 330210 COP9 signalo... 49 5e-04 (B3NRC6) RecName: Full=Eukaryotic translation initiation factor ... 49 5e-04 (Q0UXJ7) RecName: Full=Eukaryotic translation initiation factor ... 48 6e-04 (Q94899) RecName: Full=COP9 signalosome complex subunit 2; ... 48 8e-04 BT047127_1(BT047127|pid:none) Salmo salar clone ssal-rgb2-504-16... 48 8e-04 AP004051_2(AP004051|pid:none) Oryza sativa Japonica Group genomi... 47 0.001 FB863367_1(FB863367|pid:none) Sequence 82640 from Patent WO20080... 47 0.001 (B4HR14) RecName: Full=Eukaryotic translation initiation factor ... 47 0.002 (Q7ZYU8) RecName: Full=Eukaryotic translation initiation factor ... 46 0.002 BC059697_1(BC059697|pid:none) Danio rerio COP9 constitutive phot... 46 0.002 DQ235192_1(DQ235192|pid:none) Solanum tuberosum clone 167F07 unk... 46 0.003 (Q292F0) RecName: Full=Eukaryotic translation initiation factor ... 45 0.005 AY398350_1(AY398350|pid:none) Danio rerio clone RK111A2F06 dendr... 45 0.005 (B4GDM5) RecName: Full=Eukaryotic translation initiation factor ... 45 0.005 FN357353_17(FN357353|pid:none) Schistosoma mansoni genome sequen... 45 0.007 CR854996_7(CR854996|pid:none) Oryza sativa genomic DNA, chromoso... 45 0.007 FJ502068_1(FJ502068|pid:none) Aristichthys nobilis clone A146 Co... 45 0.007 (B3MCZ5) RecName: Full=Eukaryotic translation initiation factor ... 44 0.009 BT076863_1(BT076863|pid:none) Caligus rogercresseyi clone crog-e... 44 0.012 AK342420_1(AK342420|pid:none) Acyrthosiphon pisum ACYPI001319 mR... 44 0.012 (B0WTN3) RecName: Full=Eukaryotic translation initiation factor ... 44 0.012 (Q9UUJ7) RecName: Full=COP9 signalosome complex subunit 7; &AL1... 44 0.016 CR954201_330(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 44 0.016 (Q5DHT6) RecName: Full=Eukaryotic translation initiation factor ... 44 0.016 (Q7Q068) RecName: Full=Eukaryotic translation initiation factor ... 44 0.016 AJ720533_1(AJ720533|pid:none) Gallus gallus mRNA for hypothetica... 43 0.021 (Q55BD5) RecName: Full=COP9 signalosome complex subunit 7; ... 43 0.021 (B4KT65) RecName: Full=Eukaryotic translation initiation factor ... 43 0.027 AF071317_1(AF071317|pid:none) Mus musculus COP9 complex subunit ... 42 0.035 (Q5ZJ64) RecName: Full=Eukaryotic translation initiation factor ... 42 0.035 FB863381_1(FB863381|pid:none) Sequence 82654 from Patent WO20080... 42 0.035 CP000592_168(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.046 AK222564_1(AK222564|pid:none) Homo sapiens mRNA for dendritic ce... 42 0.046 AK227983_1(AK227983|pid:none) Arabidopsis thaliana mRNA for hypo... 42 0.061 (Q7L2H7) RecName: Full=Eukaryotic translation initiation factor ... 41 0.079 (Q99JX4) RecName: Full=Eukaryotic translation initiation factor ... 41 0.079 AL606494_8(AL606494|pid:none) Mouse DNA sequence from clone RP23... 41 0.079 AK304378_1(AK304378|pid:none) Homo sapiens cDNA FLJ54904 complet... 41 0.079 FN357341_58(FN357341|pid:none) Schistosoma mansoni genome sequen... 41 0.079 (Q5R8C4) RecName: Full=Eukaryotic translation initiation factor ... 41 0.079 BC012659_1(BC012659|pid:none) Mus musculus COP9 (constitutive ph... 41 0.079 (Q9H9Q2) RecName: Full=COP9 signalosome complex subunit 7b; ... 41 0.10 BC091493_1(BC091493|pid:none) Homo sapiens COP9 constitutive pho... 41 0.10 BT033449_1(BT033449|pid:none) Zea mays full-length cDNA clone ZM... 41 0.10 (Q8BV13) RecName: Full=COP9 signalosome complex subunit 7b; ... 41 0.10 (Q2KI56) RecName: Full=COP9 signalosome complex subunit 7b; ... 41 0.10 AK170140_1(AK170140|pid:none) Mus musculus NOD-derived CD11c +ve... 40 0.13 AF277183_1(AF277183|pid:none) Homo sapiens PNAS-125 mRNA, comple... 40 0.18 AM260522_1524(AM260522|pid:none) Helicobacter acinonychis str. S... 39 0.30 AY062722_1(AY062722|pid:none) Arabidopsis thaliana Unknown prote... 39 0.39 AE001439_15(AE001439|pid:none) Helicobacter pylori J99, complete... 39 0.39 CP000771_697(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 39 0.39 CP001173_16(CP001173|pid:none) Helicobacter pylori G27, complete... 39 0.51 CP001574_241(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 39 0.51 CP000241_18(CP000241|pid:none) Helicobacter pylori HPAG1, comple... 39 0.51 CP001072_16(CP001072|pid:none) Helicobacter pylori Shi470, compl... 39 0.51 AF064603_1(AF064603|pid:none) Homo sapiens GA17 protein mRNA, co... 38 0.67 BT012433_1(BT012433|pid:none) Drosophila melanogaster RH63621 fu... 38 0.67 CT010477_1(CT010477|pid:none) Mouse DNA sequence from clone RP23... 38 0.67 (Q5IR70) RecName: Full=Cancer-associated gene 1 protein homolog;... 38 0.67 BC093015_1(BC093015|pid:none) Homo sapiens COP9 constitutive pho... 38 0.87 AF193844_1(AF193844|pid:none) Homo sapiens COP9 complex subunit ... 38 0.87 EF678701_1(EF678701|pid:none) Picea sitchensis clone WS0294_G09 ... 38 0.87 (Q9CZ04) RecName: Full=COP9 signalosome complex subunit 7a; ... 38 0.87 CP001217_15(CP001217|pid:none) Helicobacter pylori P12, complete... 38 0.87 BC153238_1(BC153238|pid:none) Bos taurus COP9 constitutive photo... 38 0.87 BX936400_6(BX936400|pid:none) Yersinia pseudotuberculosis IP3295... 38 0.87 AK001318_1(AK001318|pid:none) Homo sapiens cDNA FLJ10456 fis, cl... 38 0.87 (Q5R762) RecName: Full=COP9 signalosome complex subunit 7a; ... 38 0.87 EF678031_1(EF678031|pid:none) Picea sitchensis clone WS0281_M23 ... 38 0.87 (O01422) RecName: Full=COP9 signalosome complex subunit 2; ... 37 1.1 FN318118_1(FN318118|pid:none) Schistosoma japonicum isolate Anhu... 37 1.1 AK013155_1(AK013155|pid:none) Mus musculus 10, 11 days embryo wh... 37 1.1 BT073009_1(BT073009|pid:none) Oncorhynchus mykiss clone omyk-evn... 37 1.5 (P40961) RecName: Full=Prohibitin-1; &AY558096_1(AY558096|pid:n... 37 1.5 AK019122_1(AK019122|pid:none) Mus musculus ES cells cDNA, RIKEN ... 37 1.5 U16737_1(U16737|pid:none) Saccharomyces cerevisiae prohibitin (P... 37 1.5 BT048555_1(BT048555|pid:none) Salmo salar clone ssal-rgb2-643-26... 37 1.5 CU633865_198(CU633865|pid:none) Podospora anserina genomic DNA c... 37 1.5 FN357329_20(FN357329|pid:none) Schistosoma mansoni genome sequen... 37 1.9 AK098334_1(AK098334|pid:none) Homo sapiens cDNA FLJ41015 fis, cl... 37 1.9 (Q4UJX3) RecName: Full=Ferredoxin; &CP000053_1315(CP000053|pid:... 37 1.9 (Q9BXT5) RecName: Full=Testis-expressed sequence 15 protein; Alt... 36 2.5 CP000867_71(CP000867|pid:none) Methanococcus maripaludis C6, com... 36 2.5 BC140934_1(BC140934|pid:none) Homo sapiens testis expressed 15, ... 36 2.5 FN314222_1(FN314222|pid:none) Schistosoma japonicum isolate Anhu... 36 2.5 CP000237_3(CP000237|pid:none) Neorickettsia sennetsu strain Miya... 36 2.5 AY814199_1(AY814199|pid:none) Schistosoma japonicum SJCHGC06488 ... 36 2.5 CP000847_1172(CP000847|pid:none) Rickettsia akari str. Hartford,... 36 2.5 CP001229_1338(CP001229|pid:none) Sulfurihydrogenibium azorense A... 36 3.3 CP000435_554(CP000435|pid:none) Synechococcus sp. CC9311, comple... 36 3.3 BT043761_1(BT043761|pid:none) Salmo salar clone HM6_1089 eukaryo... 36 3.3 FB863365_1(FB863365|pid:none) Sequence 82638 from Patent WO20080... 35 4.3 AM910996_359(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 4.3 CP001322_502(CP001322|pid:none) Desulfatibacillum alkenivorans A... 35 4.3 BT077002_1(BT077002|pid:none) Caligus rogercresseyi clone crog-e... 35 5.7 AE014298_2261(AE014298|pid:none) Drosophila melanogaster chromos... 35 5.7 AP009552_3992(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 5.7 EF147928_1(EF147928|pid:none) Populus trichocarpa clone WS0126_A... 35 5.7 AE014298_2260(AE014298|pid:none) Drosophila melanogaster chromos... 35 5.7 CR382139_1094(CR382139|pid:none) Debaryomyces hansenii chromosom... 35 7.4 CP001217_401(CP001217|pid:none) Helicobacter pylori P12, complet... 35 7.4 CP001072_403(CP001072|pid:none) Helicobacter pylori Shi470, comp... 35 7.4 A59065_1(A59065|pid:none) Sequence 6 from Patent EP0752473. &CS... 35 7.4 AF348915_1(AF348915|pid:none) Nitella opaca enolase (eno) gene, ... 35 7.4 FN357551_18(FN357551|pid:none) Schistosoma mansoni genome sequen... 35 7.4 CR382134_616(CR382134|pid:none) Debaryomyces hansenii strain CBS... 35 7.4 CP000123_477(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 7.4 AF348914_1(AF348914|pid:none) Chara corallina enolase (eno) gene... 35 7.4 AM260522_1037(AM260522|pid:none) Helicobacter acinonychis str. S... 35 7.4 CP000077_580(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 35 7.4 AB060239_1(AB060239|pid:none) Macaca fascicularis brain cDNA clo... 34 9.7 CP000246_2424(CP000246|pid:none) Clostridium perfringens ATCC 13... 34 9.7 (Q8C9S4) RecName: Full=Uncharacterized protein C10orf118 homolog... 34 9.7 CP001615_817(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 34 9.7
>(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subunit 13; AltName: Full=26S proteasome regulatory subunit S11; Length = 385
Score = 751 bits (1938), Expect = 0.0 Identities = 385/385 (100%), Positives = 385/385 (100%) Frame = +1
Query: 58 MATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFN 237 MATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFN Sbjct: 1 MATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFN 60
Query: 238 FYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIA 417 FYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIA Sbjct: 61 FYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIA 120
Query: 418 NMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKN 597 NMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKN Sbjct: 121 NMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKN 180
Query: 598 ALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIA 777 ALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIA Sbjct: 181 ALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIA 240
Query: 778 FLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSI 957 FLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSI Sbjct: 241 FLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSI 300
Query: 958 SFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNN 1137 SFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNN Sbjct: 301 SFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNN 360
Query: 1138 RIAEWTEKAKTSLRLVEDDTVDLVA 1212 RIAEWTEKAKTSLRLVEDDTVDLVA Sbjct: 361 RIAEWTEKAKTSLRLVEDDTVDLVA 385
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,757,315,480 Number of extensions: 31890053 Number of successful extensions: 86481 Number of sequences better than 10.0: 173 Number of HSP's gapped: 86305 Number of HSP's successfully gapped: 173 Length of query: 418 Length of database: 1,051,180,864 Length adjustment: 131 Effective length of query: 287 Effective length of database: 627,191,635 Effective search space: 180003999245 Effective search space used: 180003999245 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
8 |
AH (FL, L) |
0 |
AF (FL, S) |
3 |
SL (DIR, L) |
1 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
6 |
CH (FL, L) |
1 |
CF (FL, S) |
2 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |