>Contig-U12914-1 (Contig-U12914-1Q) /CSM_Contig/Contig-U12914-1Q.Seq.d
TCAAATTAGTACAATTGAAAGACTAACTTTGGAGAATAAAAAAGAAATTC
AATCAAATGCCCAAGAGAAAATAAAAGAGATAAGTTCAATGATTGATAAA
CTTATCGACCCCTTATTGAAAAATATAGATGGGTTAACAAATAAATTTAC
TGAAAAAAATGTTAATGATGAAGAATTAAAAAAGAAAATCGATGTTTTTT
TTGAAAAACTCCAAAAAACTATTTCAAGGAATTGATAAAGCAGAAAAGTC
TCAATTTCTTACCAAGTTCTCATCTTTGTTTGGGGTAATATCAGGATTTT
TAGGAATTGGTAGTGTAACTGCGATTGGAGCTACTGAAGCTGTTGGTGTC
ACGTCTCTGATCGCTGTAGGAGCCACTTCACTATCAGTTGTTGCGCCTAT
TTGTGCTCCAGTACTTTTAACATTTGGTTGCCTTGTTGGTGCTTTTATTT
CATTTTACAAGCAATCAGTAGCAAGAGATAAAAAAAATTGAAAACTTTAA
AATCTCTTCTTTCCTATTATATGGAAAATATAGAACTAATCTCCCAAGTA
ACTGATGAAACAACAAAATTAATATATCATGAATTAAAAGAGAAGGTTCT
TGAATTCAAAAAGTTGGAAGCAAATTTAAAAATTGATTTTGATTTATCTC
CTATCAAAGATCAATTTAAATCAATTACTTCAAAACAAAATTTAATTAAA
GACAAAGTTGAAGAAATTGCAAATTATCAATTAGATTTAATCCAAGAATG
TCAAAAATTAAAAAAAAAATCTCTAAAAAATAAAACAATAAATAAAAAAT
AGAAATAAAATTTTAAAAATGAAAAAAAA

est1=CFF664Z,1,653
est2=CFF256Z,116,638
est3=CFH142Z,126,684
est4=SFJ165Z,132,664
est5=SFL434Z,137,648
est6=CFB739Z,140,700
est7=CHB105Z,141,716
est8=CFH722Z,148,656
est9=SFL168Z,159,684
est10=CHD365Z,173,685
est11=CHB823Z,175,653
est12=CHA378Z,190,694
est13=SSF672Z,256,829
est14=CFD518Z,342,713
est15=SFH860Z,360,659

qistierltlenkkeiqsnaqekikeissmidklidpllknidgltnkfteknvndeelk
kkidvffeklqktisrn**srkvsisyqvlifvwgnirifrnw*cncdwsy*scwchvsd
rcrshftisccaylcsstfniwlpcwcfyfilqaisskr*KKLKTLKSLLSYYMENIELI
SQVTDETTKLIYHELKEKVLEFKKLEANLKIDFDLSPIKDQFKSITSKQNLIKDKVEEIA
NYQLDLIQECQKLKKKSLKNKTINKK*k*nfknekk

Frame A:
sn*yn*ktnfge*krnsikcprenkrdkfnd**tyrpliekyrwvnk*iy*kkc***rik
kenrcff*ktpknyfkelikqkslnflpsshlclg*yqdf*elvv*lrlellkllvsrl*
sl*eplhyqllrlfvlqyf*hlvallvllfhftsnq*qeikkienfkissfllygkyrtn
lpsn**nnkinis*ikregs*iqkvgskfkn*f*fisyqrsi*inyfktkfn*rqs*rnc
klsirfnprmskikkkiskk*nnk*kieikf*k*kk


Frame B:
qistierltlenkkeiqsnaqekikeissmidklidpllknidgltnkfteknvndeelk
kkidvffeklqktisrn**srkvsisyqvlifvwgnirifrnw*cncdwsy*scwchvsd
rcrshftisccaylcsstfniwlpcwcfyfilqaisskr*KKLKTLKSLLSYYMENIELI
SQVTDETTKLIYHELKEKVLEFKKLEANLKIDFDLSPIKDQFKSITSKQNLIKDKVEEIA
NYQLDLIQECQKLKKKSLKNKTINKK*k*nfknekk


Frame C:
klvqlkd*lwrikkkfnqmpkrk*kr*vq*linlstpy*ki*mg*qinllkkmlmmkn*k
rksmfflknskklfqgidkaeksqfltkfsslfgvisgflgigsvtaigateavgvtsli
avgatslsvvapicapvlltfgclvgafisfykqsvardkkn*kl*nlffpiiwki*n*s
pk*lmkqqn*yimn*krrflnskswkqi*kliliyllskinlnqllqnki*lktklkklq
iin*i*sknvkn*kknl*kikq*iknrnkilkmkk

Query= Contig-U12914-1 (Contig-U12914-1Q)
/CSM_Contig/Contig-U12914-1Q.Seq.d
         (829 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12914-1 (Contig-U12914-1Q) /CSM_Contig/Conti...  1354  0.0
Contig-U10410-1 (Contig-U10410-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12055-1 (Contig-U12055-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12375-1 (Contig-U12375-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U12155-1 (Contig-U12155-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U12131-1 (Contig-U12131-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U07046-1 (Contig-U07046-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U01683-1 (Contig-U01683-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U13139-1 (Contig-U13139-1Q) /CSM_Contig/Conti...    30  3.6

>Contig-U12914-1 (Contig-U12914-1Q) /CSM_Contig/Contig-U12914-1Q.Seq.d
          Length = 829

 Score = 1354 bits (683), Expect = 0.0
 Identities = 729/752 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaattagtacaattgaaagactaactttggagaataaaaaagaaattcaatcaaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcaaattagtacaattgaaagactaactttggagaataaaaaagaaattcaatcaaatgc 60

                                                                       
Query: 61  ccaagagaaaataaaagagataagttcaatgattgataaacttatcgaccccttattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccaagagaaaataaaagagataagttcaatgattgataaacttatcgaccccttattgaa 120

                                                                       
Query: 121 aaatatagatgggttaacaaataaatttactgnnnnnnntgttaatgatgaagaattaaa 180
           ||||||||||||||||||||||||||||||||       |||||||||||||||||||||
Sbjct: 121 aaatatagatgggttaacaaataaatttactgaaaaaaatgttaatgatgaagaattaaa 180

                                                                       
Query: 181 aaagaaaatcgatgnnnnnnnngaaaaactccaaaaaactatttcaaggaattgataaag 240
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagaaaatcgatgttttttttgaaaaactccaaaaaactatttcaaggaattgataaag 240

                                                                       
Query: 241 cagaaaagtctcaatttcttaccaagttctcatctttgtttggggtaatatcaggatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagaaaagtctcaatttcttaccaagttctcatctttgtttggggtaatatcaggatttt 300

                                                                       
Query: 301 taggaattggtagtgtaactgcgattggagctactgaagctgttggtgtcacgtctctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taggaattggtagtgtaactgcgattggagctactgaagctgttggtgtcacgtctctga 360

                                                                       
Query: 361 tcgctgtaggagccacttcactatcagttgttgcgcctatttgtgctccagtacttttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcgctgtaggagccacttcactatcagttgttgcgcctatttgtgctccagtacttttaa 420

                                                                       
Query: 421 catttggttgccttgttggtgcttttatttcattttacaagcaatcagtagcaagagatn 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 421 catttggttgccttgttggtgcttttatttcattttacaagcaatcagtagcaagagata 480

                                                                       
Query: 481 nnnnnnnttgaaaactttaaaatctcttctttcctattatatggaaaatatagaactaat 540
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaaaattgaaaactttaaaatctcttctttcctattatatggaaaatatagaactaat 540

                                                                       
Query: 541 ctcccaagtaactgatgaaacaacaaaattaatatatcatgaattaaaagagaaggttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctcccaagtaactgatgaaacaacaaaattaatatatcatgaattaaaagagaaggttct 600

                                                                       
Query: 601 tgaattcaaaaagttggaagcaaatttaaaaattgattttgatttatctcctatcaaaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgaattcaaaaagttggaagcaaatttaaaaattgattttgatttatctcctatcaaaga 660

                                                                       
Query: 661 tcaatttaaatcaattacttcaaaacaaaatttaattaaagacaaagttgaagaaattgc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcaatttaaatcaattacttcaaaacaaaatttaattaaagacaaagttgaagaaattgc 720

                                           
Query: 721 aaattatcaattagatttaatccaagaatgtc 752
           ||||||||||||||||||||||||||||||||
Sbjct: 721 aaattatcaattagatttaatccaagaatgtc 752


>Contig-U10410-1 (Contig-U10410-1Q) /CSM_Contig/Contig-U10410-1Q.Seq.d
          Length = 1100

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 694 aattaaagacaaagttgaagaaatt 718
           ||||||||| |||||||||||||||
Sbjct: 129 aattaaagaaaaagttgaagaaatt 153


 Score = 30.2 bits (15), Expect = 3.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 704 aaagttgaagaaatt 718
           |||||||||||||||
Sbjct: 118 aaagttgaagaaatt 132


>Contig-U12055-1 (Contig-U12055-1Q) /CSM_Contig/Contig-U12055-1Q.Seq.d
          Length = 1469

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 169  tgaagaattaaaaaagaaa 187
            |||||||||||||||||||
Sbjct: 1139 tgaagaattaaaaaagaaa 1157


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,255
Number of Sequences: 6905
Number of extensions: 15255
Number of successful extensions: 1778
Number of sequences better than 10.0: 209
length of query: 829
length of database: 5,674,871
effective HSP length: 16
effective length of query: 813
effective length of database: 5,564,391
effective search space: 4523849883
effective search space used: 4523849883
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U12914-1 (Contig-U12914-1Q) /CSM_Contig/Contig-U12914-1Q.Seq.d
         (829 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...   545   0.0    4
(BJ372457) Dictyostelium discoideum cDNA clone:ddc12o16, 3' ...   545   0.0    4
(BJ377567) Dictyostelium discoideum cDNA clone:ddc24i01, 3' ...   545   0.0    3
(BJ373673) Dictyostelium discoideum cDNA clone:ddc4n09, 3' e...   549   0.0    3
(BJ372997) Dictyostelium discoideum cDNA clone:ddc15c11, 3' ...   545   0.0    4
(BJ401529) Dictyostelium discoideum cDNA clone:dds23g17, 3' ...   537   0.0    3
(BJ401816) Dictyostelium discoideum cDNA clone:dds19a17, 3' ...   545   0.0    4
(C92907) Dictyostelium discoideum slug cDNA, clone SSF672.        525   0.0    2
(BJ376432) Dictyostelium discoideum cDNA clone:ddc28b17, 3' ...   545   0.0    3
(BJ377184) Dictyostelium discoideum cDNA clone:ddc22l19, 3' ...   539   0.0    2
(BJ372211) Dictyostelium discoideum cDNA clone:ddc11o14, 3' ...   545   0.0    4
(BJ374758) Dictyostelium discoideum cDNA clone:ddc16l05, 3' ...   537   0.0    3
(BJ401448) Dictyostelium discoideum cDNA clone:dds23d10, 3' ...   537   0.0    4
(BJ377639) Dictyostelium discoideum cDNA clone:ddc25n06, 3' ...   545   0.0    3
(BJ374470) Dictyostelium discoideum cDNA clone:ddc8c05, 3' e...   450   0.0    2
(BJ402374) Dictyostelium discoideum cDNA clone:dds16h16, 3' ...   341   e-149  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.003  12
(AX344551) Sequence 2 from Patent WO0200932.                       40   0.026  10
(EJ163779) 1092344057975 Global-Ocean-Sampling_GS-27-01-01-1...    36   0.10   2
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   0.11   9
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    36   0.17   14
(AC016758) Homo sapiens BAC clone RP11-535E19 from 2, comple...    38   0.20   6
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   0.23   20
(CP000361) Arcobacter butzleri RM4018, complete genome.            32   0.31   17
(EJ043722) 1095454105069 Global-Ocean-Sampling_GS-26-01-01-1...    36   0.53   3
(DW281265) UI-S-GU0-adr-e-11-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW280559) UI-S-GU0-adp-g-01-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW280517) UI-S-GU0-ado-n-10-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW278184) UI-S-HH0-adg-p-07-0-UI.s1 UI-S-HH0 Euprymna scolo...    48   0.53   1
(DW276774) UI-S-GU0-acy-c-07-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW276334) UI-S-GU0-acy-b-12-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW276306) UI-S-GU0-acx-k-15-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW275626) UI-S-GU0-adc-m-10-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW275078) UI-S-GU0-ada-o-23-0-UI.s1 UI-S-GU0 Euprymna scolo...    48   0.53   1
(DW270807) UI-S-GS0-acg-j-16-0-UI.s1 UI-S-GS0 Euprymna scolo...    48   0.53   1
(DW269817) UI-S-GS0-aci-j-23-0-UI.s1 UI-S-GS0 Euprymna scolo...    48   0.53   1
(DW269049) UI-S-GS0-acd-k-08-0-UI.s1 UI-S-GS0 Euprymna scolo...    48   0.53   1
(DW267808) UI-S-GN1-aby-c-09-0-UI.s1 UI-S-GN1 Euprymna scolo...    48   0.53   1
(DW267317) UI-S-GN1-abx-d-19-0-UI.s1 UI-S-GN1 Euprymna scolo...    48   0.53   1
(DW267082) UI-S-GN1-abz-c-17-0-UI.s1 UI-S-GN1 Euprymna scolo...    48   0.53   1
(DW266673) UI-S-GN1-abw-d-21-0-UI.s1 UI-S-GN1 Euprymna scolo...    48   0.53   1
(DW266364) UI-S-GN1-abq-e-22-0-UI.s1 UI-S-GN1 Euprymna scolo...    48   0.53   1
(DW266071) UI-S-GN1-abv-m-11-0-UI.s1 UI-S-GN1 Euprymna scolo...    48   0.53   1
(DW262803) UI-S-GN0-abl-k-06-0-UI.s1 UI-S-GN0 Euprymna scolo...    48   0.53   1
(DW262505) UI-S-GN0-abj-m-10-0-UI.s1 UI-S-GN0 Euprymna scolo...    48   0.53   1
(DW261590) UI-S-GN0-abi-i-15-0-UI.s1 UI-S-GN0 Euprymna scolo...    48   0.53   1
(DW257185) UI-S-GG0-aas-j-23-0-UI.s1 UI-S-GG0 Euprymna scolo...    48   0.53   1
(DW252458) UI-S-GB0-aad-n-06-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW252363) UI-S-GB0-aad-h-21-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW252349) UI-S-GB0-aad-f-07-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW252266) UI-S-GB0-aad-c-14-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW252131) UI-S-GB0-aab-f-22-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW252053) UI-S-GB0-aab-d-21-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW252039) UI-S-GB0-aab-b-07-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW251939) UI-S-GB0-aab-i-17-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW251839) UI-S-GB0-aac-d-22-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW251564) UI-S-GB0-aaa-h-20-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(DW251349) UI-S-GB0-aaa-k-05-0-UI.s1 UI-S-GB0 Euprymna scolo...    48   0.53   1
(BW595255) Lotus japonicus cDNA, clone: LjCa-004-AC05, 5' en...    48   0.53   1
(AE017308) Mycoplasma mobile 163K complete genome.                 40   0.54   15
(EJ010724) 1095403697427 Global-Ocean-Sampling_GS-26-01-01-1...    34   0.57   3
(AB024038) Arabidopsis thaliana genomic DNA, chromosome 3, P...    38   0.57   6
(BX248583) Blochmannia floridanus complete genome.                 34   0.58   11
(AM651702) Entamoeba moshkovskii FIC GSS, clone mosh101b12.p1k.    40   0.66   3
(AC151029) Callithrix jacchus clone CH259-358P12, WORKING DR...    36   0.70   5
(EJ720764) 1092959449817 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.72   3
(AC151822) Medicago truncatula clone mth2-32h21, complete se...    38   0.77   7
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.82   12
(X04465) Marchantia polymorpha chloroplast genome DNA.             36   0.86   7
(AC195571) Medicago truncatula chromosome 7 BAC clone mth2-7...    32   0.91   7
(AL161723) Human DNA sequence from clone RP13-172P13 on chro...    34   0.91   7
(CP000029) Staphylococcus epidermidis RP62A, complete genome.      34   0.93   2
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g...    34   0.93   2
(AX145378) Sequence 4100 from Patent WO0134809.                    34   1.3    2
(AR486014) Sequence 4100 from patent US 6703492.                   34   1.3    2
(AF270060) Staphylococcus epidermidis strain SR1 clone step....    34   1.3    2
(EJ409211) 1093012123366 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.4    2
(BP512896) Hydra magnipapillata cDNA, clone:hmp_08810.             34   1.5    2
(EJ830121) 1093017577293 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.5    4
(EJ745719) 1092962059380 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.6    2
(EK229012) 1095460171765 Global-Ocean-Sampling_GS-31-01-01-1...    40   1.6    2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   1.6    10
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    34   1.7    17
(AC147877) Medicago truncatula clone mth2-9b13, complete seq...    38   1.7    5
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    36   1.7    10
(AL596173) Listeria innocua Clip11262 complete genome, segme...    34   1.7    9
(EJ772751) 1092973903067 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.7    2
(EJ810727) 1093017488109 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.7    4
(ER284400) 1092343533980 Global-Ocean-Sampling_GS-34-01-01-1...    36   1.7    2
(AC176202) Strongylocentrotus purpuratus clone R3-3005B8, WO...    38   1.8    3
(AC166330) Glycine max clone gmw1-52d1, complete sequence.         40   2.0    7
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    36   2.0    17
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   2.0    7
(CR354563) Zebrafish DNA sequence from clone DKEY-210I1 in l...    34   2.1    8
(AX344618) Sequence 43 from Patent WO0200927.                      46   2.1    1
(AC213934) Echinops telfairi clone CH238-474D19, WORKING DRA...    46   2.1    1
(AC167991) Bos taurus clone CH240-174M23, WORKING DRAFT SEQU...    46   2.1    1
(ER567971) 1093015778880 Global-Ocean-Sampling_GS-36-01-01-2...    46   2.1    1
(ER465947) 1092963922044 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.1    1
(ER413026) 1095388065310 Global-Ocean-Sampling_GS-34-01-01-1...    46   2.1    1

>(AC117176) Dictyostelium discoideum chromosome 2 map 5018074-5200947
             strain AX4, complete sequence.
          Length = 182871

 Score =  545 bits (275), Expect(4) = 0.0
 Identities = 275/275 (100%)
 Strand = Plus / Minus


Query: 205   aaaactccaaaaaactatttcaaggaattgataaagcagaaaagtctcaatttcttacca 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31446 aaaactccaaaaaactatttcaaggaattgataaagcagaaaagtctcaatttcttacca 31387


Query: 265   agttctcatctttgtttggggtaatatcaggatttttaggaattggtagtgtaactgcga 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31386 agttctcatctttgtttggggtaatatcaggatttttaggaattggtagtgtaactgcga 31327


Query: 325   ttggagctactgaagctgttggtgtcacgtctctgatcgctgtaggagccacttcactat 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31326 ttggagctactgaagctgttggtgtcacgtctctgatcgctgtaggagccacttcactat 31267


Query: 385   cagttgttgcgcctatttgtgctccagtacttttaacatttggttgccttgttggtgctt 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31266 cagttgttgcgcctatttgtgctccagtacttttaacatttggttgccttgttggtgctt 31207


Query: 445   ttatttcattttacaagcaatcagtagcaagagat 479
             |||||||||||||||||||||||||||||||||||
Sbjct: 31206 ttatttcattttacaagcaatcagtagcaagagat 31172

 Score =  525 bits (265), Expect(4) = 0.0
 Identities = 265/265 (100%)
 Strand = Plus / Minus


Query: 488   ttgaaaactttaaaatctcttctttcctattatatggaaaatatagaactaatctcccaa 547
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31165 ttgaaaactttaaaatctcttctttcctattatatggaaaatatagaactaatctcccaa 31106


Query: 548   gtaactgatgaaacaacaaaattaatatatcatgaattaaaagagaaggttcttgaattc 607
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31105 gtaactgatgaaacaacaaaattaatatatcatgaattaaaagagaaggttcttgaattc 31046


Query: 608   aaaaagttggaagcaaatttaaaaattgattttgatttatctcctatcaaagatcaattt 667
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31045 aaaaagttggaagcaaatttaaaaattgattttgatttatctcctatcaaagatcaattt 30986


Query: 668   aaatcaattacttcaaaacaaaatttaattaaagacaaagttgaagaaattgcaaattat 727
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30985 aaatcaattacttcaaaacaaaatttaattaaagacaaagttgaagaaattgcaaattat 30926


Query: 728   caattagatttaatccaagaatgtc 752
             |||||||||||||||||||||||||
Sbjct: 30925 caattagatttaatccaagaatgtc 30901

 Score =  293 bits (148), Expect(4) = 0.0
 Identities = 151/152 (99%)
 Strand = Plus / Minus


Query: 1     tcaaattagtacaattgaaagactaactttggagaataaaaaagaaattcaatcaaatgc 60
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31649 tcaaattagtacaattgaaagactaactttggagaataaaaaagaaattcaatcaaatga 31590


Query: 61    ccaagagaaaataaaagagataagttcaatgattgataaacttatcgaccccttattgaa 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31589 ccaagagaaaataaaagagataagttcaatgattgataaacttatcgaccccttattgaa 31530


Query: 121   aaatatagatgggttaacaaataaatttactg 152
             ||||||||||||||||||||||||||||||||
Sbjct: 31529 aaatatagatgggttaacaaataaatttactg 31498

 Score = 69.9 bits (35), Expect(4) = 0.0
 Identities = 35/35 (100%)
 Strand = Plus / Minus


Query: 160   tgttaatgatgaagaattaaaaaagaaaatcgatg 194
             |||||||||||||||||||||||||||||||||||
Sbjct: 31490 tgttaatgatgaagaattaaaaaagaaaatcgatg 31456

 Score = 32.2 bits (16), Expect(10) = 0.068
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 682    aaaacaaaatttaatt 697
              ||||||||||||||||
Sbjct: 123612 aaaacaaaatttaatt 123627

 Score = 32.2 bits (16), Expect(10) = 0.068
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 704    aaagttgaagaaattg 719
              ||||||||||||||||
Sbjct: 132264 aaagttgaagaaattg 132279

 Score = 30.2 bits (15), Expect(10) = 0.068
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 174   aattaaaaaagaaaa 188
             |||||||||||||||
Sbjct: 24780 aattaaaaaagaaaa 24794

 Score = 28.2 bits (14), Expect(10) = 0.068
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 63    aagagaaaataaaa 76
             ||||||||||||||
Sbjct: 11637 aagagaaaataaaa 11650

 Score = 28.2 bits (14), Expect(10) = 0.068
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 443   ttttatttcatttt 456
             ||||||||||||||
Sbjct: 50861 ttttatttcatttt 50874

 Score = 28.2 bits (14), Expect(10) = 0.068
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 488   ttgaaaactttaaa 501
             ||||||||||||||
Sbjct: 61183 ttgaaaactttaaa 61196

 Score = 28.2 bits (14), Expect(10) = 0.068
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 566    aaattaatatatca 579
              ||||||||||||||
Sbjct: 103894 aaattaatatatca 103907

 Score = 28.2 bits (14), Expect(10) = 0.068
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 662    caatttaaatcaat 675
              ||||||||||||||
Sbjct: 108762 caatttaaatcaat 108775

 Score = 26.3 bits (13), Expect(10) = 0.068
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 35   aataaaaaagaaa 47
            |||||||||||||
Sbjct: 2569 aataaaaaagaaa 2581

 Score = 26.3 bits (13), Expect(10) = 0.068
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 721    aaattatcaatta 733
              |||||||||||||
Sbjct: 173092 aaattatcaatta 173104

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,092,928,892
Number of extensions: 75660225
Number of successful extensions: 6815709
Number of sequences better than 10.0: 275
Length of query: 829
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 805
Effective length of database: 97,308,875,965
Effective search space: 78333645151825
Effective search space used: 78333645151825
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U12914-1 (Contig-U12914-1Q) /CSM_Contig/Contig-U12914-1Q.Seq.d
         (829 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU719189_16(EU719189|pid:none) Clostridium phage phiCD27, comple...    38   0.46
(A5DPN3) RecName: Full=Autophagy-related protein 11;                   37   0.60
AE000513_2387(AE000513|pid:none) Deinococcus radiodurans R1 chro...    37   1.0
BA000001_577(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c...    36   1.8
CP000716_1450(CP000716|pid:none) Thermosipho melanesiensis BI429...    36   1.8
AM406671_2145(AM406671|pid:none) Lactococcus lactis subsp. cremo...    35   2.3
EU287919_2(EU287919|pid:none) Streptococcus iniae strain QMA0076...    35   2.3
AE001362_187(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.3
AP007159_495(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    35   2.3
EU287920_2(EU287920|pid:none) Streptococcus iniae strain QMA0072...    35   2.3
CP001337_212(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    35   3.0
AE014133_1057(AE014133|pid:none) Streptococcus mutans UA159, com...    35   3.0
U29381_13(U29381|pid:none) Caenorhabditis elegans cosmid F35D11,...    35   3.0
AE017333_989(AE017333|pid:none) Bacillus licheniformis DSM 13, c...    35   3.0
BA000023_2073(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    35   3.0
T16270(T16270)hypothetical protein F35D11.11 - Caenorhabditis el...    35   3.0
U29381_12(U29381|pid:none) Caenorhabditis elegans cosmid F35D11,...    35   3.0
AE009441_1128(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    35   3.9
CP000686_3781(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    35   3.9
(Q54QC0) RecName: Full=Myb-like protein U;                             35   3.9
CP001399_2405(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    35   3.9
AE009951_80(AE009951|pid:none) Fusobacterium nucleatum subsp. nu...    34   5.1
CP000103_203(CP000103|pid:none) Nitrosospira multiformis ATCC 25...    34   5.1
CP000988_21(CP000988|pid:none) Borrelia duttonii Ly plasmid pl41...    34   5.1
AE005176_1923(AE005176|pid:none) Lactococcus lactis subsp. lacti...    34   5.1
L20422_1(L20422|pid:none) Human 14-3-3n protein mRNA, complete c...    34   5.1
CP001078_2265(CP001078|pid:none) Clostridium botulinum E3 str. A...    34   5.1
X57345_1(X57345|pid:none) H.sapiens mRNA for AS1 protein.              34   5.1
Z82248_4(Z82248|pid:none) Human DNA sequence from clone LL22NC03...    34   5.1
AB073701_27(AB073701|pid:none) Borrelia duttonii plasmid DNA, co...    34   5.1
CP000984_14(CP000984|pid:none) Borrelia duttonii Ly plasmid pl28...    34   5.1
AE000782_2006(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304...    34   5.1
S34756(S34756;S29339)14-3-3 protein eta chain - human                  34   5.1
BC102982_1(BC102982|pid:none) Bos taurus tyrosine 3-monooxygenas...    34   5.1
(P68509) RecName: Full=14-3-3 protein eta; AltName: Full=Protein...    34   5.1
AB169524_1(AB169524|pid:none) Macaca fascicularis brain cDNA, cl...    34   6.7
AE014299_2487(AE014299|pid:none) Shewanella oneidensis MR-1, com...    34   6.7
CP000511_3315(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1...    33   8.7
CP000390_2512(CP000390|pid:none) Mesorhizobium sp. BNC1, complet...    33   8.7
CP001114_2206(CP001114|pid:none) Deinococcus deserti VCD115, com...    33   8.7
CP000923_1531(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    33   8.7
CP000804_501(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    33   8.7
U64833_6(U64833|pid:none) Caenorhabditis elegans cosmid B0507, c...    33   8.7
CP001403_2524(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...    33   8.7
T25469(T25469)hypothetical protein B0507.8 - Caenorhabditis eleg...    33   8.7
CP001400_2270(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...    33   8.7
CP001344_3332(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    33   8.7

>EU719189_16(EU719189|pid:none) Clostridium phage phiCD27, complete
           genome.
          Length = 1429

 Score = 37.7 bits (86), Expect = 0.46
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
 Frame = +3

Query: 198 FLKNSKKLFQGIDKAEKSQFLTKFSSLFGVISGFLGIGSVTAIGATEAVGVTSLIAVGAT 377
           F+KN  K+        KS      S + GV++GF+   ++T I  +  + + + IA  +T
Sbjct: 568 FIKNFDKI--------KSVLQGVISIIGGVVAGFMAFKALTVI--SSVISIITKIATAST 617

Query: 378 SLSVVAPICAP---VLLTFGCLVGAFISFYKQS 467
            +  +  +  P   ++L  G L GAF+  Y++S
Sbjct: 618 LIGGIVGVLGPIGAIVLAIGMLAGAFLFAYQKS 650

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 914,620,105
Number of extensions: 14689899
Number of successful extensions: 64352
Number of sequences better than 10.0: 47
Number of HSP's gapped: 63968
Number of HSP's successfully gapped: 47
Length of query: 276
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 149
Effective length of database: 640,137,871
Effective search space: 95380542779
Effective search space used: 95380542779
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.76  gvh: 0.33  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U12914-1 is nuc