| Contig-U12907-1 |
| Contig ID |
Contig-U12907-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
2454 |
| Chromosome number (1..6, M) |
- |
| Chromosome length |
- |
| Start point |
- |
| End point |
- |
| Strand (PLUS/MINUS) |
- |
| Number of clones |
10 |
| Number of EST |
16 |
| Link to clone list |
U12907 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 4 |
| Homology vs DNA |
Query= Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Contig-U12907-1Q.Seq.d
(2454 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AF305417) Dictyostelium discoideum Aardvark (aar) mRNA, com... 2054 0.0 2
(BJ402885) Dictyostelium discoideum cDNA clone:dds18g14, 3' ... 1503 0.0 1
(BJ339696) Dictyostelium discoideum cDNA clone:dda10e05, 3' ... 1413 0.0 1
(BJ377644) Dictyostelium discoideum cDNA clone:ddc25p01, 3' ... 1374 0.0 1
(BJ377202) Dictyostelium discoideum cDNA clone:ddc22o24, 3' ... 1326 0.0 1
(BJ378881) Dictyostelium discoideum cDNA clone:ddc33j04, 3' ... 1233 0.0 1
(C92863) Dictyostelium discoideum slug cDNA, clone SSF518. 1193 0.0 1
(BJ385730) Dictyostelium discoideum cDNA clone:ddc55o23, 3' ... 1176 0.0 1
(BJ323320) Dictyostelium discoideum cDNA clone:dda10e05, 5' ... 630 0.0 2
(BJ362898) Dictyostelium discoideum cDNA clone:ddc23o24, 5' ... 630 0.0 3
(BJ363117) Dictyostelium discoideum cDNA clone:ddc25p01, 5' ... 611 0.0 2
(BJ363237) Dictyostelium discoideum cDNA clone:ddc25o14, 5' ... 565 0.0 2
(BJ389388) Dictyostelium discoideum cDNA clone:dds18g14, 5' ... 630 0.0 3
(BJ377744) Dictyostelium discoideum cDNA clone:ddc25o14, 3' ... 488 e-168 3
(AU072497) Dictyostelium discoideum slug cDNA, clone SSE722. 476 e-129 1
(BJ364827) Dictyostelium discoideum cDNA clone:ddc33j04, 5' ... 315 4e-81 1
(BJ370920) Dictyostelium discoideum cDNA clone:ddc55o23, 5' ... 68 2e-06 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 40 4e-04 14
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 0.001 12
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 40 0.002 15
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 34 0.006 16
(EK102117) 1092963024593 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.009 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.014 13
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 0.020 21
(CQ588035) Sequence 15793 from Patent WO0171042. 54 0.026 1
(BT016136) Drosophila melanogaster GH01148 full insert cDNA. 54 0.026 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 54 0.026 1
(AC093195) Drosophila melanogaster clone BACR16J09, complete... 54 0.026 1
(AC008329) Drosophila melanogaster, chromosome 2L, region 28... 54 0.026 1
(AC008328) Drosophila melanogaster clone BACR09A04, complete... 54 0.026 1
(AC004722) Drosophila melanogaster DNA sequence (P1 DS02760 ... 54 0.026 1
(AC014754) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 54 0.026 1
(CT030255) Mouse DNA sequence from clone RP23-267P22 on chro... 50 0.041 7
(Z98551) Plasmodium falciparum MAL3P6. 40 0.043 16
(AC139707) Medicago truncatula clone mth2-16b22, complete se... 40 0.047 7
(AM444089) Vitis vinifera contig VV78X204223.3, whole genome... 42 0.068 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.068 11
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.069 14
(BZ256924) CH230-479G20.TV CHORI-230 Segment 2 Rattus norveg... 46 0.069 2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 0.073 12
(AL408738) T3 end of clone AV0AA010D08 of library AV0AA from... 40 0.079 2
(AC181039) Strongylocentrotus purpuratus clone R3-3029B14, W... 48 0.086 6
(AC142507) Medicago truncatula clone mth2-30h19, complete se... 34 0.088 10
(AC113123) Mus musculus chromosome 8, clone RP23-349O15, com... 48 0.096 7
(EC086759) 324663 CK01 Drosophila melanogaster cDNA clone 74... 52 0.10 1
(CO293770) EK204611.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 52 0.10 1
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 40 0.11 8
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 40 0.13 12
(EJ299499) 1095390003596 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.15 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 40 0.16 11
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 0.18 19
(AL034559) Plasmodium falciparum MAL3P7. 34 0.20 16
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 38 0.23 11
(CU928290) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.23 2
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 36 0.27 9
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 32 0.29 14
(AL437579) T3 end of clone BC0AA010B11 of library BC0AA from... 40 0.32 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 32 0.34 14
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 0.37 23
(CZ966865) 165921 Tomato MboI BAC Library Solanum lycopersic... 36 0.37 3
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 36 0.39 18
(AC109192) Mus musculus, clone RP24-360F5, complete sequence. 50 0.40 1
(AC084383) Mus musculus BAC clone RP23-10B20 from 17, comple... 50 0.40 1
(AC122368) Mus musculus chromosome UNK clone RP23-452D13, WO... 50 0.40 1
(AC171754) Atelerix albiventris clone LB4-198J7, WORKING DRA... 50 0.40 1
(CR196332) Reverse strand read from insert in 5'HPRT inserti... 50 0.40 1
(FD464239) LARW450TF Haematobia irritans 1st Instar Larvae H... 50 0.40 1
(FD460698) LARVH01TF Haematobia irritans 1st Instar Larvae H... 50 0.40 1
(EJ371381) 1092963725597 Global-Ocean-Sampling_GS-28-01-01-1... 34 0.55 4
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.57 17
(AM437249) Vitis vinifera contig VV78X201595.4, whole genome... 36 0.57 6
(AC175636) Sorex araneus clone SA_Ba-490G11, WORKING DRAFT S... 44 0.58 8
(EJ357129) 1092963655415 Global-Ocean-Sampling_GS-28-01-01-1... 34 0.59 3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.71 21
(AC095273) Rattus norvegicus clone CH230-11J14, WORKING DRAF... 48 0.79 2
(EK577958) 1095521371867 Global-Ocean-Sampling_GS-32-01-01-1... 38 0.80 3
(CQ655069) Sequence 12026 from Patent WO0234771. 34 0.80 16
(AX954529) Sequence 1375 from Patent WO03093306. 34 0.80 16
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.82 8
(CT145410) Sus scrofa genomic clone CH242-235J22, genomic su... 42 0.85 2
(CU407308) Zebrafish DNA sequence from clone CH211-54E20 in ... 38 0.88 7
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 0.91 20
(CU463045) Medicago truncatula chromosome 5 clone mth4-4e12,... 40 0.94 8
(AC219227) Solanum lycopersicum chromosome 6 clone C06SLm011... 34 0.96 9
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.99 9
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 40 1.0 8
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 1.1 18
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 1.1 13
(BJ394761) Dictyostelium discoideum cDNA clone:dds36k08, 5' ... 32 1.1 4
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 36 1.2 14
(CS468836) Sequence 27 from Patent EP1748080. 32 1.2 10
(CS419313) Sequence 27 from Patent WO2006094836. 32 1.2 10
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 1.2 12
(AC183850) Atelerix albiventris clone LB4-207B5, WORKING DRA... 40 1.2 7
(EJ160507) 1092344046437 Global-Ocean-Sampling_GS-27-01-01-1... 34 1.2 3
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 32 1.2 17
(EJ411155) 1093012147351 Global-Ocean-Sampling_GS-28-01-01-1... 34 1.3 3
(DQ832718) Phytophthora ramorum mitochondrion, complete genome. 40 1.3 9
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 40 1.4 9
(BU989003) HF19H03r HF Hordeum vulgare subsp. vulgare cDNA c... 36 1.4 3
>(AF305417) Dictyostelium discoideum Aardvark (aar) mRNA, complete
cds.
Length = 2450
Score = 2054 bits (1036), Expect(2) = 0.0
Identities = 1039/1040 (99%)
Strand = Plus / Plus
Query: 1411 ttattggagtaatgaatgaaaatttacataatccaatgattttaagagaaacttgttata 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 ttattggagtaatgaatgaaaatttacataatccaatgattttaagagaaacttgttata 1470
Query: 1471 ttttaaagagattaagttatagacaaagaaaagaggatgaacatgaaagtttaattgcaa 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 ttttaaagagattaagttatagacaaagaaaagaggatgaacatgaaagtttaattgcaa 1530
Query: 1531 gatatggtggtattagtttaattttacaagcaatgaagaatcatccatatgatgccggtg 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 gatatggtggtattagtttaattttacaagcaatgaagaatcatccatatgatgccggtg 1590
Query: 1591 ttcaagaagatgcatgtggtgcattaggaaatttaacttgtgattcaccaaacaatatgg 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 ttcaagaagatgcatgtggtgcattaggaaatttaacttgtgattcaccaaacaatatgg 1650
Query: 1651 gtttatattcaaatgataactatctatcagttgtcgagcaaggtggtattcaattgatat 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 gtttatattcaaatgataactatctatcagttgtcgagcaaggtggtattcaattgatat 1710
Query: 1711 tacaagcaatgaaaaatcatatgatgaatccaggtgtacaatataatacaagctttgtat 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 tacaagcaatgaaaaatcatatgatgaatccaggtgtacaatataatacaagctttgtat 1770
Query: 1771 tgagaaatcttgcacgtaatgatgttagtgaaagtagagtggcaattgagggtggtattc 1830
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1771 tgagaaatcttgcacgtaatgatgttagtgaaagtaaagtggcaattgagggtggtattc 1830
Query: 1831 aatcgattgcaaccgcaatgaaaaatcatccaaatcatattggaattcaaacacaaggtt 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 aatcgattgcaaccgcaatgaaaaatcatccaaatcatattggaattcaaacacaaggtt 1890
Query: 1891 gtggtgccctaagaaatttaggttgtaacgatagtaataaggttttaagtgcaaaagaag 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 gtggtgccctaagaaatttaggttgtaacgatagtaataaggttttaagtgcaaaagaag 1950
Query: 1951 gtggtatcggtttaattttacgtgcaatgagatccttttcttctcatcctgatttacaat 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 gtggtatcggtttaattttacgtgcaatgagatccttttcttctcatcctgatttacaat 2010
Query: 2011 tgaatggttgtggtgctcttagaaatttggctcgtaatgaagataataaaaatatgatct 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 tgaatggttgtggtgctcttagaaatttggctcgtaatgaagataataaaaatatgatct 2070
Query: 2071 ctcgtcaaaatggtattcaattggttttgggtgcaatgtcaaatcatccagatgatccag 2130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 ctcgtcaaaatggtattcaattggttttgggtgcaatgtcaaatcatccagatgatccag 2130
Query: 2131 acgttcaagatgaaggttgtgctgctctcatcaatttagcttatcaagatgaagcaaatg 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 acgttcaagatgaaggttgtgctgctctcatcaatttagcttatcaagatgaagcaaatg 2190
Query: 2191 aagaaacaattgctcgtgaaggtggtatcaatttaatcctaaaggcaatgagaaatcatc 2250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 aagaaacaattgctcgtgaaggtggtatcaatttaatcctaaaggcaatgagaaatcatc 2250
Query: 2251 ctttccatagtggtgttcaaatgcaaggtagaggtgccttgaaaaacctttcatgtaatc 2310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 ctttccatagtggtgttcaaatgcaaggtagaggtgccttgaaaaacctttcatgtaatc 2310
Query: 2311 ctaaaaataaattaacaatagctcgttctggtggtattgaattaatgaatatcgctatgc 2370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 ctaaaaataaattaacaatagctcgttctggtggtattgaattaatgaatatcgctatgc 2370
Query: 2371 aaaatcatccaaattttgcaaatagattcttagaattatcaagaatacttcaagtagcat 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 aaaatcatccaaattttgcaaatagattcttagaattatcaagaatacttcaagtagcat 2430
Query: 2431 tagaagatggaaatatttaa 2450
||||||||||||||||||||
Sbjct: 2431 tagaagatggaaatatttaa 2450
Score = 630 bits (318), Expect(2) = 0.0
Identities = 318/318 (100%)
Strand = Plus / Plus
Query: 1086 cattatgatgaaaataatcaattcgatatctttttaattccaactgaaatgttggtacat 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 cattatgatgaaaataatcaattcgatatctttttaattccaactgaaatgttggtacat 1145
Query: 1146 ttattatctttcttatctgcaaatgatctttggagaataagtttaacttgtaaaagaatt 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ttattatctttcttatctgcaaatgatctttggagaataagtttaacttgtaaaagaatt 1205
Query: 1206 tggtacattgttgatgttttcaaattttgggaattattatttgaacaaacttgtccaaga 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 tggtacattgttgatgttttcaaattttgggaattattatttgaacaaacttgtccaaga 1265
Query: 1266 atatattatgctatgcaatttaattcaagatggtcaaatccaacttcatttcaatcaaaa 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 atatattatgctatgcaatttaattcaagatggtcaaatccaacttcatttcaatcaaaa 1325
Query: 1326 atgattttatgttatatcgatagattaccaactgataattataaaaattttgataaatca 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 atgattttatgttatatcgatagattaccaactgataattataaaaattttgataaatca 1385
Query: 1386 gatgaaagtggtcaaatt 1403
||||||||||||||||||
Sbjct: 1386 gatgaaagtggtcaaatt 1403
Score = 498 bits (251), Expect(9) = 0.0
Identities = 251/251 (100%)
Strand = Plus / Plus
Query: 732 caacaactagaacaacaagaagaagaactttttaatcaatttaattttttagaaggtata 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 caacaactagaacaacaagaagaagaactttttaatcaatttaattttttagaaggtata 791
Query: 792 gaagatcaaaacgattttttatcagaacaagaaacgattcaaaaaataaaattccttatc 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaagatcaaaacgattttttatcagaacaagaaacgattcaaaaaataaaattccttatc 851
Query: 852 aaaatgactgctaaatcaatgtcaaattatagttcgccaaatactttaattccatcagtt 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 aaaatgactgctaaatcaatgtcaaattatagttcgccaaatactttaattccatcagtt 911
Query: 912 tcaaaaacttatatttcaccttttggattatcttcaaatggtagcactaataaccacaac 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tcaaaaacttatatttcaccttttggattatcttcaaatggtagcactaataaccacaac 971
Query: 972 aacaacaacaa 982
|||||||||||
Sbjct: 972 aacaacaacaa 982
Score = 315 bits (159), Expect(9) = 0.0
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 390 tcatttttaaacagtgacttaattgaacgtttaataattaaatttacaattggatattta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcatttttaaacagtgacttaattgaacgtttaataattaaatttacaattggatattta 449
Query: 450 aaaaacaatattacagaggattatattgaacaaattcttttagaaaatcaaaataatttt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaaaacaatattacagaggattatattgaacaaattcttttagaaaatcaaaataatttt 509
Query: 510 ataaaaagtacaacaacatcaaattatattttagaagaa 548
|||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ataaaaagtacaacaacatcaaattatattttagaagaa 548
Score = 95.6 bits (48), Expect(9) = 0.0
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 670 tactatccaaatttaataaattagaggaggataacgaattagaattac 717
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tactatccaaatttaataaattagaggaggataacgaattagaattac 717
Score = 67.9 bits (34), Expect(9) = 0.0
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ggaagaatatttttaactatcatccaaagtgacc 99
||||||||||||||||||||||||||||||||||
Sbjct: 66 ggaagaatatttttaactatcatccaaagtgacc 99
Score = 36.2 bits (18), Expect(9) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 178 tgaatgattgtggaagtc 195
||||||||||||||||||
Sbjct: 178 tgaatgattgtggaagtc 195
Score = 34.2 bits (17), Expect(9) = 0.0
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1554 ttacaagcaatgaagaatcat 1574
|||||||||||||| ||||||
Sbjct: 1710 ttacaagcaatgaaaaatcat 1730
Score = 30.2 bits (15), Expect(9) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1716 gcaatgaaaaatcat 1730
|||||||||||||||
Sbjct: 1845 gcaatgaaaaatcat 1859
Score = 30.2 bits (15), Expect(9) = 0.0
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 1887 ggttgtggtgccctaagaaattt 1909
||||||||||| || ||||||||
Sbjct: 2016 ggttgtggtgctcttagaaattt 2038
Score = 26.3 bits (13), Expect(9) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 1692 ggtggtattcaat 1704
|||||||||||||
Sbjct: 1821 ggtggtattcaat 1833
Score = 34.2 bits (17), Expect(5) = 0.18
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1710 ttacaagcaatgaaaaatcat 1730
|||||||||||||| ||||||
Sbjct: 1554 ttacaagcaatgaagaatcat 1574
Score = 30.2 bits (15), Expect(5) = 0.18
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1845 gcaatgaaaaatcat 1859
|||||||||||||||
Sbjct: 1716 gcaatgaaaaatcat 1730
Score = 30.2 bits (15), Expect(5) = 0.18
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 2016 ggttgtggtgctcttagaaattt 2038
||||||||||| || ||||||||
Sbjct: 1887 ggttgtggtgccctaagaaattt 1909
Score = 26.3 bits (13), Expect(5) = 0.18
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 967 acaacaacaacaa 979
|||||||||||||
Sbjct: 970 acaacaacaacaa 982
Score = 26.3 bits (13), Expect(5) = 0.18
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 1821 ggtggtattcaat 1833
|||||||||||||
Sbjct: 1692 ggtggtattcaat 1704
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,604,827,122
Number of extensions: 176398581
Number of successful extensions: 16934229
Number of sequences better than 10.0: 415
Length of query: 2454
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2429
Effective length of database: 97,216,030,006
Effective search space: 236137736884574
Effective search space used: 236137736884574
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7. 5 |
| Homology vs Protein |
Query= Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Contig-U12907-1Q.Seq.d
(2454 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC074259_24(AC074259|pid:none) Trypanosoma brucei chromosome 6 c... 115 1e-23
BC076906_1(BC076906|pid:none) Xenopus tropicalis MGC89050 protei... 98 2e-18
(O22161) RecName: Full=Protein ARABIDILLO 1; AltName: Full=F-box... 95 1e-17
BC166821_1(BC166821|pid:none) Rattus norvegicus armadillo repeat... 92 9e-17
AK081550_1(AK081550|pid:none) Mus musculus 16 days embryo head c... 91 2e-16
CR749678_1(CR749678|pid:none) Homo sapiens mRNA; cDNA DKFZp762A1... 91 2e-16
BC005754_1(BC005754|pid:none) Mus musculus armadillo repeat cont... 91 3e-16
(Q9M224) RecName: Full=Protein ARABIDILLO 2; &AL138646_1(AL1386... 90 3e-16
AK049351_1(AK049351|pid:none) Mus musculus ES cells cDNA, RIKEN ... 90 4e-16
AC003038_1(AC003038|pid:none) Human DNA from chromosome 19-speci... 89 6e-16
(Q6NXE6) RecName: Full=Armadillo repeat-containing protein 6; &... 89 6e-16
(Q5RD03) RecName: Full=Armadillo repeat-containing protein 6; &... 89 6e-16
FJ883473_1(FJ883473|pid:none) Physcomitrella patens physcodillo-... 86 6e-15
FJ883472_1(FJ883472|pid:none) Physcomitrella patens physcodillo-... 84 2e-14
BC030077_1(BC030077|pid:none) Mus musculus armadillo repeat cont... 83 4e-14
AK072816_1(AK072816|pid:none) Oryza sativa Japonica Group cDNA c... 82 1e-13
AP008216_1316(AP008216|pid:none) Oryza sativa (japonica cultivar... 82 1e-13
AM989984_51(AM989984|pid:none) Zygosaccharomyces rouxii strain C... 82 1e-13
EF107732_1(EF107732|pid:none) Pichia angusta Vac8p (vac8) gene, ... 81 2e-13
(Q6FJV1) RecName: Full=Vacuolar protein 8; &CR380959_145(CR3809... 80 5e-13
FM992691_454(FM992691|pid:none) Candida dubliniensis CD36 chromo... 78 1e-12
(Q59MN0) RecName: Full=Vacuolar protein 8; 78 1e-12
(Q2GW27) RecName: Full=Vacuolar protein 8; 76 5e-12
AE017341_348(AE017341|pid:none) Cryptococcus neoformans var. neo... 74 2e-11
(Q6CX49) RecName: Full=Vacuolar protein 8; &CR382121_469(CR3821... 74 2e-11
(Q5KPA7) RecName: Full=Vacuolar protein 8; 74 2e-11
AM494969_20(AM494969|pid:none) Leishmania braziliensis chromosom... 73 6e-11
CT005269_14(CT005269|pid:none) Leishmania major strain Friedlin,... 68 2e-09
AM502250_50(AM502250|pid:none) Leishmania infantum chromosome 32. 67 3e-09
(Q2U5T5) RecName: Full=Vacuolar protein 8; &AP007166_440(AP0071... 65 1e-08
BC046728_1(BC046728|pid:none) Xenopus laevis hypothetical protei... 64 2e-08
AP008209_354(AP008209|pid:none) Oryza sativa (japonica cultivar-... 64 3e-08
EU939737_1(EU939737|pid:none) Saccoglossus kowalevskii beta-cate... 62 8e-08
EU019992_1(EU019992|pid:none) Sus scrofa LRRK2 mRNA, complete cds. 62 8e-08
AL049655_15(AL049655|pid:none) Arabidopsis thaliana DNA chromoso... 62 1e-07
(Q9SV36) RecName: Full=Armadillo repeat-containing kinesin-like ... 62 1e-07
T06733(T06733)kinesin homolog F28P10.150 - Arabidopsis thaliana 62 1e-07
(Q9FZ06) RecName: Full=Armadillo repeat-containing kinesin-like ... 62 1e-07
AC025416_15(AC025416|pid:none) Genomic sequence for Arabidopsis ... 62 1e-07
(Q5VQ09) RecName: Full=Armadillo repeat-containing kinesin-like ... 62 1e-07
BT045980_1(BT045980|pid:none) Salmo salar clone ssal-rgf-538-157... 61 2e-07
(P30998) RecName: Full=Junction plakoglobin; AltName: Full=Desmo... 61 2e-07
DQ013259_1(DQ013259|pid:none) Branchiostoma floridae beta-cateni... 60 4e-07
AF408421_1(AF408421|pid:none) Nematostella vectensis beta-cateni... 59 6e-07
BT033481_1(BT033481|pid:none) Zea mays full-length cDNA clone ZM... 59 1e-06
AM429813_2(AM429813|pid:none) Vitis vinifera contig VV78X214515.... 59 1e-06
BT053036_1(BT053036|pid:none) Medicago truncatula clone MTYFL_FM... 59 1e-06
AY243535_1(AY243535|pid:none) Homo sapiens gamma-catenin mRNA, c... 58 1e-06
M23410_1(M23410|pid:none) Human plakoglobin (PLAK) mRNA, complet... 58 1e-06
(Q8SPJ1) RecName: Full=Junction plakoglobin; AltName: Full=Desmo... 58 1e-06
A32905(A32905)plakoglobin, desmosomal - human 58 1e-06
EU289289_1(EU289289|pid:none) Parhyale hawaiensis beta-catenin m... 58 1e-06
BC118114_1(BC118114|pid:none) Bos taurus junction plakoglobin, m... 58 1e-06
(P14923) RecName: Full=Junction plakoglobin; AltName: Full=Desmo... 58 1e-06
AB120428_1(AB120428|pid:none) Branchiostoma belcheri b-cat mRNA ... 58 2e-06
(Q02257) RecName: Full=Junction plakoglobin; AltName: Full=Desmo... 57 3e-06
M90365_1(M90365|pid:none) Mus musculus plakoglobin mRNA, partial... 57 3e-06
EU726765_1(EU726765|pid:none) Parhyale hawaiensis beta-catenin m... 57 3e-06
DQ869570_1(DQ869570|pid:none) Podocoryne carnea beta-catenin mRN... 57 4e-06
AM477505_6(AM477505|pid:none) Vitis vinifera contig VV78X063132.... 57 4e-06
(Q7K486) RecName: Full=Armadillo repeat-containing protein 6 hom... 56 5e-06
AP005391_14(AP005391|pid:none) Oryza sativa Japonica Group genom... 56 5e-06
BC114243_1(BC114243|pid:none) Danio rerio ankyrin and armadillo ... 56 5e-06
U38624_1(U38624|pid:none) Hydra vulgaris beta-catenin mRNA, comp... 56 7e-06
JC4835(JC4835) beta-catenin - Hydra magnipapillata &U36781_1(U3... 56 7e-06
U34814_1(U34814|pid:none) Lytechinus variegatus beta-catenin mRN... 55 9e-06
AF361811_1(AF361811|pid:none) Arabidopsis thaliana AT3g06720/F3E... 55 9e-06
S35092(S35092)plakoglobin - mouse (fragment) 55 1e-05
AF099738_1(AF099738|pid:none) Danio rerio cell-adhesion protein ... 55 1e-05
BT059259_1(BT059259|pid:none) Salmo salar clone ssal-rgf-537-118... 55 2e-05
U41081_1(U41081|pid:none) Danio rerio b-catenin mRNA, complete c... 55 2e-05
(Q7QHW5) RecName: Full=Armadillo segment polarity protein; 55 2e-05
AY650367_1(AY650367|pid:none) Macaca fascicularis catenin beta-1... 54 2e-05
AP004584_21(AP004584|pid:none) Oryza sativa Japonica Group genom... 54 2e-05
EF591294_1(EF591294|pid:none) Anser anser beta-catenin mRNA, com... 54 2e-05
AK296790_1(AK296790|pid:none) Homo sapiens cDNA FLJ59565 complet... 54 2e-05
(Q02248) RecName: Full=Catenin beta-1; AltName: Full=Beta-cateni... 54 2e-05
AB062292_1(AB062292|pid:none) Homo sapiens OK/SW-cl.35 mRNA for ... 54 2e-05
(O43028) RecName: Full=Vacuolar protein 8; &AL022071_14(AL02207... 54 2e-05
AK133656_1(AK133656|pid:none) Mus musculus adult male pituitary ... 54 2e-05
AB124575_1(AB124575|pid:none) Pelodiscus sinensis PsBeta-catenin... 54 2e-05
AK299954_1(AK299954|pid:none) Homo sapiens cDNA FLJ59415 complet... 54 2e-05
AK294778_1(AK294778|pid:none) Homo sapiens cDNA FLJ57878 complet... 54 2e-05
(Q02453) RecName: Full=Armadillo segment polarity protein; &L04... 54 3e-05
AK018515_1(AK018515|pid:none) Mus musculus adult male colon cDNA... 54 3e-05
CP000546_2683(CP000546|pid:none) Burkholderia mallei NCTC 10229 ... 54 3e-05
AY336093_1(AY336093|pid:none) Carassius auratus beta-catenin mRN... 54 3e-05
AB179333_1(AB179333|pid:none) Macaca fascicularis testis cDNA cl... 54 3e-05
DQ786777_1(DQ786777|pid:none) Oryctolagus cuniculus beta-catenin... 54 4e-05
AK073828_1(AK073828|pid:none) Oryza sativa Japonica Group cDNA c... 53 5e-05
AP008212_2108(AP008212|pid:none) Oryza sativa (japonica cultivar... 53 5e-05
(O22193) RecName: Full=U-box domain-containing protein 4; ... 53 6e-05
BC047815_1(BC047815|pid:none) Danio rerio catenin (cadherin-asso... 53 6e-05
EU307105_1(EU307105|pid:none) Cerebratulus lacteus beta-catenin ... 52 8e-05
EU955511_1(EU955511|pid:none) Zea mays clone 1535124 ubiquitin-p... 52 8e-05
CP000589_311(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 52 8e-05
EU955662_1(EU955662|pid:none) Zea mays clone 1541801 ubiquitin-p... 52 8e-05
AY952205_1(AY952205|pid:none) Aplysia californica beta-catenin m... 52 1e-04
(Q9LPC6) RecName: Full=Armadillo repeat-containing kinesin-like ... 52 1e-04
S57873(S57873;S57343) pendulin - mouse &U12270_1(U12270|pid:none) 51 2e-04
BC128668_1(BC128668|pid:none) Xenopus laevis catenin, mRNA (cDNA... 51 2e-04
(P26233) RecName: Full=Catenin beta; AltName: Full=Beta-catenin;... 51 2e-04
BC082826_1(BC082826|pid:none) Xenopus laevis beta-catenin protei... 51 2e-04
BC135469_1(BC135469|pid:none) Xenopus tropicalis catenin (cadher... 51 2e-04
BC045258_1(BC045258|pid:none) Xenopus laevis catenin, mRNA (cDNA... 51 2e-04
CP001159_56(CP001159|pid:none) Thalassiosira pseudonana CCMP1335... 51 2e-04
BC082280_1(BC082280|pid:none) Mus musculus karyopherin (importin... 51 2e-04
(P52293) RecName: Full=Importin subunit alpha-2; AltName: Full=K... 51 2e-04
PDBN(1IAL)A MOL_ID: 1;MOL_ID: 1; MOLECULE: IMPORTIN ALPHA; MOLEC... 51 2e-04
CP000572_3112(CP000572|pid:none) Burkholderia pseudomallei 1106a... 50 3e-04
(Q4I1B1) RecName: Full=Vacuolar protein 8; 50 3e-04
BX571965_2724(BX571965|pid:none) Burkholderia pseudomallei strai... 50 3e-04
AM430133_1(AM430133|pid:none) Vitis vinifera contig VV78X041705.... 50 4e-04
AB120624_1(AB120624|pid:none) Achaearanea tepidariorum arm mRNA ... 50 4e-04
FB813779_1(FB813779|pid:none) Sequence 33052 from Patent WO20080... 50 4e-04
(Q681N2) RecName: Full=U-box domain-containing protein 15; ... 50 5e-04
CP001408_3245(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 50 5e-04
AK317640_1(AK317640|pid:none) Arabidopsis thaliana AT5G19330 mRN... 50 5e-04
AF369706_1(AF369706|pid:none) Capsicum annuum importin alpha 1 m... 50 5e-04
AK175585_1(AK175585|pid:none) Arabidopsis thaliana mRNA for arm ... 50 5e-04
AB016888_3(AB016888|pid:none) Arabidopsis thaliana genomic DNA, ... 50 5e-04
EF137254_1(EF137254|pid:none) Nicotiana benthamiana Impa2 mRNA, ... 50 5e-04
FN357857_2(FN357857|pid:none) Schistosoma mansoni genome sequenc... 50 5e-04
EF676093_1(EF676093|pid:none) Haliotis asinina beta-catenin mRNA... 50 5e-04
AY779026_1(AY779026|pid:none) Rattus norvegicus karyopherin alph... 49 7e-04
EF137253_1(EF137253|pid:none) Nicotiana benthamiana Impa1 mRNA, ... 49 7e-04
(Q5S006) RecName: Full=Leucine-rich repeat serine/threonine-prot... 49 7e-04
AP005728_5(AP005728|pid:none) Oryza sativa Japonica Group genomi... 49 7e-04
AB210325_1(AB210325|pid:none) Ciona intestinalis mRNA for beta-c... 49 9e-04
AB031543_1(AB031543|pid:none) Ciona intestinalis mRNA for beta-c... 49 9e-04
AM484866_3(AM484866|pid:none) Vitis vinifera contig VV78X193876.... 49 9e-04
(Q29I35) RecName: Full=Armadillo segment polarity protein; 49 9e-04
AC003114_2(AC003114|pid:none) Arabidopsis thaliana chromosome 1 ... 49 0.001
T52098(T52098) probable nuclear transport factor importin alpha ... 48 0.001
CP001574_745(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 48 0.001
GQ166956_1(GQ166956|pid:none) Sus scrofa karyopherin alpha 2 mRN... 48 0.002
(Q5S007) RecName: Full=Leucine-rich repeat serine/threonine-prot... 48 0.002
AF408424_1(AF408424|pid:none) Schistocerca americana beta-cateni... 48 0.002
FB813737_1(FB813737|pid:none) Sequence 33010 from Patent WO20080... 48 0.002
AJ557446_1(AJ557446|pid:none) Xenopus laevis mRNA for importin a... 47 0.003
EF153481_1(EF153481|pid:none) Brassica napus importin alpha-like... 47 0.003
AF408422_1(AF408422|pid:none) Platynereis dumerilii beta-catenin... 47 0.003
AM423437_2(AM423437|pid:none) Vitis vinifera contig VV78X180550.... 47 0.003
AE014298_297(AE014298|pid:none) Drosophila melanogaster chromoso... 47 0.003
Y09511_1(Y09511|pid:none) A.thaliana mRNA for Kap alpha protein. 47 0.003
(P18824) RecName: Full=Armadillo segment polarity protein; &AE0... 47 0.003
AM432887_1(AM432887|pid:none) Vitis vinifera contig VV78X186549.... 47 0.003
AB236757_1(AB236757|pid:none) Trifolium pratense RNA for putativ... 47 0.003
AB169177_1(AB169177|pid:none) Macaca fascicularis testis cDNA, c... 47 0.004
CR954209_344(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 47 0.004
BC158097_1(BC158097|pid:none) Mus musculus armadillo repeat cont... 47 0.004
T52101(T52101) probable nuclear transport factor importin alpha-... 47 0.004
AY099835_1(AY099835|pid:none) Arabidopsis thaliana putative prot... 47 0.004
AY890158_1(AY890158|pid:none) Synthetic construct Homo sapiens c... 46 0.006
T26395(T26395)hypothetical protein Y105C5B.s - Caenorhabditis el... 46 0.006
AY892641_1(AY892641|pid:none) Synthetic construct Homo sapiens c... 46 0.006
AC010870_4(AC010870|pid:none) Arabidopsis thaliana chromosome II... 46 0.007
AM424224_1(AM424224|pid:none) Vitis vinifera contig VV78X132673.... 46 0.007
AY345584_1(AY345584|pid:none) Canis familiaris clone 3' plakoglo... 45 0.010
GM037208_1(GM037208|pid:none) Sequence 5 from Patent WO2008043826. 45 0.013
AK118914_1(AK118914|pid:none) Arabidopsis thaliana At5g58680 mRN... 45 0.013
CP001329_223(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 45 0.013
CR860871_1(CR860871|pid:none) Pongo abelii mRNA; cDNA DKFZp469C0... 45 0.013
AY084344_1(AY084344|pid:none) Arabidopsis thaliana clone 105025 ... 45 0.013
AB020755_13(AB020755|pid:none) Arabidopsis thaliana genomic DNA,... 45 0.013
AP008207_3285(AP008207|pid:none) Oryza sativa (japonica cultivar... 45 0.013
AX021840_1(AX021840|pid:none) Sequence 14 from Patent EP0861322. 45 0.016
(P52292) RecName: Full=Importin subunit alpha-2; AltName: Full=K... 45 0.016
AK291954_1(AK291954|pid:none) Homo sapiens cDNA FLJ78270 complet... 45 0.016
AF369707_1(AF369707|pid:none) Capsicum annuum importin alpha 2 m... 44 0.021
BC067848_1(BC067848|pid:none) Homo sapiens karyopherin alpha 2 (... 44 0.021
(O04294) RecName: Full=Importin subunit alpha-2; AltName: Full=K... 44 0.021
CR762026_1(CR762026|pid:none) Xenopus tropicalis finished cDNA, ... 44 0.021
BC081368_1(BC081368|pid:none) Xenopus tropicalis MGC89911 protei... 44 0.021
AM460760_2(AM460760|pid:none) Vitis vinifera contig VV78X201926.... 44 0.021
FB813795_1(FB813795|pid:none) Sequence 33068 from Patent WO20080... 44 0.028
L81172_1(L81172|pid:none) Arabidopsis thaliana importin alpha ho... 44 0.028
AF165818_122(AF165818|pid:none) Guillardia theta nucleomorph chr... 44 0.028
BC048023_1(BC048023|pid:none) Xenopus laevis similar to plakophi... 44 0.028
AC146792_7(AC146792|pid:none) Medicago truncatula clone mth2-32m... 44 0.028
AJ719475_1(AJ719475|pid:none) Gallus gallus mRNA for hypothetica... 44 0.037
BC125740_1(BC125740|pid:none) Xenopus tropicalis plakophilin 4, ... 44 0.037
CR954220_28(CR954220|pid:none) Ostreococcus tauri strain OTTH059... 44 0.037
EF147992_1(EF147992|pid:none) Populus trichocarpa clone WS0126_I... 44 0.037
(Q9STT1) RecName: Full=U-box domain-containing protein 39; ... 43 0.048
AL136859_1(AL136859|pid:none) Homo sapiens mRNA; cDNA DKFZp434P1... 43 0.048
AX877278_1(AX877278|pid:none) Sequence 12183 from Patent EP10746... 43 0.048
AK302048_1(AK302048|pid:none) Homo sapiens cDNA FLJ52356 complet... 43 0.048
AC005042_1(AC005042|pid:none) Homo sapiens BAC clone RP11-552E1 ... 43 0.048
(Q99569) RecName: Full=Plakophilin-4; AltName: Full=p0071; &X81... 43 0.048
BC053343_1(BC053343|pid:none) Homo sapiens karyopherin alpha 2 (... 43 0.048
EU959766_1(EU959766|pid:none) Zea mays clone 219897 importin alp... 43 0.048
T52099(T52099) probable nuclear transport factor importin alpha ... 43 0.048
AL845536_4(AL845536|pid:none) Mouse DNA sequence from clone RP23... 43 0.062
(Q0WUF6) RecName: Full=U-box domain-containing protein 41; ... 43 0.062
BC019128_1(BC019128|pid:none) Mus musculus plakophilin 4, mRNA (... 43 0.062
AB015469_16(AB015469|pid:none) Arabidopsis thaliana genomic DNA,... 43 0.062
AK302419_1(AK302419|pid:none) Homo sapiens cDNA FLJ52363 complet... 43 0.062
AY128369_1(AY128369|pid:none) Arabidopsis thaliana putative prot... 43 0.062
(Q96321) RecName: Full=Importin subunit alpha-1; AltName: Full=K... 43 0.062
CP001576_328(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 43 0.062
BC050806_1(BC050806|pid:none) Mus musculus gene model 711, (NCBI... 42 0.081
AL844509_602(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.081
(Q80YS9) RecName: Full=Probable protein kinase-like protein SgK0... 42 0.081
AB017063_4(AB017063|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.11
AY074524_1(AY074524|pid:none) Arabidopsis thaliana unknown prote... 42 0.11
FJ422582_1(FJ422582|pid:none) Arabidopsis thaliana ABAP1 (ABAP1)... 42 0.11
U69533_1(U69533|pid:none) Arabidopsis thaliana AtKAP alpha mRNA,... 42 0.11
AY040009_1(AY040009|pid:none) Arabidopsis thaliana unknown prote... 42 0.11
AP003985_7(AP003985|pid:none) Oryza sativa Japonica Group genomi... 42 0.14
U52351_1(U52351|pid:none) Homo sapiens arm-repeat protein NPRAP/... 41 0.18
CP000881_79(CP000881|pid:none) Hemiselmis andersenii chromosome ... 41 0.18
AY054164_1(AY054164|pid:none) Arabidopsis thaliana AT3g06720/F3E... 41 0.18
EU328348_1(EU328348|pid:none) Homo sapiens T-cell delta-catenin ... 41 0.18
AK294420_1(AK294420|pid:none) Homo sapiens cDNA FLJ55967 complet... 41 0.18
BC145217_1(BC145217|pid:none) Mus musculus catenin (cadherin ass... 41 0.18
AK299300_1(AK299300|pid:none) Homo sapiens cDNA FLJ56233 complet... 41 0.18
FB813785_1(FB813785|pid:none) Sequence 33058 from Patent WO20080... 41 0.18
(O35116) RecName: Full=Catenin delta-2; Flags: Fragment; &AB008... 41 0.18
AF005268_1(AF005268|pid:none) Oryza sativa plakoglobin/armadillo... 41 0.18
BC154070_1(BC154070|pid:none) Xenopus tropicalis hypothetical pr... 41 0.18
BT063489_1(BT063489|pid:none) Zea mays full-length cDNA clone ZM... 41 0.24
AL590147_1(AL590147|pid:none) Zebrafish DNA sequence from clone ... 41 0.24
AY267540_1(AY267540|pid:none) Toxoplasma gondii importin alpha m... 41 0.24
(P52170) RecName: Full=Importin subunit alpha-1; AltName: Full=K... 41 0.24
AP004994_4(AP004994|pid:none) Oryza sativa Japonica Group genomi... 40 0.31
BC097584_1(BC097584|pid:none) Xenopus laevis importin alpha 1a, ... 40 0.31
FN357917_10(FN357917|pid:none) Schistosoma mansoni genome sequen... 40 0.31
(Q71VM4) RecName: Full=Importin subunit alpha-1a; &AB004660_1(A... 40 0.31
EU974536_1(EU974536|pid:none) Zea mays clone 451975 unknown mRNA. 40 0.31
AM429121_2(AM429121|pid:none) Vitis vinifera contig VV78X041468.... 40 0.31
U60472_1(U60472|pid:none) Homo sapiens catenin-4 mRNA, partial c... 40 0.31
T52102(T52102) probable nuclear transport factor importin alpha-... 40 0.31
AF005265_1(AF005265|pid:none) Oryza sativa importin mRNA, comple... 40 0.31
EU956712_1(EU956712|pid:none) Zea mays clone 1571354 spotted lea... 40 0.40
AF150745_1(AF150745|pid:none) Xenopus laevis clone XNC2H21a-p007... 40 0.40
AJ719848_1(AJ719848|pid:none) Gallus gallus mRNA for hypothetica... 40 0.40
BT058548_1(BT058548|pid:none) Salmo salar clone Contig1784 Impor... 40 0.40
BC168046_1(BC168046|pid:none) Xenopus tropicalis cDNA clone MGC:... 40 0.40
BC072124_1(BC072124|pid:none) Xenopus laevis catenin arvcf-2ABC ... 40 0.53
AK229671_1(AK229671|pid:none) Arabidopsis thaliana mRNA for hypo... 40 0.53
AM463829_3(AM463829|pid:none) Vitis vinifera contig VV78X105031.... 40 0.53
BX538353_9(BX538353|pid:none) Cryptosporidium parvum chromosome ... 40 0.53
AB024311_1(AB024311|pid:none) Oryza sativa Japonica Group mRNA f... 40 0.53
AF150746_1(AF150746|pid:none) Xenopus laevis clone XNCARVCF.1.0.... 40 0.53
AK078240_1(AK078240|pid:none) Mus musculus adult male olfactory ... 40 0.53
BC170676_1(BC170676|pid:none) Xenopus tropicalis karyopherin (im... 39 0.69
BT044597_1(BT044597|pid:none) Drosophila melanogaster RE55335 fu... 39 0.69
AE013599_13(AE013599|pid:none) Drosophila melanogaster chromosom... 39 0.69
AE013599_14(AE013599|pid:none) Drosophila melanogaster chromosom... 39 0.69
BC070983_1(BC070983|pid:none) Xenopus laevis hypothetical protei... 39 0.69
AC011620_1(AC011620|pid:none) Arabidopsis thaliana chromosome II... 39 0.69
AY069321_1(AY069321|pid:none) Drosophila melanogaster LD03740 fu... 39 0.69
AK084886_1(AK084886|pid:none) Mus musculus 13 days embryo lung c... 39 0.90
AY815375_1(AY815375|pid:none) Schistosoma japonicum SJCHGC09414 ... 39 0.90
CU928170_283(CU928170|pid:none) Kluyveromyces thermotolerans str... 39 0.90
AC132492_6(AC132492|pid:none) Oryza sativa (japonica cultivar-gr... 39 0.90
(O93614) RecName: Full=Rap1 GTPase-GDP dissociation stimulator 1... 39 1.2
AF286212_1(AF286212|pid:none) Mus musculus ARVCF isoform A1 (Arv... 39 1.2
AC004255_16(AC004255|pid:none) Arabidopsis thaliana BAC T1F9 chr... 39 1.2
(O44326) RecName: Full=Protein humpback-2; &AF016853_1(AF016853... 39 1.2
JE0358(JE0358)ralB binding protein - clawed frog 39 1.2
Y12394_1(Y12394|pid:none) H.sapiens mRNA for SRP1-like protein. 39 1.2
(O00505) RecName: Full=Importin subunit alpha-3; AltName: Full=K... 39 1.2
(Q924L5) RecName: Full=Armadillo repeat protein deleted in velo-... 39 1.2
AF286215_1(AF286215|pid:none) Mus musculus ARVCF isoform B2 (Arv... 39 1.2
AF034756_1(AF034756|pid:none) Homo sapiens importin-alpha homolo... 39 1.2
(O00192) RecName: Full=Armadillo repeat protein deleted in velo-... 39 1.2
AK127729_1(AK127729|pid:none) Homo sapiens cDNA FLJ45829 fis, cl... 39 1.2
FM995166_1(FM995166|pid:none) Nakaseomyces bacillisporus complet... 39 1.2
(Q9CAG5) RecName: Full=U-box domain-containing protein 7; ... 38 1.5
(Q9FJP6) RecName: Full=U-box domain-containing protein 38; ... 38 1.5
CP001331_450(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 38 2.0
CP000058_1467(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 38 2.0
CP001333_143(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 38 2.0
AE017344_469(AE017344|pid:none) Cryptococcus neoformans var. neo... 38 2.0
AM487281_1(AM487281|pid:none) Vitis vinifera contig VV78X019214.... 38 2.0
FB813773_1(FB813773|pid:none) Sequence 33046 from Patent WO20080... 37 2.6
CP000117_2344(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 37 2.6
AK172052_1(AK172052|pid:none) Mus musculus activated spleen cDNA... 37 2.6
AJ557447_1(AJ557447|pid:none) Xenopus laevis mRNA for importin a... 37 2.6
CP000854_2566(CP000854|pid:none) Mycobacterium marinum M, comple... 37 3.4
AK160989_1(AK160989|pid:none) Mus musculus 15 days embryo head c... 37 3.4
AP007151_1254(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 37 3.4
FN357337_25(FN357337|pid:none) Schistosoma mansoni genome sequen... 37 4.5
AM494972_151(AM494972|pid:none) Leishmania braziliensis chromoso... 37 4.5
AC147802_14(AC147802|pid:none) Oryza sativa chromosome 3 BAC OSJ... 37 4.5
AK155401_1(AK155401|pid:none) Mus musculus NOD-derived CD11c +ve... 37 4.5
BC011279_1(BC011279|pid:none) Mus musculus RAP1, GTP-GDP dissoci... 36 5.8
AK052125_1(AK052125|pid:none) Mus musculus 12 days embryo eyebal... 36 5.8
BC080415_1(BC080415|pid:none) Xenopus laevis importin alpha 1b, ... 36 5.8
FN357363_18(FN357363|pid:none) Schistosoma mansoni genome sequen... 36 5.8
EU972074_1(EU972074|pid:none) Zea mays clone 374472 armadillo/be... 36 5.8
AM494972_147(AM494972|pid:none) Leishmania braziliensis chromoso... 36 5.8
B55194(B55194)importin 2 - African clawed frog 36 5.8
(P52171) RecName: Full=Importin subunit alpha-2; AltName: Full=K... 36 5.8
AD0782(AD0782) probable L-serine ammonia-lyase (EC 4.3.1.17) [im... 36 5.8
AY577009_1(AY577009|pid:none) Danio rerio clone RZ151A3F12 karyo... 36 5.8
(Q5RAG3) RecName: Full=Protein zer-1 homolog; AltName: Full=Zyg-... 36 5.8
AK226338_1(AK226338|pid:none) Arabidopsis thaliana mRNA for hypo... 36 7.6
BC112707_1(BC112707|pid:none) Bos taurus RAP1, GTP-GDP dissociat... 36 7.6
BC001705_1(BC001705|pid:none) Homo sapiens serine active site co... 36 7.6
AY056152_1(AY056152|pid:none) Arabidopsis thaliana putative SKP1... 36 7.6
(Q9FE83) RecName: Full=F-box protein SKIP2; AltName: Full=SKP1-i... 36 7.6
AJ720205_1(AJ720205|pid:none) Gallus gallus mRNA for hypothetica... 36 7.6
CP000267_2290(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 36 7.6
EU972806_1(EU972806|pid:none) Zea mays clone 388372 unknown mRNA. 36 7.6
(Q96JX3) RecName: Full=Protein SERAC1; &AK027823_1(AK027823|pid... 36 7.6
CR382131_1004(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 36 7.6
AL135907_3(AL135907|pid:none) Human DNA sequence from clone RP1-... 36 7.6
(Q2TBM9) RecName: Full=Protein SERAC1; &BC109896_1(BC109896|pid... 35 10.0
BC098269_1(BC098269|pid:none) Homo sapiens RAP1, GTP-GDP dissoci... 35 10.0
AY010065_1(AY010065|pid:none) Sus scrofa karyopherin alpha 2 (Kp... 35 10.0
AM933172_2184(AM933172|pid:none) Salmonella enterica subsp. ente... 35 10.0
CP001127_2276(CP001127|pid:none) Salmonella enterica subsp. ente... 35 10.0
AB016872_20(AB016872|pid:none) Arabidopsis thaliana genomic DNA,... 35 10.0
BX842669_3(BX842669|pid:none) Zebrafish DNA sequence from clone ... 35 10.0
AY889292_1(AY889292|pid:none) Synthetic construct Homo sapiens c... 35 10.0
CP001120_2280(CP001120|pid:none) Salmonella enterica subsp. ente... 35 10.0
FB802599_1(FB802599|pid:none) Sequence 21872 from Patent WO20080... 35 10.0
AL356815_10(AL356815|pid:none) Neurospora crassa DNA linkage gro... 35 10.0
BC099845_1(BC099845|pid:none) Homo sapiens RAP1, GTP-GDP dissoci... 35 10.0
>AC074259_24(AC074259|pid:none) Trypanosoma brucei chromosome 6 clone
RPCI93-4M18, complete sequence.
Length = 1128
Score = 115 bits (287), Expect = 1e-23
Identities = 92/368 (25%), Positives = 158/368 (42%), Gaps = 37/368 (10%)
Frame = +3
Query: 1392 SGQIKKIIGVMNENLHNPMILRETCYILKRLSYRQRKEDEHESLIARYGGISLILQAMKN 1571
+G +++++ VM + N I C +L LS+ + S I GI L+L AM+N
Sbjct: 329 TGCVQRVLEVMRKYAGNASIQEYACSLLSYLSF---DSETITSFITDANGIILVLAAMRN 385
Query: 1572 HPYDAGVQEDACGALGNLTCDSPNN----------------MG----------------- 1652
P + AC AL LT ++ MG
Sbjct: 386 FPESEDLLVSACAALSGLTFNNLKGQEVIVSEKGVALILEAMGRGKSARLQDNGCLALGT 445
Query: 1653 -LYSNDNYLSVVEQGGIQLILQAMKNHMMNPGVQYNTSFVLRNLARN-DVSESRVAIEGG 1826
+++D V+ GG+Q+I++A+ H N G+ N L +A N + + G
Sbjct: 446 MCWNSDLKADVIRYGGVQMIMRALAAHYTNAGLVKNACRALAQVAFNCEAYRDDMHASGV 505
Query: 1827 IQSIATAMKNHPNHIGIQTQGCGALRNLGC-NDSNKVLSAKEGGIGLILRAMRSFSSHPD 2003
I I M HPN+ +Q GC AL L N+ N G +I+ AMR+ + + +
Sbjct: 506 IPLIMKGMAEHPNYDRVQMHGCVALSYLSWNNEQNSAQIISNNGYAVIINAMRNHAHNAE 565
Query: 2004 LQLNGCGALRNLARNEDNKNMISRQNGIQLVLGAMSNHPDDPDVQDEGCAALINLAYQDE 2183
+Q + AL N+ ++ ++L++GAM H +VQ+E C A++ L+
Sbjct: 566 VQEHASRALANIGGVRSDE----LTPALELIIGAMRRHEHVSEVQEETCRAIVTLSLIST 621
Query: 2184 ANEETIAREGGINLILKAMRNHPFHSGVQMQGRGALKNLSCNPKN-KLTIARSGGIELMN 2360
+ ++ + G ++ AM N P VQ + AL +L+ N + G+E++
Sbjct: 622 SYKDKLFELGAAECVVTAMHNFPSTQVVQQEACNALAHLAYEHANLNRAVTELSGVEVLL 681
Query: 2361 IAMQNHPN 2384
AM+ + N
Sbjct: 682 RAMKTYVN 689
Score = 110 bits (274), Expect = 3e-22
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 2/290 (0%)
Frame = +3
Query: 1515 ESLIARYGGISLILQAMKNHPYDAGVQEDACGALGNLTCDSPNNMGLYSNDNYLSVVEQG 1694
+ LI G + +L+ M+ + +A +QE AC L L+ DS ++ N
Sbjct: 323 KQLIHTTGCVQRVLEVMRKYAGNASIQEYACSLLSYLSFDSETITSFITDAN-------- 374
Query: 1695 GIQLILQAMKNHMMNPGVQYNTSFVLRNLARNDVSESRVAI-EGGIQSIATAMKNHPNHI 1871
GI L+L AM+N + + + L L N++ V + E G+ I AM
Sbjct: 375 GIILVLAAMRNFPESEDLLVSACAALSGLTFNNLKGQEVIVSEKGVALILEAM-GRGKSA 433
Query: 1872 GIQTQGCGALRNLGCNDSNKVLSAKEGGIGLILRAMRSFSSHPDLQLNGCGALRNLARN- 2048
+Q GC AL + N K + GG+ +I+RA+ + ++ L N C AL +A N
Sbjct: 434 RLQDNGCLALGTMCWNSDLKADVIRYGGVQMIMRALAAHYTNAGLVKNACRALAQVAFNC 493
Query: 2049 EDNKNMISRQNGIQLVLGAMSNHPDDPDVQDEGCAALINLAYQDEANEETIAREGGINLI 2228
E ++ + I L++ M+ HP+ VQ GC AL L++ +E N I G +I
Sbjct: 494 EAYRDDMHASGVIPLIMKGMAEHPNYDRVQMHGCVALSYLSWNNEQNSAQIISNNGYAVI 553
Query: 2229 LKAMRNHPFHSGVQMQGRGALKNLSCNPKNKLTIARSGGIELMNIAMQNH 2378
+ AMRNH ++ VQ AL N+ ++LT A +EL+ AM+ H
Sbjct: 554 INAMRNHAHNAEVQEHASRALANIGGVRSDELTPA----LELIIGAMRRH 599
Score = 108 bits (271), Expect = 7e-22
Identities = 100/361 (27%), Positives = 152/361 (42%), Gaps = 36/361 (9%)
Frame = +3
Query: 1377 DKSDESGQIKKIIGVMNENLHNPMILRETCYILKRLSYRQRKEDEHESLIARYGGISLIL 1556
D SG I I+ M E+ + + C L LS+ +++ + I G ++I+
Sbjct: 498 DDMHASGVIPLIMKGMAEHPNYDRVQMHGCVALSYLSWNN---EQNSAQIISNNGYAVII 554
Query: 1557 QAMKNHPYDAGVQEDACGALGNL-------------------------------TCDSPN 1643
AM+NH ++A VQE A AL N+ TC +
Sbjct: 555 NAMRNHAHNAEVQEHASRALANIGGVRSDELTPALELIIGAMRRHEHVSEVQEETCRAIV 614
Query: 1644 NMGLYSNDNYLSVVEQGGIQLILQAMKNHMMNPGVQYNTSFVLRNLARNDVSESRVAIE- 1820
+ L S + E G + ++ AM N VQ L +LA + +R E
Sbjct: 615 TLSLISTSYKDKLFELGAAECVVTAMHNFPSTQVVQQEACNALAHLAYEHANLNRAVTEL 674
Query: 1821 GGIQSIATAMKNHPNHIGIQTQGCGALRNLGCNDSNKVLSAKE----GGIGLILRAMRSF 1988
G++ + AMK + N IQ CG L L +++ ++ K+ GG+ I+RAM +F
Sbjct: 675 SGVEVLLRAMKTYVNVPKIQLNACGGLSALAFDNT---IAQKQIYDLGGVACIIRAMENF 731
Query: 1989 SSHPDLQLNGCGALRNLARNEDNKNMISRQNGIQLVLGAMSNHPDDPDVQDEGCAALINL 2168
L+L GC L LA N + K ++ I +L AM H D P +Q C A+
Sbjct: 732 ERLRMLEL-GCSVLGTLAWNSEIKESVAVV-AIPEILKAMRVHHDSPLLQKSTCRAISQF 789
Query: 2169 AYQDEANEETIAREGGINLILKAMRNHPFHSGVQMQGRGALKNLSCNPKNKLTIARSGGI 2348
A+ E+N + +A G I LI+ AMR H + + G AL L S GI
Sbjct: 790 AFNSESNRKLLAESGAIPLIVLAMRTHVTTDKLLVHGIKALTYLCWENSQVAEAIISEGI 849
Query: 2349 E 2351
E
Sbjct: 850 E 850
Score = 102 bits (254), Expect = 7e-20
Identities = 77/246 (31%), Positives = 117/246 (47%), Gaps = 3/246 (1%)
Frame = +3
Query: 1692 GGIQLILQAMKNHMMNPGVQYNTSFVLRNLA-RNDVSESRVAIEGGIQSIATAMKNHPNH 1868
G +Q +L+ M+ + N +Q +L L+ ++ S + GI + AM+N P
Sbjct: 330 GCVQRVLEVMRKYAGNASIQEYACSLLSYLSFDSETITSFITDANGIILVLAAMRNFPES 389
Query: 1869 IGIQTQGCGALRNLGCND-SNKVLSAKEGGIGLILRAMRSFSSHPDLQLNGCGALRNLAR 2045
+ C AL L N+ + + E G+ LIL AM S LQ NGC AL +
Sbjct: 390 EDLLVSACAALSGLTFNNLKGQEVIVSEKGVALILEAMGRGKS-ARLQDNGCLALGTMCW 448
Query: 2046 NEDNKNMISRQNGIQLVLGAMSNHPDDPDVQDEGCAALINLAYQDEANEETIAREGGINL 2225
N D K + R G+Q+++ A++ H + + C AL +A+ EA + + G I L
Sbjct: 449 NSDLKADVIRYGGVQMIMRALAAHYTNAGLVKNACRALAQVAFNCEAYRDDMHASGVIPL 508
Query: 2226 ILKAMRNHPFHSGVQMQGRGALKNLSC-NPKNKLTIARSGGIELMNIAMQNHPNFANRFL 2402
I+K M HP + VQM G AL LS N +N I + G ++ AM+NH + A
Sbjct: 509 IMKGMAEHPNYDRVQMHGCVALSYLSWNNEQNSAQIISNNGYAVIINAMRNHAHNAEVQE 568
Query: 2403 ELSRIL 2420
SR L
Sbjct: 569 HASRAL 574
Score = 71.2 bits (173), Expect = 2e-10
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 4/254 (1%)
Frame = +3
Query: 1350 LPTDNYKNFDKSDESGQIKKIIGVMNENLHNPMILRETCYILKRLSYRQRKEDEHESL-- 1523
L + +YK DK E G + ++ M+ ++ +E C L L+Y EH +L
Sbjct: 618 LISTSYK--DKLFELGAAECVVTAMHNFPSTQVVQQEACNALAHLAY------EHANLNR 669
Query: 1524 -IARYGGISLILQAMKNHPYDAGVQEDACGALGNLTCDSPNNMGLYSNDNYLSVVEQGGI 1700
+ G+ ++L+AMK + +Q +ACG L L D+ + + GG+
Sbjct: 670 AVTELSGVEVLLRAMKTYVNVPKIQLNACGGLSALAFDNTIAQK--------QIYDLGGV 721
Query: 1701 QLILQAMKNHMMNPGVQYNTSFVLRNLARNDVSESRVAIEGGIQSIATAMKNHPNHIGIQ 1880
I++AM+N ++ S VL LA N + VA+ I I AM+ H + +Q
Sbjct: 722 ACIIRAMENFERLRMLELGCS-VLGTLAWNSEIKESVAVVA-IPEILKAMRVHHDSPLLQ 779
Query: 1881 TQGCGALRNLGCN-DSNKVLSAKEGGIGLILRAMRSFSSHPDLQLNGCGALRNLARNEDN 2057
C A+ N +SN+ L A+ G I LI+ AMR+ + L ++G AL L
Sbjct: 780 KSTCRAISQFAFNSESNRKLLAESGAIPLIVLAMRTHVTTDKLLVHGIKALTYLCWENSQ 839
Query: 2058 KNMISRQNGIQLVL 2099
GI+ VL
Sbjct: 840 VAEAIISEGIEEVL 853
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,717,811,038
Number of extensions: 47196398
Number of successful extensions: 123236
Number of sequences better than 10.0: 322
Number of HSP's gapped: 122482
Number of HSP's successfully gapped: 564
Length of query: 818
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 681
Effective length of database: 607,772,281
Effective search space: 413892923361
Effective search space used: 413892923361
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
6 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |