Contig-U12917-1
Contig ID Contig-U12917-1
Contig update 2002.12.18
Contig sequence
>Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Contig-U12917-1Q.Seq.d
CACTGTTGGCCTACTGGCAATTTCATTTGTATATTACATAAAAACACACA
TCATAAGATGGCAACATATAAACCATTAGAATATTTAGAACATTTAAAAA
AGATTGTACCAGATCTCTCTGATCAAATCAATAATATTAAAGATACATAT
GAAAATAAATTATGGCATCAATTAACAAAACAAATTGAAATGATTATCAT
TTCTCCACAATTATTGGAGAAAAAAGAGTTATTTAATTTTTATACAAACT
TTATCAGAGACTTTGAAAATAAATTAAGACCATTAAGTTTAGTTGAAATT
TGTATTGCTGTTGCAAGACAATTTGATACTGATGAAAGTAGAAAATTCAT
TGAAACTATTTCTCAAAAAGTTAAAAAAGATAAATCAGCATACATTTTAA
CCTTATCATATATTGCAAATATGAATTTACGTTCAGGTGTTGCAGAACAA
TTACAAGATTGTAAAAAAACATTAGAATTAGCAAAAGAAGAATTACAAGG
AGTCACTGGTTTAGATACAATTGTTTATTCTTCATTTTATCGTGTTTCAA
CTGATTATCATATGGCAAAGAGTCAAGCAAGTGAATTTTATAAAAATGCT
TTAATGTACTTATCATACTGTAAATTAGAAACAATCTCTCAAGAAGAACA
AGCAAGTCTTGCTTATAATTTATGTATTGCCGCTTTAGTTGGTGAAAATG
TTTATGGTTTTGGTGATTTAATTGCAAATCCAATTCTTAAAGCATTAGAA
GGATCACAACATAATTGGTTAATTGCATTTTTAAAGGCATTCAATATTGG
TGATATTCAACAATTTGAAGGATTAATGTCACAACATCGTGATATTATTT
CAACACAAACTGCAATCACAAATAATATGCAAAAATTAAGACAAAAGATA
TCGATTCTCTCTTTGTTAGAATTGGCTTTTAGAACACCATCTGACAAGAG
ATCAATTTCATTTTCAAAGATTGCTCAAGCCACTAAATTACCATTAGGTG
AGATTGAACATCTTTTAATGAAATCACTTTCATTAAATTTGATCAAAGGT
TCAATCGATCAAACTGTTGAAATCATTCACATCACTTGGGTCACTCCAAG
AATTTTAGATCTTAATCAAATCAATTCAATGAATAATAGAATCGCTGAAT
GGACTGAAAAAGCAAAAACTTCTTTAAGATTAGTTGAAGATGATACTGTT
GATTTAGTTGCTTAAAATTTTTAATTTAAAATAAATAAATATAAATAAAT
AAAT

Gap no gap
Contig length 1254
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2858570
End point 2859803
Strand (PLUS/MINUS) PLUS
Number of clones 23
Number of EST 32
Link to clone list U12917
List of clone(s)

est1=SFE355F,1,276
est2=SFA265F,2,443
est3=AFJ835F,7,684
est4=AFH586F,8,382
est5=VFO129F,9,495
est6=SFH792F,13,626
est7=SFH892F,13,627
est8=AFF383F,19,544
est9=VFJ713E,19,1186
est10=VFA629F,20,580
est11=VFB482F,20,537
est12=VFJ650F,20,539
est13=CHA435F,24,541
est14=CFF675F,25,199
est15=VFE618F,25,456
est16=VFD383E,26,1251
est17=SFE746F,31,186
est18=VFO166F,31,506
est19=SSK878F,39,557
est20=SFI592F,41,707
est21=SLH687E,50,1255
est22=SFE746Z,478,1255
est23=VFB482Z,529,1224
est24=SFE355Z,548,1204
est25=SSK878Z,583,1255
est26=VFA629Z,596,1182
est27=CFA494Z,655,999
est28=SFA265Z,694,1228
est29=SSD793E,853,1255
est30=AFF383Z,864,1230
est31=VFE618Z,895,1230
est32=VFO166Z,957,1090
Translated Amino Acid sequence
HCWPTGNFICILHKNTHHKMATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTK
QIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETI
SQKVKKDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFY
RVSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDL
IANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKI
SILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIH
ITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVEDDTVDLVA*nf*fkinkyk*in


Translated Amino Acid sequence (All Frames)
Frame A:
HCWPTGNFICILHKNTHHKMATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTK
QIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETI
SQKVKKDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFY
RVSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDL
IANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKI
SILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIH
ITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVEDDTVDLVA*nf*fkinkyk*in


Frame B:
tvgllaisfvyyikthiirwqhinh*ni*ni*krlyqisliksiilkihmkinygin*qn
klk*lsflhnywrkksylifiqtlsetlkin*dh*v*lkfvlllqdnlilmkvenslklf
lkklkkinqhtf*pyhilqi*iyvqvlqnnykivkkh*n*qkknykeslv*iqlfilhfi
vfqliiiwqrvkqvnfikml*ctyhtvn*kqslkknkqvlliiyvlpl*lvkmfmvlvi*
lqiqflkh*kdhniig*lhf*rhsilvifnnlkd*chnivilfqhklqsqiickn*dkry
rfslc*nwllehhltrdqfhfqrllkplnyh*vrlnif**nhfh*i*skvqsikllksft
slgslqef*iliksiq*iieslnglkkqkll*d*lkmilli*llkifnlk*inink*


Frame C:
llaywqfhlyit*khts*dgni*tirifrtfkkdctrsl*snq*y*ryi*k*imasinkt
n*ndyhfstiigekrvi*flyklyqrl*k*iktikfs*nlyccckti*y**k*kih*nyf
sks*kr*isihfnliiyckyeftfrccrtitrl*kniriskrritrshwfrynclffils
cfn*lsygkessk*il*kcfnvliil*irnnlsrrtskscl*fmycrfsw*kclwfw*fn
cksns*sirritt*lvncifkgiqyw*ysti*rinvtts*yyfntncnhk*yakiktkdi
dslfvrigf*nti*qeinfifkdcssh*itir*d*tsfneitfikfdqrfnrsnc*nhsh
hlghsknfrs*snqfne**nr*md*ksknffkis*r*yc*fsclkfli*nk*i*ink


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12917-1 (Contig-U12917-1Q)
/CSM_Contig/Contig-U12917-1Q.Seq.d
(1254 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Conti... 2359 0.0
Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U14458-1 (Contig-U14458-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10820-1 (Contig-U10820-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13788-1 (Contig-U13788-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13217-1 (Contig-U13217-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12038-1 (Contig-U12038-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13108-1 (Contig-U13108-1Q) /CSM_Contig/Conti... 34 0.35

>Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Contig-U12917-1Q.Seq.d
Length = 1254

Score = 2359 bits (1190), Expect = 0.0
Identities = 1204/1211 (99%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggcaatttcatttgtatattacataaaaacacacatcataagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggcaatttcatttgtatattacataaaaacacacatcataagatg 60


Query: 61 gcaacatataaaccattagaatatttagaacatttaaaaaagattgtaccagatctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaacatataaaccattagaatatttagaacatttaaaaaagattgtaccagatctctct 120


Query: 121 gatcaaatcaataatattaaagatacatatgaaaataaattatggcatcaattaacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatcaaatcaataatattaaagatacatatgaaaataaattatggcatcaattaacaaaa 180


Query: 181 caaattgaaatgattatcatttctccacaattattggagaaaaaagagttatttaatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caaattgaaatgattatcatttctccacaattattggagaaaaaagagttatttaatttt 240


Query: 241 tatacaaactttatcagagactttgaaaataaattaagaccattaagtttagttgaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatacaaactttatcagagactttgaaaataaattaagaccattaagtttagttgaaatt 300


Query: 301 tgtattgctgttgcaagacaatttgatactgatgaaagtagaaaattcattgaaactatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtattgctgttgcaagacaatttgatactgatgaaagtagaaaattcattgaaactatt 360


Query: 361 tctcaaaaagttaaaaaagataaatcagcatacattttaaccttatcatatattgcaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctcaaaaagttaaaaaagataaatcagcatacattttaaccttatcatatattgcaaat 420


Query: 421 atgaatttacgttcaggtgttgcagaacaattacaagattgtnnnnnnncattagaatta 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 421 atgaatttacgttcaggtgttgcagaacaattacaagattgtaaaaaaacattagaatta 480


Query: 481 gcaaaagaagaattacaaggagtcactggtttagatacaattgtttattcttcattttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcaaaagaagaattacaaggagtcactggtttagatacaattgtttattcttcattttat 540


Query: 541 cgtgtttcaactgattatcatatggcaaagagtcaagcaagtgaattttataaaaatgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cgtgtttcaactgattatcatatggcaaagagtcaagcaagtgaattttataaaaatgct 600


Query: 601 ttaatgtacttatcatactgtaaattagaaacaatctctcaagaagaacaagcaagtctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttaatgtacttatcatactgtaaattagaaacaatctctcaagaagaacaagcaagtctt 660


Query: 661 gcttataatttatgtattgccgctttagttggtgaaaatgtttatggttttggtgattta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcttataatttatgtattgccgctttagttggtgaaaatgtttatggttttggtgattta 720


Query: 721 attgcaaatccaattcttaaagcattagaaggatcacaacataattggttaattgcattt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attgcaaatccaattcttaaagcattagaaggatcacaacataattggttaattgcattt 780


Query: 781 ttaaaggcattcaatattggtgatattcaacaatttgaaggattaatgtcacaacatcgt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttaaaggcattcaatattggtgatattcaacaatttgaaggattaatgtcacaacatcgt 840


Query: 841 gatattatttcaacacaaactgcaatcacaaataatatgcaaaaattaagacaaaagata 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gatattatttcaacacaaactgcaatcacaaataatatgcaaaaattaagacaaaagata 900


Query: 901 tcgattctctctttgttagaattggcttttagaacaccatctgacaagagatcaatttca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tcgattctctctttgttagaattggcttttagaacaccatctgacaagagatcaatttca 960


Query: 961 ttttcaaagattgctcaagccactaaattaccattaggtgagattgaacatcttttaatg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttttcaaagattgctcaagccactaaattaccattaggtgagattgaacatcttttaatg 1020


Query: 1021 aaatcactttcattaaatttgatcaaaggttcaatcgatcaaactgttgaaatcattcac 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aaatcactttcattaaatttgatcaaaggttcaatcgatcaaactgttgaaatcattcac 1080


Query: 1081 atcacttgggtcactccaagaattttagatcttaatcaaatcaattcaatgaataataga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atcacttgggtcactccaagaattttagatcttaatcaaatcaattcaatgaataataga 1140


Query: 1141 atcgctgaatggactgaaaaagcaaaaacttctttaagattagttgaagatgatactgtt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atcgctgaatggactgaaaaagcaaaaacttctttaagattagttgaagatgatactgtt 1200


Query: 1201 gatttagttgc 1211
|||||||||||
Sbjct: 1201 gatttagttgc 1211


>Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Contig-U11793-1Q.Seq.d
Length = 1442

Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggcaattt 23
|||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggcaattt 23


Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 836 atcgtgatattattt 850
|||||||||||||||
Sbjct: 1242 atcgtgatattattt 1256


>Contig-U14458-1 (Contig-U14458-1Q) /CSM_Contig/Contig-U14458-1Q.Seq.d
Length = 126

Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 3 ctgttggcctactggcaatttcattt 28
||||||||||||||||||||| ||||
Sbjct: 1 ctgttggcctactggcaattttattt 26


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,238
Number of Sequences: 6905
Number of extensions: 22238
Number of successful extensions: 2789
Number of sequences better than 10.0: 632
length of query: 1254
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1238
effective length of database: 5,564,391
effective search space: 6888716058
effective search space used: 6888716058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 4
Homology vs DNA
Query= Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Contig-U12917-1Q.Seq.d
(1254 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ397963) Dictyostelium discoideum cDNA clone:dds10l11, 3' ... 1407 0.0 2
(BJ430585) Dictyostelium discoideum cDNA clone:ddv7f21, 3' e... 1330 0.0 2
(BJ400304) Dictyostelium discoideum cDNA clone:dds9n13, 3' e... 1292 0.0 1
(BJ429514) Dictyostelium discoideum cDNA clone:ddv3d22, 3' e... 1291 0.0 1
(C94359) Dictyostelium discoideum slug cDNA, clone SSK878. 1257 0.0 1
(BJ432875) Dictyostelium discoideum cDNA clone:ddv20j03, 3' ... 1195 0.0 2
(BJ429096) Dictyostelium discoideum cDNA clone:ddv2i08, 3' e... 1158 0.0 1
(BJ398665) Dictyostelium discoideum cDNA clone:dds1a18, 3' e... 1027 0.0 1
(BJ327402) Dictyostelium discoideum cDNA clone:dda20f10, 5' ... 868 0.0 3
(BJ412309) Dictyostelium discoideum cDNA clone:ddv7f21, 5' e... 866 0.0 2
(BJ388939) Dictyostelium discoideum cDNA clone:dds16h23, 5' ... 852 0.0 3
(BJ389457) Dictyostelium discoideum cDNA clone:dds18g23, 5' ... 839 0.0 2
(AU062123) Dictyostelium discoideum slug cDNA, clone SLH687. 821 0.0 4
(BJ388940) Dictyostelium discoideum cDNA clone:dds16h24, 5' ... 795 0.0 4
(BJ414690) Dictyostelium discoideum cDNA clone:ddv20j03, 5' ... 767 0.0 3
(BJ410922) Dictyostelium discoideum cDNA clone:ddv2i08, 5' e... 854 0.0 3
(BJ323693) Dictyostelium discoideum cDNA clone:dda11f21, 5' ... 880 0.0 2
(BJ362537) Dictyostelium discoideum cDNA clone:ddc22f10, 5' ... 860 0.0 2
(BJ411294) Dictyostelium discoideum cDNA clone:ddv3d22, 5' e... 759 0.0 3
(AU039388) Dictyostelium discoideum slug cDNA, clone SLH687. 948 0.0 1
(BJ414819) Dictyostelium discoideum cDNA clone:ddv20c14, 5' ... 482 0.0 4
(BJ417122) Dictyostelium discoideum cDNA clone:ddv29c17, 5' ... 856 0.0 2
(BJ417079) Dictyostelium discoideum cDNA clone:ddv29i07, 5' ... 829 0.0 2
(BJ409789) Dictyostelium discoideum cDNA clone:ddv10c06, 5' ... 854 0.0 1
(BJ387304) Dictyostelium discoideum cDNA clone:dds1a18, 5' e... 676 0.0 2
(AU037566) Dictyostelium discoideum slug cDNA, clone SSD793. 724 0.0 1
(BJ373200) Dictyostelium discoideum cDNA clone:ddc1l24, 3' e... 658 0.0 1
(BJ427912) Dictyostelium discoideum cDNA clone:ddv10c06, 3' ... 615 e-171 1
(BJ340141) Dictyostelium discoideum cDNA clone:dda11f21, 3' ... 597 e-166 1
(BJ326543) Dictyostelium discoideum cDNA clone:dda16k21, 5' ... 313 e-166 4
(BJ388465) Dictyostelium discoideum cDNA clone:dds9n13, 5' e... 541 e-149 1
(AU074487) Dictyostelium discoideum slug cDNA, clone SSK878. 476 e-129 1
(BJ359096) Dictyostelium discoideum cDNA clone:ddc12e20, 5' ... 299 1e-84 2
(BJ386737) Dictyostelium discoideum cDNA clone:dds10l11, 5' ... 172 7e-61 4
(BJ436024) Dictyostelium discoideum cDNA clone:ddv29c17, 3' ... 163 3e-50 2
(CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen... 36 0.006 18
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.016 22
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.028 20
(DH710562) Rattus norvegicus DNA, BAC clone: RNB1-274C19, 3'... 52 0.052 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 38 0.092 21
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 38 0.100 21
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.13 10
(CP000727) Clostridium botulinum A str. Hall, complete genome. 38 0.15 20
(CT030177) M.truncatula DNA sequence from clone MTH2-154J16 ... 38 0.18 8
(AM483827) Vitis vinifera contig VV78X169845.22, whole genom... 46 0.20 2
(CI209453) Oryza sativa Japonica Group cDNA, clone: 038-M039... 50 0.21 1
(BJ394047) Dictyostelium discoideum cDNA clone:dds33h17, 5' ... 50 0.21 1
(EJ398531) 1093012019092 Global-Ocean-Sampling_GS-28-01-01-1... 42 0.22 2
(AC138062) Homo sapiens 12 BAC RP11-76D21 (Roswell Park Canc... 42 0.25 2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 30 0.27 13
(AC146553) Medicago truncatula clone mth2-9e24, complete seq... 38 0.27 8
(AM437214) Vitis vinifera contig VV78X195020.14, whole genom... 40 0.31 3
(AL844509) Plasmodium falciparum chromosome 13. 34 0.32 19
(DQ366730) Uncultured Prochlorococcus marinus clone HOT0M-10... 36 0.38 5
(AC150001) Strongylocentrotus purpuratus clone R3-60F6, WORK... 36 0.41 6
(AP007380) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 0.42 3
(AC114107) Rattus norvegicus clone CH230-23I11, *** SEQUENCI... 38 0.44 2
(AC118396) Rattus norvegicus clone CH230-112E22, WORKING DRA... 38 0.44 2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 32 0.61 8
(EJ933828) 1093018818653 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.66 3
(AC150515) Bos taurus BAC CH240-118E9 (Children's Hospital ... 38 0.67 4
(BJ416228) Dictyostelium discoideum cDNA clone:ddv25k08, 5' ... 36 0.69 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.77 8
(AC026780) Homo sapiens chromosome 5 clone CTC-529L17, compl... 42 0.81 6
(DI155197) lawsonia intracellularis subunit vaccines. 48 0.81 1
(DD307807) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 48 0.81 1
(DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 48 0.81 1
(DD303257) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 48 0.81 1
(CS138801) Sequence 1 from Patent WO2005070958. 48 0.81 1
(AC173670) Bos taurus clone CH240-186B23, WORKING DRAFT SEQU... 48 0.81 1
(AC169614) Bos taurus clone CH240-191O1, WORKING DRAFT SEQUE... 48 0.81 1
(DX558521) GH_MBb0087D20f GH_MBb Gossypium hirsutum genomic ... 48 0.81 1
(CJ439135) Macaca fascicularis mRNA, clone: QccE-16388, 5' e... 48 0.81 1
(CI032863) Oryza sativa Japonica Group cDNA, clone: 009-M103... 48 0.81 1
(CI029711) Oryza sativa Japonica Group cDNA, clone: 009-M067... 48 0.81 1
(CI024267) Oryza sativa Japonica Group cDNA, clone: 009-M005... 48 0.81 1
(AM180252) Lawsonia intracellularis PHE/MN1-00. 48 0.81 1
(AE017263) Mesoplasma florum L1 complete genome. 34 0.82 22
(CI209525) Oryza sativa Japonica Group cDNA, clone: 038-M040... 34 0.86 3
(CJ468987) Macaca fascicularis mRNA, clone: QnpA-18953, 5' e... 38 0.89 2
(DU949209) 213794 Tomato MboI BAC Library Solanum lycopersic... 40 1.0 2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 1.3 17
(AY380826) Lymphocystis disease virus - isolate China, compl... 34 1.3 12
(AR546470) Sequence 1601 from patent US 6747137. 42 1.4 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 1.6 17
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 32 1.7 20
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 1.7 18
(AC178464) Strongylocentrotus purpuratus clone R3-113D23, WO... 42 1.8 6
(EK340190) 1095467059084 Global-Ocean-Sampling_GS-31-01-01-1... 30 2.1 4
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 38 2.2 15
(AZ345007) 1M0079B19F Mouse 10kb plasmid UUGC1M library Mus ... 44 2.2 2
(AL844507) Plasmodium falciparum chromosome 8. 32 2.3 20
(BJ424663) Dictyostelium discoideum cDNA clone:ddv53l05, 5' ... 40 2.4 2
(AC149862) Papio anubis clone RP41-437F19, WORKING DRAFT SEQ... 40 2.4 6
(EK445086) 1095467025844 Global-Ocean-Sampling_GS-32-01-01-1... 30 2.5 4
(BJ370330) Dictyostelium discoideum cDNA clone:ddc53b21, 5' ... 42 2.5 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 2.7 21
(EK466918) 1095469427635 Global-Ocean-Sampling_GS-32-01-01-1... 34 2.8 3
(EK562950) 1095521019502 Global-Ocean-Sampling_GS-32-01-01-1... 30 2.8 4
(AM460977) Vitis vinifera contig VV78X194429.9, whole genome... 46 3.2 1

>(BJ397963) Dictyostelium discoideum cDNA clone:dds10l11, 3' end,
single read.
Length = 775

Score = 1407 bits (710), Expect(2) = 0.0
Identities = 710/710 (100%)
Strand = Plus / Minus


Query: 475 gaattagcaaaagaagaattacaaggagtcactggtttagatacaattgtttattcttca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaattagcaaaagaagaattacaaggagtcactggtttagatacaattgtttattcttca 716


Query: 535 ttttatcgtgtttcaactgattatcatatggcaaagagtcaagcaagtgaattttataaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttttatcgtgtttcaactgattatcatatggcaaagagtcaagcaagtgaattttataaa 656


Query: 595 aatgctttaatgtacttatcatactgtaaattagaaacaatctctcaagaagaacaagca 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatgctttaatgtacttatcatactgtaaattagaaacaatctctcaagaagaacaagca 596


Query: 655 agtcttgcttataatttatgtattgccgctttagttggtgaaaatgtttatggttttggt 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agtcttgcttataatttatgtattgccgctttagttggtgaaaatgtttatggttttggt 536


Query: 715 gatttaattgcaaatccaattcttaaagcattagaaggatcacaacataattggttaatt 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatttaattgcaaatccaattcttaaagcattagaaggatcacaacataattggttaatt 476


Query: 775 gcatttttaaaggcattcaatattggtgatattcaacaatttgaaggattaatgtcacaa 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gcatttttaaaggcattcaatattggtgatattcaacaatttgaaggattaatgtcacaa 416


Query: 835 catcgtgatattatttcaacacaaactgcaatcacaaataatatgcaaaaattaagacaa 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 catcgtgatattatttcaacacaaactgcaatcacaaataatatgcaaaaattaagacaa 356


Query: 895 aagatatcgattctctctttgttagaattggcttttagaacaccatctgacaagagatca 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aagatatcgattctctctttgttagaattggcttttagaacaccatctgacaagagatca 296


Query: 955 atttcattttcaaagattgctcaagccactaaattaccattaggtgagattgaacatctt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atttcattttcaaagattgctcaagccactaaattaccattaggtgagattgaacatctt 236


Query: 1015 ttaatgaaatcactttcattaaatttgatcaaaggttcaatcgatcaaactgttgaaatc 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttaatgaaatcactttcattaaatttgatcaaaggttcaatcgatcaaactgttgaaatc 176


Query: 1075 attcacatcacttgggtcactccaagaattttagatcttaatcaaatcaattcaatgaat 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 attcacatcacttgggtcactccaagaattttagatcttaatcaaatcaattcaatgaat 116


Query: 1135 aatagaatcgctgaatggactgaaaaagcaaaaacttctttaagattagt 1184
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 aatagaatcgctgaatggactgaaaaagcaaaaacttctttaagattagt 66

Score = 30.2 bits (15), Expect(2) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1185 tgaagatgatactgt 1199
|||||||||||||||
Sbjct: 66 tgaagatgatactgt 52

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,695,811,669
Number of extensions: 110436333
Number of successful extensions: 9458454
Number of sequences better than 10.0: 233
Length of query: 1254
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1230
Effective length of database: 97,308,875,965
Effective search space: 119689917436950
Effective search space used: 119689917436950
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 5
Homology vs Protein
Query= Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Contig-U12917-1Q.Seq.d
(1254 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subu... 751 0.0
AK117761_1(AK117761|pid:none) Arabidopsis thaliana At4g19006 mRN... 296 8e-79
BT039217_1(BT039217|pid:none) Zea mays full-length cDNA clone ZM... 285 2e-75
EU964603_1(EU964603|pid:none) Zea mays clone 280258 26S proteaso... 284 5e-75
EU961903_1(EU961903|pid:none) Zea mays clone 238965 26S proteaso... 283 9e-75
BT040556_1(BT040556|pid:none) Zea mays full-length cDNA clone ZM... 283 1e-74
EU974195_1(EU974195|pid:none) Zea mays clone 442631 26S proteaso... 280 1e-73
DQ226994_1(DQ226994|pid:none) Nicotiana benthamiana RPN9 mRNA, p... 270 1e-70
AY223111_1(AY223111|pid:none) Schistosoma japonicum clone ZZD137... 252 2e-65
AY811806_1(AY811806|pid:none) Schistosoma japonicum SJCHGC06237 ... 252 2e-65
BC049415_1(BC049415|pid:none) Danio rerio proteasome (prosome, m... 246 1e-63
CP001331_348(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 242 2e-62
(P84169) RecName: Full=26S proteasome non-ATPase regulatory subu... 241 3e-62
BC081154_1(BC081154|pid:none) Xenopus laevis MGC84231 protein, m... 240 7e-62
(B0BN93) RecName: Full=26S proteasome non-ATPase regulatory subu... 240 9e-62
AY891992_1(AY891992|pid:none) Synthetic construct Homo sapiens c... 239 1e-61
AB009398_1(AB009398|pid:none) Homo sapiens mRNA for 26S proteaso... 239 1e-61
(Q5E964) RecName: Full=26S proteasome non-ATPase regulatory subu... 239 2e-61
BT043856_1(BT043856|pid:none) Salmo salar clone HM4_2965 proteas... 239 2e-61
BT074801_1(BT074801|pid:none) Osmerus mordax clone omor-eva-508-... 238 3e-61
AK314733_1(AK314733|pid:none) Homo sapiens cDNA, FLJ95595, highl... 238 3e-61
AJ575131_1(AJ575131|pid:none) Aspergillus niger rpnI gene for pu... 238 3e-61
AB170074_1(AB170074|pid:none) Macaca fascicularis brain cDNA clo... 238 4e-61
BT082719_1(BT082719|pid:none) Anoplopoma fimbria clone afim-evh-... 236 1e-60
AK163017_1(AK163017|pid:none) Mus musculus 0 day neonate thymus ... 234 6e-60
CR382131_302(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 233 8e-60
BX088700_67(BX088700|pid:none) DNA centromeric region sequence f... 230 7e-59
AM920437_149(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 230 7e-59
AP007155_340(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 230 9e-59
BT076810_1(BT076810|pid:none) Caligus rogercresseyi clone crog-e... 229 2e-58
AB070262_1(AB070262|pid:none) Oryza sativa Japonica Group OsRPN9... 228 3e-58
AE017342_502(AE017342|pid:none) Cryptococcus neoformans var. neo... 222 3e-56
T24581(T24581) hypothetical protein T06D8.8 - Caenorhabditis ele... 221 6e-56
(Q9US13) RecName: Full=Probable 26S proteasome regulatory subuni... 216 1e-54
AE014297_3507(AE014297|pid:none) Drosophila melanogaster chromos... 214 7e-54
AK094775_1(AK094775|pid:none) Homo sapiens cDNA FLJ37456 fis, cl... 204 4e-51
AK295944_1(AK295944|pid:none) Homo sapiens cDNA FLJ53046 complet... 204 5e-51
CU928171_152(CU928171|pid:none) Kluyveromyces thermotolerans str... 200 1e-49
FJ915071_1(FJ915071|pid:none) Danio rerio proteasome 26S non-ATP... 183 1e-44
CR940353_261(CR940353|pid:none) Theileria annulata strain Ankara... 174 8e-42
FN392319_377(FN392319|pid:none) Pichia pastoris GS115 chromosome... 173 1e-41
CP000496_120(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 159 2e-37
FM992689_119(FM992689|pid:none) Candida dubliniensis CD36 chromo... 152 2e-35
AM055943_39(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA... 135 4e-30
AF107836_1(AF107836|pid:none) Homo sapiens clone PFTGT1-2 26S pr... 132 2e-29
EF576115_1(EF576115|pid:none) Oryza sativa (indica cultivar-grou... 128 5e-28
AM494956_144(AM494956|pid:none) Leishmania braziliensis chromoso... 125 3e-27
CT005258_118(CT005258|pid:none) Leishmania major strain Friedlin... 120 1e-25
EF215207_1(EF215207|pid:none) Callithrix jacchus clone K13-52.1_... 99 2e-19
BT024259_1(BT024259|pid:none) Drosophila melanogaster IP15827 fu... 63 3e-08
(Q54KZ8) RecName: Full=Eukaryotic translation initiation factor ... 59 5e-07
CR940353_360(CR940353|pid:none) Theileria annulata strain Ankara... 56 2e-06
(Q5B5C1) RecName: Full=Eukaryotic translation initiation factor ... 54 9e-06
(A7SPX9) RecName: Full=Eukaryotic translation initiation factor ... 54 1e-05
AE017349_315(AE017349|pid:none) Cryptococcus neoformans var. neo... 52 4e-05
CP001327_160(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 50 2e-04
DQ440395_1(DQ440395|pid:none) Aedes aegypti clone AET-529 COP9 s... 49 3e-04
(B4P6M6) RecName: Full=Eukaryotic translation initiation factor ... 49 3e-04
EU969436_1(EU969436|pid:none) Zea mays clone 330210 COP9 signalo... 49 5e-04
(B3NRC6) RecName: Full=Eukaryotic translation initiation factor ... 49 5e-04
(Q0UXJ7) RecName: Full=Eukaryotic translation initiation factor ... 48 6e-04
(Q94899) RecName: Full=COP9 signalosome complex subunit 2; ... 48 8e-04
BT047127_1(BT047127|pid:none) Salmo salar clone ssal-rgb2-504-16... 48 8e-04
AP004051_2(AP004051|pid:none) Oryza sativa Japonica Group genomi... 47 0.001
FB863367_1(FB863367|pid:none) Sequence 82640 from Patent WO20080... 47 0.001
(B4HR14) RecName: Full=Eukaryotic translation initiation factor ... 47 0.002
(Q7ZYU8) RecName: Full=Eukaryotic translation initiation factor ... 46 0.002
BC059697_1(BC059697|pid:none) Danio rerio COP9 constitutive phot... 46 0.002
DQ235192_1(DQ235192|pid:none) Solanum tuberosum clone 167F07 unk... 46 0.003
(Q292F0) RecName: Full=Eukaryotic translation initiation factor ... 45 0.005
AY398350_1(AY398350|pid:none) Danio rerio clone RK111A2F06 dendr... 45 0.005
(B4GDM5) RecName: Full=Eukaryotic translation initiation factor ... 45 0.005
FN357353_17(FN357353|pid:none) Schistosoma mansoni genome sequen... 45 0.007
CR854996_7(CR854996|pid:none) Oryza sativa genomic DNA, chromoso... 45 0.007
FJ502068_1(FJ502068|pid:none) Aristichthys nobilis clone A146 Co... 45 0.007
(B3MCZ5) RecName: Full=Eukaryotic translation initiation factor ... 44 0.009
BT076863_1(BT076863|pid:none) Caligus rogercresseyi clone crog-e... 44 0.012
AK342420_1(AK342420|pid:none) Acyrthosiphon pisum ACYPI001319 mR... 44 0.012
(B0WTN3) RecName: Full=Eukaryotic translation initiation factor ... 44 0.012
(Q9UUJ7) RecName: Full=COP9 signalosome complex subunit 7; &AL1... 44 0.016
CR954201_330(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 44 0.016
(Q5DHT6) RecName: Full=Eukaryotic translation initiation factor ... 44 0.016
(Q7Q068) RecName: Full=Eukaryotic translation initiation factor ... 44 0.016
AJ720533_1(AJ720533|pid:none) Gallus gallus mRNA for hypothetica... 43 0.021
(Q55BD5) RecName: Full=COP9 signalosome complex subunit 7; ... 43 0.021
(B4KT65) RecName: Full=Eukaryotic translation initiation factor ... 43 0.027
AF071317_1(AF071317|pid:none) Mus musculus COP9 complex subunit ... 42 0.035
(Q5ZJ64) RecName: Full=Eukaryotic translation initiation factor ... 42 0.035
FB863381_1(FB863381|pid:none) Sequence 82654 from Patent WO20080... 42 0.035
CP000592_168(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.046
AK222564_1(AK222564|pid:none) Homo sapiens mRNA for dendritic ce... 42 0.046
AK227983_1(AK227983|pid:none) Arabidopsis thaliana mRNA for hypo... 42 0.061
(Q7L2H7) RecName: Full=Eukaryotic translation initiation factor ... 41 0.079
(Q99JX4) RecName: Full=Eukaryotic translation initiation factor ... 41 0.079
AL606494_8(AL606494|pid:none) Mouse DNA sequence from clone RP23... 41 0.079
AK304378_1(AK304378|pid:none) Homo sapiens cDNA FLJ54904 complet... 41 0.079
FN357341_58(FN357341|pid:none) Schistosoma mansoni genome sequen... 41 0.079
(Q5R8C4) RecName: Full=Eukaryotic translation initiation factor ... 41 0.079
BC012659_1(BC012659|pid:none) Mus musculus COP9 (constitutive ph... 41 0.079
(Q9H9Q2) RecName: Full=COP9 signalosome complex subunit 7b; ... 41 0.10
BC091493_1(BC091493|pid:none) Homo sapiens COP9 constitutive pho... 41 0.10
BT033449_1(BT033449|pid:none) Zea mays full-length cDNA clone ZM... 41 0.10
(Q8BV13) RecName: Full=COP9 signalosome complex subunit 7b; ... 41 0.10
(Q2KI56) RecName: Full=COP9 signalosome complex subunit 7b; ... 41 0.10
AK170140_1(AK170140|pid:none) Mus musculus NOD-derived CD11c +ve... 40 0.13
AF277183_1(AF277183|pid:none) Homo sapiens PNAS-125 mRNA, comple... 40 0.18
AM260522_1524(AM260522|pid:none) Helicobacter acinonychis str. S... 39 0.30
AY062722_1(AY062722|pid:none) Arabidopsis thaliana Unknown prote... 39 0.39
AE001439_15(AE001439|pid:none) Helicobacter pylori J99, complete... 39 0.39
CP000771_697(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 39 0.39
CP001173_16(CP001173|pid:none) Helicobacter pylori G27, complete... 39 0.51
CP001574_241(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 39 0.51
CP000241_18(CP000241|pid:none) Helicobacter pylori HPAG1, comple... 39 0.51
CP001072_16(CP001072|pid:none) Helicobacter pylori Shi470, compl... 39 0.51
AF064603_1(AF064603|pid:none) Homo sapiens GA17 protein mRNA, co... 38 0.67
BT012433_1(BT012433|pid:none) Drosophila melanogaster RH63621 fu... 38 0.67
CT010477_1(CT010477|pid:none) Mouse DNA sequence from clone RP23... 38 0.67
(Q5IR70) RecName: Full=Cancer-associated gene 1 protein homolog;... 38 0.67
BC093015_1(BC093015|pid:none) Homo sapiens COP9 constitutive pho... 38 0.87
AF193844_1(AF193844|pid:none) Homo sapiens COP9 complex subunit ... 38 0.87
EF678701_1(EF678701|pid:none) Picea sitchensis clone WS0294_G09 ... 38 0.87
(Q9CZ04) RecName: Full=COP9 signalosome complex subunit 7a; ... 38 0.87
CP001217_15(CP001217|pid:none) Helicobacter pylori P12, complete... 38 0.87
BC153238_1(BC153238|pid:none) Bos taurus COP9 constitutive photo... 38 0.87
BX936400_6(BX936400|pid:none) Yersinia pseudotuberculosis IP3295... 38 0.87
AK001318_1(AK001318|pid:none) Homo sapiens cDNA FLJ10456 fis, cl... 38 0.87
(Q5R762) RecName: Full=COP9 signalosome complex subunit 7a; ... 38 0.87
EF678031_1(EF678031|pid:none) Picea sitchensis clone WS0281_M23 ... 38 0.87
(O01422) RecName: Full=COP9 signalosome complex subunit 2; ... 37 1.1
FN318118_1(FN318118|pid:none) Schistosoma japonicum isolate Anhu... 37 1.1
AK013155_1(AK013155|pid:none) Mus musculus 10, 11 days embryo wh... 37 1.1
BT073009_1(BT073009|pid:none) Oncorhynchus mykiss clone omyk-evn... 37 1.5
(P40961) RecName: Full=Prohibitin-1; &AY558096_1(AY558096|pid:n... 37 1.5
AK019122_1(AK019122|pid:none) Mus musculus ES cells cDNA, RIKEN ... 37 1.5
U16737_1(U16737|pid:none) Saccharomyces cerevisiae prohibitin (P... 37 1.5
BT048555_1(BT048555|pid:none) Salmo salar clone ssal-rgb2-643-26... 37 1.5
CU633865_198(CU633865|pid:none) Podospora anserina genomic DNA c... 37 1.5
FN357329_20(FN357329|pid:none) Schistosoma mansoni genome sequen... 37 1.9
AK098334_1(AK098334|pid:none) Homo sapiens cDNA FLJ41015 fis, cl... 37 1.9
(Q4UJX3) RecName: Full=Ferredoxin; &CP000053_1315(CP000053|pid:... 37 1.9
(Q9BXT5) RecName: Full=Testis-expressed sequence 15 protein; Alt... 36 2.5
CP000867_71(CP000867|pid:none) Methanococcus maripaludis C6, com... 36 2.5
BC140934_1(BC140934|pid:none) Homo sapiens testis expressed 15, ... 36 2.5
FN314222_1(FN314222|pid:none) Schistosoma japonicum isolate Anhu... 36 2.5
CP000237_3(CP000237|pid:none) Neorickettsia sennetsu strain Miya... 36 2.5
AY814199_1(AY814199|pid:none) Schistosoma japonicum SJCHGC06488 ... 36 2.5
CP000847_1172(CP000847|pid:none) Rickettsia akari str. Hartford,... 36 2.5
CP001229_1338(CP001229|pid:none) Sulfurihydrogenibium azorense A... 36 3.3
CP000435_554(CP000435|pid:none) Synechococcus sp. CC9311, comple... 36 3.3
BT043761_1(BT043761|pid:none) Salmo salar clone HM6_1089 eukaryo... 36 3.3
FB863365_1(FB863365|pid:none) Sequence 82638 from Patent WO20080... 35 4.3
AM910996_359(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 4.3
CP001322_502(CP001322|pid:none) Desulfatibacillum alkenivorans A... 35 4.3
BT077002_1(BT077002|pid:none) Caligus rogercresseyi clone crog-e... 35 5.7
AE014298_2261(AE014298|pid:none) Drosophila melanogaster chromos... 35 5.7
AP009552_3992(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 5.7
EF147928_1(EF147928|pid:none) Populus trichocarpa clone WS0126_A... 35 5.7
AE014298_2260(AE014298|pid:none) Drosophila melanogaster chromos... 35 5.7
CR382139_1094(CR382139|pid:none) Debaryomyces hansenii chromosom... 35 7.4
CP001217_401(CP001217|pid:none) Helicobacter pylori P12, complet... 35 7.4
CP001072_403(CP001072|pid:none) Helicobacter pylori Shi470, comp... 35 7.4
A59065_1(A59065|pid:none) Sequence 6 from Patent EP0752473. &CS... 35 7.4
AF348915_1(AF348915|pid:none) Nitella opaca enolase (eno) gene, ... 35 7.4
FN357551_18(FN357551|pid:none) Schistosoma mansoni genome sequen... 35 7.4
CR382134_616(CR382134|pid:none) Debaryomyces hansenii strain CBS... 35 7.4
CP000123_477(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 7.4
AF348914_1(AF348914|pid:none) Chara corallina enolase (eno) gene... 35 7.4
AM260522_1037(AM260522|pid:none) Helicobacter acinonychis str. S... 35 7.4
CP000077_580(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 35 7.4
AB060239_1(AB060239|pid:none) Macaca fascicularis brain cDNA clo... 34 9.7
CP000246_2424(CP000246|pid:none) Clostridium perfringens ATCC 13... 34 9.7
(Q8C9S4) RecName: Full=Uncharacterized protein C10orf118 homolog... 34 9.7
CP001615_817(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 34 9.7

>(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subunit
13; AltName: Full=26S proteasome regulatory subunit S11;
Length = 385

Score = 751 bits (1938), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Frame = +1

Query: 58 MATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFN 237
MATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFN
Sbjct: 1 MATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFN 60

Query: 238 FYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIA 417
FYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIA
Sbjct: 61 FYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIA 120

Query: 418 NMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKN 597
NMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKN
Sbjct: 121 NMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKN 180

Query: 598 ALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIA 777
ALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIA
Sbjct: 181 ALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIA 240

Query: 778 FLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSI 957
FLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSI
Sbjct: 241 FLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSI 300

Query: 958 SFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNN 1137
SFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNN
Sbjct: 301 SFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNN 360

Query: 1138 RIAEWTEKAKTSLRLVEDDTVDLVA 1212
RIAEWTEKAKTSLRLVEDDTVDLVA
Sbjct: 361 RIAEWTEKAKTSLRLVEDDTVDLVA 385

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,757,315,480
Number of extensions: 31890053
Number of successful extensions: 86481
Number of sequences better than 10.0: 173
Number of HSP's gapped: 86305
Number of HSP's successfully gapped: 173
Length of query: 418
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 287
Effective length of database: 627,191,635
Effective search space: 180003999245
Effective search space used: 180003999245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.88 gvh: 0.18 alm: 0.41 top: 0.67 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U12917-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 8
AH (FL, L) 0
AF (FL, S) 3
SL (DIR, L) 1
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 6
CH (FL, L) 1
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0