| Contig-U12868-1 |
| Contig ID |
Contig-U12868-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1241 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
4088034 |
| End point |
4086793 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
3 |
| Number of EST |
3 |
| Link to clone list |
U12868 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 4 |
| Homology vs DNA |
Query= Contig-U12868-1 (Contig-U12868-1Q) /CSM_Contig/Contig-U12868-1Q.Seq.d
(1241 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ422551) Dictyostelium discoideum cDNA clone:ddv46e12, 5' ... 1302 0.0 1
(BJ365508) Dictyostelium discoideum cDNA clone:ddc35j13, 5' ... 1213 0.0 1
(BJ361117) Dictyostelium discoideum cDNA clone:ddc9m22, 5' e... 1172 0.0 1
(AC132800) Rattus norvegicus clone CH230-3M1, *** SEQUENCING... 36 0.43 2
(AC141288) Homo sapiens chromosome 16 clone RP11-357A20, WOR... 36 0.45 2
(AL713920) Mouse DNA sequence from clone RP23-330B20 on chro... 36 0.45 2
(AG411455) Mus musculus molossinus DNA, clone:MSMg01-272B04.... 34 0.46 3
(AL512882) Human DNA sequence from clone RP11-441A11 on chro... 36 0.48 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.51 15
(AC170196) Macaca mulatta clone CH250-420C15, WORKING DRAFT ... 44 0.76 8
(AM437867) Vitis vinifera contig VV78X133858.3, whole genome... 48 0.80 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 48 0.80 1
(AC009910) Drosophila melanogaster, chromosome 2L, region 25... 48 0.80 1
(AC004721) Drosophila melanogaster DNA sequence (P1 DS03308 ... 48 0.80 1
(AC110702) Rattus norvegicus clone CH230-82A3, *** SEQUENCIN... 48 0.80 1
(AC017455) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.80 1
(CT561192) A BAC library has been constructed from cultivar ... 48 0.80 1
(DH001234) Oryzias latipes Fosmid clone:GOLWFno14_o06, rever... 34 2.2 2
(DH342678) Oryzias latipes Fosmid clone:GOLWFno713_j05, forw... 34 2.2 2
(ER557477) 1093015715698 Global-Ocean-Sampling_GS-36-01-01-2... 36 2.4 3
(BH769487) BMBAC366B02SP6_PSU Brugia malayi Genomic Bac Libr... 44 2.5 2
(CU927910) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.6 5
(FM166265) Oryzias latipes EST, clone M073--H10_066. 42 2.8 2
(CT573319) Zebrafish DNA sequence from clone DKEY-3K23 in li... 46 3.2 1
(BX927105) Zebrafish DNA sequence from clone DKEY-40F3 in li... 46 3.2 1
(BC083735) Rattus norvegicus integral membrane protein 2B, m... 46 3.2 1
(BD102432) Novel genes related to proliferative glomerulonep... 46 3.2 1
(AC111673) Rattus norvegicus clone CH230-49J17, *** SEQUENCI... 46 3.2 1
(AC097824) Rattus norvegicus clone CH230-173G23, *** SEQUENC... 46 3.2 1
(EJ237217) 1095313003635 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.2 1
(EJ142333) 1092343662227 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.2 1
(DY471435) RVL22626 Wackym-Soares normalized rat vestibular ... 46 3.2 1
(DV722138) RVL13489 Wackym-Soares normalized rat vestibular ... 46 3.2 1
(DV720074) RVL11001 Wackym-Soares normalized rat vestibular ... 46 3.2 1
(DV717544) RVL8047 Wackym-Soares normalized rat vestibular c... 46 3.2 1
(DV215166) gx01c10.x1 Rat eye iridocorneal angle. Unnormaliz... 46 3.2 1
(DN955970) AGENCOURT_51043642 NCI_CGAP_Pr49 Rattus norvegicu... 46 3.2 1
(CV797190) UI-R-EB1-clq-h-18-0-UI.s1 UI-R-EB1 Rattus norvegi... 46 3.2 1
(CV796350) UI-R-DQ1-clh-h-19-0-UI.s1 UI-R-DQ1 Rattus norvegi... 46 3.2 1
(CR756043) Single read from one cDNA extremity clone GP0AAA1... 46 3.2 1
(CR754776) Single read from one cDNA extremity clone GP0AAA1... 46 3.2 1
(CR474287) RZPD Rattus norvegicus cDNA clone LIONp463G09121 ... 46 3.2 1
(CO571003) AGENCOURT_28688856 NIH_MGC_250 Rattus norvegicus ... 46 3.2 1
(CO554590) AGENCOURT_28501944 NIH_MGC_252 Rattus norvegicus ... 46 3.2 1
(CO554427) AGENCOURT_27852797 NIH_MGC_252 Rattus norvegicus ... 46 3.2 1
(CO554070) AGENCOURT_27852722 NIH_MGC_252 Rattus norvegicus ... 46 3.2 1
(CO393210) AGENCOURT_27852811 NIH_MGC_252 Rattus norvegicus ... 46 3.2 1
(CN540061) UI-R-CV1-brv-a-09-0-UI.s1 UI-R-CV1 Rattus norvegi... 46 3.2 1
(CK845751) UI-R-A1-dz-b-06-0-UI.s10 UI-R-A1 Rattus norvegicu... 46 3.2 1
(CK845107) UI-R-AC0-yn-c-11-0-UI.s10 UI-R-AC0 Rattus norvegi... 46 3.2 1
(CK840470) UI-R-AG0-wu-h-02-0-UI.s10 UI-R-AG0 Rattus norvegi... 46 3.2 1
(AJ650713) Sus scrofa EST, clone C0003276_B22. 46 3.2 1
(CF249099) it64b08.y1 Joslin Regenerating Pancreas full-leng... 46 3.2 1
(CF111200) Shultzomica04451 Rat lung airway and parenchyma c... 46 3.2 1
(CB813928) AMGNNUC:SRPB2-00070-H7-A srpb2 (10220) Rattus nor... 46 3.2 1
(CB772901) AMGNNUC:MRPE4-00116-G5-A mrpe4 (10380) Rattus nor... 46 3.2 1
(CB731242) AMGNNUC:SRCS1-00105-D2-A srcs1 (10883) Rattus nor... 46 3.2 1
(CB725806) AMGNNUC:NRPI3-00055-B5-A W Rat pituitary (10477) ... 46 3.2 1
(CB584367) AMGNNUC:NRDG1-00104-E3-A nrdg1 (10855) Rattus nor... 46 3.2 1
(CB569817) AGENCOURT_12543747 NICHD_Rr_Pit1 Rattus norvegicu... 46 3.2 1
(CB568978) AGENCOURT_12600191 NICHD_Rr_Pit1 Rattus norvegicu... 46 3.2 1
(CB567606) AGENCOURT_12595473 NICHD_Rr_Pit1 Rattus norvegicu... 46 3.2 1
(CB316253) AGENCOURT_11766622 NICHD_Rr_Pit1 Rattus norvegicu... 46 3.2 1
(CB314329) AGENCOURT_11790464 NICHD_Rr_Pit1 Rattus norvegicu... 46 3.2 1
(CA509571) UI-R-FS0-cqq-j-08-0-UI.s1 NCI_CGAP_FS0 Rattus nor... 46 3.2 1
(CA509036) UI-R-FS0-cqp-i-12-0-UI.s1 NCI_CGAP_FS0 Rattus nor... 46 3.2 1
(CA507640) UI-R-FS1-cqd-f-13-0-UI.s1 NCI_CGAP_FS1 Rattus nor... 46 3.2 1
(AI716486) UI-R-Y0-ach-f-06-0-UI.s1 UI-R-Y0 Rattus norvegicu... 46 3.2 1
(AI706132) UI-R-AC0-yn-c-11-0-UI.s1 UI-R-AC0 Rattus norvegic... 46 3.2 1
(AI602560) UI-R-AE0-xi-e-03-0-UI.s1 UI-R-AE0 Rattus norvegic... 46 3.2 1
(AI600017) EST251720 Normalized rat embryo, Bento Soares Rat... 46 3.2 1
(AI579356) UI-R-AG0-wu-h-02-0-UI.s1 UI-R-AG0 Rattus norvegic... 46 3.2 1
(AI577803) UI-R-AB0-vq-b-03-0-UI.s2 UI-R-AB0 Rattus norvegic... 46 3.2 1
(AI577579) UI-R-Y0-vk-e-08-0-UI.s1 UI-R-Y0 Rattus norvegicus... 46 3.2 1
(AI576661) UI-R-Y0-ve-c-06-0-UI.s2 UI-R-Y0 Rattus norvegicus... 46 3.2 1
(BU759686) UI-R-FF0-cpf-e-20-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 46 3.2 1
(BQ783186) UI-R-FF0-cpi-j-24-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 46 3.2 1
(BQ782854) UI-R-FF0-cpl-d-11-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 46 3.2 1
(BQ782762) UI-R-FF0-cpl-a-14-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 46 3.2 1
(BQ198871) UI-R-EB0-clb-n-16-0-UI.s1 UI-R-EB0 Rattus norvegi... 46 3.2 1
(BP870425) Rattus norvegicus mRNA, clone: 20-P0-1. 46 3.2 1
(AI412621) EST240920 Normalized rat brain, Bento Soares Ratt... 46 3.2 1
(AI408676) EST236967 Normalized rat ovary, Bento Soares Ratt... 46 3.2 1
(AI237523) EST234085 Normalized rat placenta, Bento Soares R... 46 3.2 1
(AI235301) EST231863 Normalized rat ovary, Bento Soares Ratt... 46 3.2 1
(AI234194) EST230882 Normalized rat lung, Bento Soares Rattu... 46 3.2 1
(AI178138) EST221801 Normalized rat placenta, Bento Soares R... 46 3.2 1
(AI104138) EST213427 Normalized rat heart, Bento Soares Ratt... 46 3.2 1
(AI102911) EST212200 Normalized rat embryo, Bento Soares Rat... 46 3.2 1
(AI013982) EST207537 Normalized rat spleen, Bento Soares Rat... 46 3.2 1
(AI013339) EST208014 Normalized rat spleen, Bento Soares Rat... 46 3.2 1
(AI012842) EST207293 Normalized rat placenta, Bento Soares R... 46 3.2 1
(AI012080) EST206531 Normalized rat placenta, Bento Soares R... 46 3.2 1
(AI009918) EST204369 Normalized rat lung, Bento Soares Rattu... 46 3.2 1
(AA963484) UI-R-E1-gi-e-01-0-UI.s1 UI-R-E1 Rattus norvegicus... 46 3.2 1
(BP501897) Rattus norvegicus mRNA, clone:RI00725, 3' end, ex... 46 3.2 1
(BP496280) Rattus norvegicus mRNA, clone:RI14281, 3' end, ex... 46 3.2 1
(BP487992) Rattus norvegicus mRNA, clone:RI05065, 3' end, ex... 46 3.2 1
(BP481748) Rattus norvegicus mRNA, clone:RBC19717, 3' end, e... 46 3.2 1
(BP481268) Rattus norvegicus mRNA, clone:RBC19166, 3' end, e... 46 3.2 1
>(BJ422551) Dictyostelium discoideum cDNA clone:ddv46e12, 5' end,
single read.
Length = 661
Score = 1302 bits (657), Expect = 0.0
Identities = 660/661 (99%)
Strand = Plus / Plus
Query: 1 aattattaatgagtaatacaagtccagtttatagttttttaaagacatcatcatcatcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattattaatgagtaatacaagtccagtttatagttttttaaagacatcatcatcatcga 60
Query: 61 ttcaaactttggattttagtggtaataaatcaactacaaccaaagagagtgtaattgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaaactttggattttagtggtaataaatcaactacaaccaaagagagtgtaattgata 120
Query: 121 tcttatcatttttcaaacaaatgtcacacttacaaactgtaaatttatcaagaattcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttatcatttttcaaacaaatgtcacacttacaaactgtaaatttatcaagaattcaaa 180
Query: 181 ccactccagatgatttgaaactattgtttagtcctgcaacatcattattgaaatgttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccactccagatgatttgaaactattgtttagtcctgcaacatcattattgaaatgttcaa 240
Query: 241 gtgtagatttatcagagaatgatcttggtgatggtggtatcattaaactttgtgaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgtagatttatcagagaatgatcttggtgatggtggtatcattaaactttgtgaaatta 300
Query: 301 tgtatccaaattcaactcttcatcatctttcaatcgatggtaactttaaaacaaaatcaa 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtatccaaattcaaatcttcatcatctttcaatcgatggtaactttaaaacaaaatcaa 360
Query: 361 aacttagagcacgtgcaatagaggcattgataaacttgatcgatgataatacatccatcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacttagagcacgtgcaatagaggcattgataaacttgatcgatgataatacatccatcg 420
Query: 421 aatcactttcattggcaagtggtagtggtaaatatcaattgaagggcgatttaatgccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatcactttcattggcaagtggtagtggtaaatatcaattgaagggcgatttaatgccat 480
Query: 481 tgttattatcattgctaaagaatcaatcattggtcaaacttgatatctctggaaatggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgttattatcattgctaaagaatcaatcattggtcaaacttgatatctctggaaatggtg 540
Query: 541 ttggtgatagtggtgctttggctgtctcgaaaatcctttggaagaatcaaactttgaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggtgatagtggtgctttggctgtctcgaaaatcctttggaagaatcaaactttgaaat 600
Query: 601 cattgaaatgcgatggtaatgatttctcttataccgctttgaaaatgattaaatgctcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cattgaaatgcgatggtaatgatttctcttataccgctttgaaaatgattaaatgctcaa 660
Query: 661 t 661
|
Sbjct: 661 t 661
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,483,813,348
Number of extensions: 89857446
Number of successful extensions: 8120049
Number of sequences better than 10.0: 147
Length of query: 1241
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1217
Effective length of database: 97,308,875,965
Effective search space: 118424902049405
Effective search space used: 118424902049405
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 5 |
| Homology vs Protein |
Query= Contig-U12868-1 (Contig-U12868-1Q) /CSM_Contig/Contig-U12868-1Q.Seq.d
(1241 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil ge... 92 3e-17
T02764(T02764) myosin-I binding protein 125 - Acanthamoeba caste... 81 9e-14
AC114263_20(AC114263|pid:none) Dictyostelium discoideum chromoso... 77 1e-12
BC166169_1(BC166169|pid:none) Xenopus tropicalis hypothetical pr... 69 5e-10
(Q3UFQ8) RecName: Full=Leucine-rich repeat-containing protein 16... 67 1e-09
AK074167_1(AK074167|pid:none) Homo sapiens mRNA for FLJ00240 pro... 67 2e-09
FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR... 66 3e-09
(Q5XHY1) RecName: Full=Leucine-rich repeat-containing protein 16B; 65 4e-09
AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete... 63 2e-08
(Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16... 63 2e-08
BC166378_1(BC166378|pid:none) Xenopus tropicalis hypothetical pr... 60 2e-07
BX088593_3(BX088593|pid:none) Zebrafish DNA sequence from clone ... 59 5e-07
(Q3V3V9) RecName: Full=Leucine-rich repeat-containing protein 16... 57 1e-06
FJ026014_1(FJ026014|pid:none) Homo sapiens CARMIL2b (RLTPR) mRNA... 56 2e-06
AB113647_1(AB113647|pid:none) Homo sapiens RLTPR mRNA for RGD, l... 56 2e-06
(Q14BP6) RecName: Full=Leucine-rich repeat-containing protein LO... 52 6e-05
EU643474_20(EU643474|pid:none) Adineta vaga clone Av240_B G-prot... 51 8e-05
AM453162_2(AM453162|pid:none) Vitis vinifera contig VV78X048857.... 51 8e-05
CR860703_1(CR860703|pid:none) Pongo abelii mRNA; cDNA DKFZp459P1... 50 2e-04
AK043591_1(AK043591|pid:none) Mus musculus 10 days neonate corte... 49 3e-04
EU643473_3(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep... 49 4e-04
BX908798_1455(BX908798|pid:none) Parachlamydia-related symbiont ... 49 5e-04
AM494963_52(AM494963|pid:none) Leishmania braziliensis chromosom... 47 0.001
BX908798_264(BX908798|pid:none) Parachlamydia-related symbiont U... 47 0.001
(Q6ZQY2) RecName: Full=Leucine-rich repeat-containing protein LO... 47 0.002
FJ004846_1(FJ004846|pid:none) Ictalurus punctatus NLRC3 receptor... 46 0.002
AM494972_448(AM494972|pid:none) Leishmania braziliensis chromoso... 45 0.004
(Q9VTU3) RecName: Full=Rho GTPase-activating protein 68F; &AE01... 45 0.004
AY056236_1(AY056236|pid:none) Arabidopsis thaliana unknown prote... 45 0.005
AC007067_12(AC007067|pid:none) Genomic sequence for Arabidopsis ... 45 0.007
BC087492_1(BC087492|pid:none) Xenopus laevis hypothetical LOC496... 44 0.009
BC167605_1(BC167605|pid:none) Xenopus tropicalis hypothetical pr... 44 0.016
(Q86W25) RecName: Full=NACHT, LRR and PYD domains-containing pro... 44 0.016
AF111169_4(AF111169|pid:none) Homo sapiens chromosome 14 BAC con... 44 0.016
(Q5DU56) RecName: Full=Protein NLRC3; 43 0.020
AY329487_1(AY329487|pid:none) Mus musculus strain CBA/J MATER pr... 43 0.020
AK079766_1(AK079766|pid:none) Mus musculus 0 day neonate thymus ... 43 0.020
AY196362_1(AY196362|pid:none) Mus musculus strain CBA/J MATER pr... 43 0.020
BC160196_1(BC160196|pid:none) Synthetic construct Mus musculus c... 43 0.020
EU432548_11(EU432548|pid:none) Philodina roseola guanylyl cyclas... 43 0.027
EU652317_9(EU652317|pid:none) Philodina roseola GTP binding prot... 43 0.027
EU348832_1(EU348832|pid:none) Sus scrofa nucleotide-binding olig... 43 0.027
BX908798_1341(BX908798|pid:none) Parachlamydia-related symbiont ... 43 0.027
AC117070_7(AC117070|pid:none) Dictyostelium discoideum chromosom... 42 0.035
(A0JPI9) RecName: Full=Uncharacterized protein C14orf166B homolo... 42 0.035
EU850440_1(EU850440|pid:none) Philodina roseola rho GTPase activ... 42 0.035
AY329490_1(AY329490|pid:none) Mus musculus strain A/J MATER prot... 42 0.035
T23427(T23427) hypothetical protein K07G5.1 - Caenorhabditis ele... 42 0.035
AM502239_177(AM502239|pid:none) Leishmania infantum chromosome 21. 42 0.046
AM270251_33(AM270251|pid:none) Aspergillus niger contig An11c034... 42 0.046
CT005244_15(CT005244|pid:none) Leishmania major strain Friedlin,... 42 0.059
Z75539_5(Z75539|pid:none) Caenorhabditis elegans Cosmid F28C1, c... 41 0.078
AL845168_4(AL845168|pid:none) Zebrafish DNA sequence from clone ... 41 0.078
C89243(C89243) protein F28C1.3 [imported] - Caenorhabditis elega... 41 0.078
AL591143_2(AL591143|pid:none) Mouse DNA sequence from clone RP23... 41 0.10
AL591143_4(AL591143|pid:none) Mouse DNA sequence from clone RP23... 41 0.10
BC080423_1(BC080423|pid:none) Xenopus laevis MGC86436 protein, m... 41 0.10
AK134993_1(AK134993|pid:none) Mus musculus adult male olfactory ... 41 0.10
(P83509) RecName: Full=Glucocorticoid receptor DNA-binding facto... 41 0.10
AY329484_1(AY329484|pid:none) Mus musculus strain SWR/J MATER pr... 41 0.10
BC053384_1(BC053384|pid:none) Mus musculus NLR family, pyrin dom... 41 0.10
(Q6VSG4) RecName: Full=NACHT, LRR and PYD domains-containing pro... 41 0.10
CR394528_1(CR394528|pid:none) Zebrafish DNA sequence from clone ... 41 0.10
CP000323_1144(CP000323|pid:none) Psychrobacter cryohalolentis K5... 41 0.10
FM992691_206(FM992691|pid:none) Candida dubliniensis CD36 chromo... 41 0.10
BC121371_1(BC121371|pid:none) Xenopus tropicalis Active breakpoi... 41 0.10
AK298356_1(AK298356|pid:none) Homo sapiens cDNA FLJ56603 complet... 40 0.13
(Q9NRY4) RecName: Full=Glucocorticoid receptor DNA-binding facto... 40 0.13
A38218(A38218)GAP-associated protein p190 - rat 40 0.13
BC035541_1(BC035541|pid:none) Mus musculus glucocorticoid recept... 40 0.13
(Q91YM2) RecName: Full=Glucocorticoid receptor DNA-binding facto... 40 0.13
AE014298_2(AE014298|pid:none) Drosophila melanogaster chromosome... 40 0.13
CP000675_1739(CP000675|pid:none) Legionella pneumophila str. Cor... 40 0.13
CT005265_51(CT005265|pid:none) Leishmania major strain Friedlin,... 40 0.13
CR954203_68(CR954203|pid:none) Ostreococcus tauri strain OTTH059... 40 0.13
(O43295) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 3... 40 0.13
AK299909_1(AK299909|pid:none) Homo sapiens cDNA FLJ54747 complet... 40 0.13
BC142556_1(BC142556|pid:none) Xenopus laevis hypothetical protei... 40 0.13
AK302682_1(AK302682|pid:none) Homo sapiens cDNA FLJ60982 complet... 40 0.13
AF159851_1(AF159851|pid:none) Homo sapiens Rho GAP p190-A mRNA, ... 40 0.13
FN392319_159(FN392319|pid:none) Pichia pastoris GS115 chromosome... 40 0.13
(Q12979) RecName: Full=Active breakpoint cluster region-related ... 40 0.13
AB384846_1(AB384846|pid:none) Synthetic construct DNA, clone: pF... 40 0.13
CR628336_1635(CR628336|pid:none) Legionella pneumophila str. Par... 40 0.13
(A6QNS3) RecName: Full=Active breakpoint cluster region-related ... 40 0.13
T26092(T26092) hypothetical protein W02B12.8 - Caenorhabditis el... 40 0.17
BC124044_1(BC124044|pid:none) Xenopus tropicalis T-cell activati... 40 0.17
B47485(B47485)ABR protein 2 - human 40 0.17
BT072468_1(BT072468|pid:none) Salmo salar clone ssal-rgf-526-265... 40 0.17
AF501291_1(AF501291|pid:none) Homo sapiens CARD15-like protein m... 40 0.17
BC151287_1(BC151287|pid:none) Bos taurus NLR family member X1, m... 40 0.23
AP008213_435(AP008213|pid:none) Oryza sativa (japonica cultivar-... 40 0.23
AP003743_2(AP003743|pid:none) Oryza sativa Japonica Group genomi... 40 0.23
AB007925_1(AB007925|pid:none) Homo sapiens mRNA for KIAA0456 pro... 40 0.23
AK293335_1(AK293335|pid:none) Homo sapiens cDNA FLJ61210 complet... 40 0.23
AK169897_1(AK169897|pid:none) Mus musculus NOD-derived CD11c +ve... 40 0.23
BC132872_1(BC132872|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ... 40 0.23
BC152935_1(BC152935|pid:none) Synthetic construct Mus musculus c... 40 0.23
(O75044) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 2... 40 0.23
BC108400_1(BC108400|pid:none) Mus musculus Rho GTPase activating... 40 0.23
AK037710_1(AK037710|pid:none) Mus musculus 16 days neonate thymu... 40 0.23
AK137444_1(AK137444|pid:none) Mus musculus adult male bone cDNA,... 40 0.23
BC144343_1(BC144343|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ... 40 0.23
AK172878_1(AK172878|pid:none) Mus musculus mRNA for mKIAA0053 pr... 40 0.23
(Q74ZH7) RecName: Full=GTPase-activating protein BEM3; &AE01682... 40 0.23
(Q9LJF3) RecName: Full=Serine/threonine-protein kinase BRI1-like... 39 0.30
(Q812A2) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 3... 39 0.30
AK046097_1(AK046097|pid:none) Mus musculus adult male corpora qu... 39 0.30
AM910996_661(AM910996|pid:none) Plasmodium knowlesi strain H chr... 39 0.30
(P32873) RecName: Full=GTPase-activating protein BEM3; AltName: ... 39 0.30
AK228987_1(AK228987|pid:none) Arabidopsis thaliana mRNA for hypo... 39 0.30
(Q8BL80) RecName: Full=Rho GTPase-activating protein 22; AltName... 39 0.30
BX537291_1(BX537291|pid:none) Zebrafish DNA sequence from clone ... 39 0.30
CR382139_806(CR382139|pid:none) Debaryomyces hansenii strain CBS... 39 0.30
CT005260_15(CT005260|pid:none) Leishmania major strain Friedlin,... 39 0.39
(Q5JU00) RecName: Full=T-complex-associated testis-expressed pro... 39 0.39
(Q647I9) RecName: Full=NACHT, LRR and PYD domains-containing pro... 39 0.39
BC168690_1(BC168690|pid:none) Rattus norvegicus SLIT-ROBO Rho GT... 39 0.39
AC116668_42(AC116668|pid:none) Trypanosoma brucei chromosome 5 c... 39 0.39
(Q9V9S7) RecName: Full=Rho GTPase-activating protein 100F; ... 39 0.39
AY897589_3(AY897589|pid:none) Gasterosteus aculeatus ectodysplas... 39 0.50
AY154460_1(AY154460|pid:none) Homo sapiens NALP5 (NALP5) mRNA, c... 39 0.50
(P59047) RecName: Full=NACHT, LRR and PYD domains-containing pro... 39 0.50
CP000080_288(CP000080|pid:none) Leishmania major strain Friedlin... 38 0.66
(Q7Z5H3) RecName: Full=Rho GTPase-activating protein 22; AltName... 38 0.66
AB385228_1(AB385228|pid:none) Synthetic construct DNA, clone: pF... 38 0.66
AM502254_692(AM502254|pid:none) Leishmania infantum chromosome 36. 38 0.66
AK293579_1(AK293579|pid:none) Homo sapiens cDNA FLJ56006 complet... 38 0.66
AK169865_1(AK169865|pid:none) Mus musculus NOD-derived CD11c +ve... 38 0.66
AL672002_4(AL672002|pid:none) Mouse DNA sequence from clone RP23... 38 0.66
BC105510_1(BC105510|pid:none) Bos taurus Rho GTPase activating p... 38 0.66
AC024755_8(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 38 0.66
AK127586_1(AK127586|pid:none) Homo sapiens cDNA FLJ45681 fis, cl... 38 0.66
AK129060_1(AK129060|pid:none) Mus musculus premature mRNA for mK... 38 0.66
AJ720581_1(AJ720581|pid:none) Gallus gallus mRNA for hypothetica... 38 0.66
AK055037_1(AK055037|pid:none) Homo sapiens cDNA FLJ30475 fis, cl... 38 0.66
(Q91Z69) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1... 38 0.66
AK122276_1(AK122276|pid:none) Mus musculus mRNA for mKIAA0411 pr... 38 0.86
CR790375_4(CR790375|pid:none) Zebrafish DNA sequence from clone ... 38 0.86
AC116986_64(AC116986|pid:none) Dictyostelium discoideum chromoso... 38 0.86
AM270414_17(AM270414|pid:none) Aspergillus niger contig An18c022... 38 0.86
EF613347_1(EF613347|pid:none) Danio rerio NOD-like receptor C mR... 37 1.1
AX056907_1(AX056907|pid:none) Sequence 47 from Patent WO0075320.... 37 1.1
AB007871_1(AB007871|pid:none) Homo sapiens KIAA0411 mRNA, partia... 37 1.1
AB384477_1(AB384477|pid:none) Synthetic construct DNA, clone: pF... 37 1.1
CU928178_454(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 37 1.1
T20802(T20802) hypothetical protein F12F6.5 - Caenorhabditis ele... 37 1.1
BC068777_1(BC068777|pid:none) Xenopus laevis hypothetical protei... 37 1.1
CR380956_29(CR380956|pid:none) Candida glabrata strain CBS138 ch... 37 1.5
AY121666_1(AY121666|pid:none) Drosophila melanogaster RE10888 fu... 37 1.5
AF387518_1(AF387518|pid:none) Drosophila melanogaster Rho-GTPase... 37 1.5
CP001102_1274(CP001102|pid:none) Candidatus Amoebophilus asiatic... 37 1.5
BX927072_1(BX927072|pid:none) Zebrafish DNA sequence from clone ... 37 1.5
EU016582_4(EU016582|pid:none) Uncultured marine microorganism HF... 37 1.5
CU638747_1(CU638747|pid:none) Danio rerio cDNA, clone cssl:d0254... 37 1.5
AF251038_1(AF251038|pid:none) Homo sapiens GAP-like protein (N61... 37 1.9
AL596136_22(AL596136|pid:none) Mouse DNA sequence from clone RP2... 37 1.9
(Q7Z6B7) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1... 37 1.9
Z68128_1(Z68128|pid:none) H.sapiens C1 gene. 37 1.9
AY313783_1(AY313783|pid:none) Gallus gallus Rho GTPase activatin... 37 1.9
D50921_1(D50921|pid:none) Homo sapiens mRNA for KIAA0131 gene, p... 37 1.9
AK069889_1(AK069889|pid:none) Oryza sativa Japonica Group cDNA c... 37 1.9
T27958(T27958;T27973)hypothetical protein ZK669.1a - Caenorhabdi... 37 1.9
I38100(I38100) rho-GTPase-activating protein 4 - human &X78817_... 37 1.9
T27959(T27959;T27974)hypothetical protein ZK669.1b - Caenorhabdi... 37 1.9
(Q96CN5) RecName: Full=Leucine-rich repeat-containing protein 45... 37 1.9
AK023899_1(AK023899|pid:none) Homo sapiens cDNA FLJ13837 fis, cl... 37 1.9
AM392626_1(AM392626|pid:none) Synthetic construct Homo sapiens c... 37 1.9
CR936847_18(CR936847|pid:none) Mouse DNA sequence from clone DN-... 36 2.5
FN357349_25(FN357349|pid:none) Schistosoma mansoni genome sequen... 36 2.5
AK290396_1(AK290396|pid:none) Homo sapiens cDNA FLJ78435 complet... 36 2.5
D29642_1(D29642|pid:none) Homo sapiens KIAA0053 mRNA, partial cds. 36 2.5
AK297056_1(AK297056|pid:none) Homo sapiens cDNA FLJ51694 complet... 36 2.5
AB383728_1(AB383728|pid:none) Synthetic construct DNA, clone: pF... 36 2.5
AC097495_2(AC097495|pid:none) Homo sapiens BAC clone RP11-304A15... 36 2.5
EU340329_1(EU340329|pid:none) Macaca mulatta NLR family pyrin do... 36 2.5
(Q6PEI3) RecName: Full=Phosphatase and actin regulator 4; &BC05... 36 2.5
CP001337_21(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ... 36 2.5
Z99261_8(Z99261|pid:none) S.pombe chromosome I cosmid c56E4. 36 2.5
AF071546_1(AF071546|pid:none) Mus musculus ribonuclease/angiogen... 36 2.5
(P10775) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 36 2.5
AY631396_1(AY631396|pid:none) Rattus norvegicus GTPase activatin... 36 2.5
AK298669_1(AK298669|pid:none) Homo sapiens cDNA FLJ61332 complet... 36 2.5
AC116305_32(AC116305|pid:none) Dictyostelium discoideum chromoso... 36 2.5
BC079089_1(BC079089|pid:none) Rattus norvegicus Rho GTPase activ... 36 2.5
EU183367_1(EU183367|pid:none) Branchiostoma japonicum isolate lj... 36 2.5
M58700_1(M58700|pid:none) Pig ribonuclease inhibitor (RI) mRNA, ... 36 2.5
(Q9UTM5) RecName: Full=Uncharacterized protein C1420.01c; &CU32... 36 2.5
AK315453_1(AK315453|pid:none) Homo sapiens cDNA, FLJ96511. 36 2.5
AK303591_1(AK303591|pid:none) Homo sapiens cDNA FLJ59112 complet... 36 2.5
U24189_3(U24189|pid:none) Caenorhabditis elegans hypothetical pr... 36 3.3
(Q4R642) RecName: Full=T-complex-associated testis-expressed pro... 36 3.3
JC5437(JC5437)spliceosome-associated protein 49 - Caenorhabditis... 36 3.3
(Q1E0A3) RecName: Full=Metacaspase-1; EC=3.4.22.-; Flag... 36 3.3
BT061752_1(BT061752|pid:none) Zea mays full-length cDNA clone ZM... 36 3.3
AB195466_1(AB195466|pid:none) Sus scrofa Nod2 mRNA for nucleotid... 36 3.3
CU638744_374(CU638744|pid:none) Podospora anserina genomic DNA c... 36 3.3
CT005272_438(CT005272|pid:none) Leishmania major strain Friedlin... 36 3.3
EU344966_1(EU344966|pid:none) Macaca mulatta NLR family pyrin do... 36 3.3
X51862_1(X51862|pid:none) Duck adapted Rous sarcoma virus (Pr-RS... 36 3.3
BX470224_4(BX470224|pid:none) Zebrafish DNA sequence from clone ... 36 3.3
BC151274_1(BC151274|pid:none) Bos taurus Rho GTPase activating p... 36 3.3
(Q09442) RecName: Full=Splicing factor 3B subunit 4; AltName: Fu... 36 3.3
CP001612_655(CP001612|pid:none) Rickettsia africae ESF-5, comple... 36 3.3
(Q8TEU9) RecName: Full=NACHT, LRR and PYD domains-containing pro... 35 4.3
AM920429_120(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 35 4.3
AY013303_1(AY013303|pid:none) Avian leukosis virus strain ev-1, ... 35 4.3
AF468522_1(AF468522|pid:none) Homo sapiens NALP3 long isoform (N... 35 4.3
(Q17R89) RecName: Full=Rho GTPase-activating protein RICH2; AltN... 35 4.3
(Q9DBZ9) RecName: Full=Rho GTPase-activating protein SYDE1; AltN... 35 4.3
AY237642_1(AY237642|pid:none) Erwinia pyrifoliae HrpW (hrpW) gen... 35 4.3
AJ632302_1(AJ632302|pid:none) Gallus gallus partial TLR7 gene fo... 35 4.3
AJ720504_1(AJ720504|pid:none) Gallus gallus mRNA for hypothetica... 35 4.3
AL606804_2(AL606804|pid:none) Human DNA sequence from clone RP11... 35 4.3
AL606804_3(AL606804|pid:none) Human DNA sequence from clone RP11... 35 4.3
(O94466) RecName: Full=Probable Rho-GTPase-activating protein 7;... 35 4.3
AF054176_1(AF054176|pid:none) Homo sapiens angiotensin/vasopress... 35 4.3
AK314998_1(AK314998|pid:none) Homo sapiens cDNA, FLJ95925, highl... 35 4.3
AB384760_1(AB384760|pid:none) Synthetic construct DNA, clone: pF... 35 4.3
AY092033_1(AY092033|pid:none) Homo sapiens NALP3 intermediate is... 35 4.3
T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi... 35 4.3
AY013304_1(AY013304|pid:none) Avian leukosis virus strain ev-3, ... 35 4.3
AK294538_1(AK294538|pid:none) Homo sapiens cDNA FLJ58097 complet... 35 4.3
(Q5VT97) RecName: Full=Rho GTPase-activating protein SYDE2; AltN... 35 5.6
BC102768_1(BC102768|pid:none) Bos taurus ribonuclease/angiogenin... 35 5.6
(A1CQZ4) RecName: Full=Protein sds23; 35 5.6
(Q8CIM1) RecName: Full=Leucine-rich repeat-containing protein 45... 35 5.6
CP001334_266(CP001334|pid:none) Micromonas sp. RCC299 chromosome... 35 5.6
AY013305_1(AY013305|pid:none) Avian leukosis virus strain ev-6 e... 35 5.6
BC144562_1(BC144562|pid:none) Homo sapiens ArfGAP with RhoGAP do... 35 5.6
AL672002_9(AL672002|pid:none) Mouse DNA sequence from clone RP23... 35 5.6
AY266455_1(AY266455|pid:none) Synthetic construct leucine-rich r... 35 7.3
EU832118_1(EU832118|pid:none) Synthetic construct Homo sapiens c... 35 7.3
A43932(A49963;A45106;B45106;A43932;B33532;A61257;PQ0328;)mucin 2... 35 7.3
(Q9NYF5) RecName: Full=Protein FAM13B; AltName: Full=GAP-like pr... 35 7.3
AL935065_9(AL935065|pid:none) Zebrafish DNA sequence from clone ... 35 7.3
AK314224_1(AK314224|pid:none) Homo sapiens cDNA, FLJ94962. 35 7.3
M94131_1(M94131|pid:none) Human mucin 2 (MUC2) mRNA, partial cds. 35 7.3
AL670305_3(AL670305|pid:none) Mouse DNA sequence from clone RP23... 35 7.3
(Q8K2H3) RecName: Full=Protein FAM13B; &BC031465_1(BC031465|pid... 35 7.3
AL670305_2(AL670305|pid:none) Mouse DNA sequence from clone RP23... 35 7.3
(Q02817) RecName: Full=Mucin-2; Short=MUC-2; AltName: F... 35 7.3
JQ1669(JQ1669) hypothetical 16.1K protein - Pachyphytum sp. &M9... 35 7.3
JE0120(JE0120)glycoprotein A - mouse 35 7.3
AY266456_1(AY266456|pid:none) Synthetic construct leucine-rich r... 35 7.3
(P30544) RecName: Full=Muscarinic acetylcholine receptor M4; &X... 35 7.3
AF039376_1(AF039376|pid:none) Arabidopsis arenosa Evelknievel re... 35 7.3
AM930543_1(AM930543|pid:none) Bos taurus partial LOC507335 gene ... 35 7.3
BC038272_1(BC038272|pid:none) Mus musculus Rho GTPase activating... 35 7.3
AF501292_1(AF501292|pid:none) Homo sapiens CARD15-like protein m... 35 7.3
U15219_1(U15219|pid:none) Saccharomyces cerevisiae Web1p (WEB1) ... 35 7.3
(Q9LE82) RecName: Full=RAN GTPase-activating protein 1; ... 34 9.5
AP011115_6257(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 34 9.5
M12172_1(M12172|pid:none) Rous sarcoma virus (RAV-0 subgroup E) ... 34 9.5
CP000885_3715(CP000885|pid:none) Clostridium phytofermentans ISD... 34 9.5
(Q91VI7) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 34 9.5
CP000684_3(CP000684|pid:none) Rickettsia massiliae MTU5 plasmid ... 34 9.5
AF507033_1(AF507033|pid:none) Avian leukosis virus isolate 26 en... 34 9.5
AY808320_1(AY808320|pid:none) Schistosoma japonicum SJCHGC06399 ... 34 9.5
AL662908_3(AL662908|pid:none) Mouse DNA sequence from clone RP23... 34 9.5
CP000249_2957(CP000249|pid:none) Frankia sp. CcI3, complete geno... 34 9.5
CP000820_2267(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 34 9.5
CP000497_539(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 34 9.5
EU495172_1(EU495172|pid:none) Hepatitis E virus isolate TLS24 po... 34 9.5
AK132965_1(AK132965|pid:none) Mus musculus adult male testis cDN... 34 9.5
AE014296_1621(AE014296|pid:none) Drosophila melanogaster chromos... 34 9.5
AM920433_464(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 34 9.5
>AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil gene,
complete cds.
Length = 1050
Score = 92.4 bits (228), Expect = 3e-17
Identities = 79/273 (28%), Positives = 125/273 (45%), Gaps = 36/273 (13%)
Frame = +3
Query: 3 LLMSNTSP----VYSFLKTSSSSIQTLDFSGNKSTTTKESVIDILSFFKQMSHLQTVNLS 170
L +SNT+P + L + ++T+D S NK TK+ V ++ F S L+ NLS
Sbjct: 363 LNISNTTPSMETIVGALVIGCAELKTIDISDNK--LTKKEVPHLVRFIGASSTLKHFNLS 420
Query: 171 RIQTTPDDLKLLFSPATSLL----------------------------KCSSV---DLSE 257
+ ++LK L TS + K S+V D+SE
Sbjct: 421 GTKVPVENLKELVVAITSNIYLQDVVLDLKNNDLGIAGARMLASLATDKLSNVIYLDVSE 480
Query: 258 NDLGDGGIIKLCEIMYPNSTLHHLSIDGNFK-TKSKLRARAIEALINLIDDNTSIESLSL 434
ND GD G+ +C+ NST+ L ++GNFK +K+K R AIE++I+L++ +E+L +
Sbjct: 481 NDFGDEGVSVICDGFVGNSTIKKLILNGNFKQSKTKSRPSAIESVISLLESECPLETLHM 540
Query: 435 ASGSGKYQXXXXXXXXXXXXXXXXXXXXXDISGNGVGDSGALAVSKILWKNQTLKSLKCD 614
G+ K DISG+ +G GA+ + K L N+TL +L D
Sbjct: 541 TVGNSKSPLKADILSLIYSLATNSSLLELDISGHQMGPKGAIGLGKALQTNKTLHTLIWD 600
Query: 615 GNDFSYTALKMIKCSIRRNEKSLTILQLPLSDI 713
N + + + RN +L + PL+DI
Sbjct: 601 DNLTTAIGFAGFQVGLERN-LTLKNMPTPLNDI 632
Score = 49.7 bits (117), Expect = 2e-04
Identities = 43/190 (22%), Positives = 78/190 (41%)
Frame = +3
Query: 51 SSSIQTLDFSGNKSTTTKESVIDILSFFKQMSHLQTVNLSRIQTTPDDLKLLFSPATSLL 230
SS++ L+ SGNK + + SF + L+T+N+S TTP ++ +
Sbjct: 329 SSTLSYLNLSGNKMEA--DGSAGLSSFLASPNTLKTLNISN--TTPSMETIVGALVIGCA 384
Query: 231 KCSSVDLSENDLGDGGIIKLCEIMYPNSTLHHLSIDGNFKTKSKLRARAIEALINLIDDN 410
+ ++D+S+N L + L + +STL H ++ G +K+ ++ L+ I N
Sbjct: 385 ELKTIDISDNKLTKKEVPHLVRFIGASSTLKHFNLSG-----TKVPVENLKELVVAITSN 439
Query: 411 TSIESLSLASGSGKYQXXXXXXXXXXXXXXXXXXXXXDISGNGVGDSGALAVSKILWKNQ 590
++ + L + D+S N GD G + N
Sbjct: 440 IYLQDVVLDLKNNDLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGNS 499
Query: 591 TLKSLKCDGN 620
T+K L +GN
Sbjct: 500 TIKKLILNGN 509
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,985,993,081
Number of extensions: 39546561
Number of successful extensions: 105479
Number of sequences better than 10.0: 268
Number of HSP's gapped: 104749
Number of HSP's successfully gapped: 301
Length of query: 413
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 282
Effective length of database: 627,191,635
Effective search space: 176868041070
Effective search space used: 176868041070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |