Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U12856-1 (Contig-U12856-1Q) /CSM_Contig/Contig-U12856-1Q.Seq.d (125 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ339548) Dictyostelium discoideum cDNA clone:dda65b22, 5' ... 139 2e-29 1 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 131 6e-27 1 (BX957362) Zebrafish DNA sequence from clone CH211-122F10 in... 50 0.016 1 (BX957235) Zebrafish DNA sequence from clone DKEY-84K17 in l... 50 0.016 1 (BX936404) Zebrafish DNA sequence from clone CH211-237F6 in ... 50 0.016 1 (CU856397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.065 2 (AC135938) Rattus norvegicus clone CH230-345C4, WORKING DRAF... 48 0.065 1 (AC118493) Rattus norvegicus clone CH230-354I10, WORKING DRA... 48 0.065 1 (AC107542) Rattus norvegicus clone CH230-221J16, WORKING DRA... 48 0.065 1 (AC098048) Rattus norvegicus clone CH230-115I10, WORKING DRA... 48 0.065 1 (AQ714021) HS_5397_B2_C10_SP6E RPCI-11 Human Male BAC Librar... 42 0.23 2 (CR381646) Zebrafish DNA sequence from clone DKEY-241L7 in l... 46 0.26 1 (CR339044) Zebrafish DNA sequence from clone CH211-122G23 in... 46 0.26 1 (AC111733) Rattus norvegicus 13 BAC CH230-170L19 (Children's... 46 0.26 1 (CU019620) S.lycopersicum DNA sequence from clone LE_HBa-50I... 46 0.26 1 (AC107049) Homo sapiens BAC clone RP11-163G23 from 4, comple... 46 0.26 1 (AC022274) Homo sapiens BAC clone RP11-697M17 from 8, comple... 46 0.26 1 (AC147858) Macropus eugenii clone ME_KBa-270F7, WORKING DRAF... 46 0.26 1 (AC147734) Macropus eugenii clone ME_KBa-560K2, WORKING DRAF... 46 0.26 1 (AC112612) Rattus norvegicus clone CH230-31F19, WORKING DRAF... 46 0.26 1 (AC106389) Rattus norvegicus clone CH230-140G24, WORKING DRA... 46 0.26 1 (CU682341) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.26 1 (AC087607) Homo sapiens chromosome 4 clone RP11-163G23 map 4... 46 0.26 1 (AC044874) Homo sapiens clone RP11-614N10, WORKING DRAFT SEQ... 46 0.26 1 (CU469427) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.26 1 (CU468853) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.26 1 (CU019553) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.26 1 (CT005269) Leishmania major chromosome 32 strain Friedlin, c... 46 0.26 1 (AL499622) Leishmania major Friedlin assembled shotgun reads... 46 0.26 1 (AC023290) Homo sapiens clone RP11-13P8, WORKING DRAFT SEQUE... 46 0.26 1 (AL285305) Tetraodon nigroviridis genome survey sequence T7 ... 46 0.26 1 (EG327087) EST_903 Caste=Male, Stage=Adult Vespula squamosa ... 46 0.26 1 (AC105753) Homo sapiens chromosome 3 clone RP11-189A1, compl... 38 0.42 3 (AC103170) Rattus norvegicus clone CH230-89F11, WORKING DRAF... 36 0.54 2 (CR790387) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.55 2 (AL627236) Mouse DNA sequence from clone RP23-384G12 on chro... 34 0.55 2 (AC216148) Cavia porcellus clone CH234-57K11, WORKING DRAFT ... 34 0.56 2 (CU302432) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 34 0.56 2 (CU210874) Mouse DNA sequence from clone DN-375D1 on chromos... 34 0.59 2 (AC099775) Homo sapiens chromosome 3 clone RP11-169G24, comp... 38 0.61 3 (CR925704) Zebrafish DNA sequence from clone CH211-156P21 in... 44 1.0 1 (CR854822) Zebrafish DNA sequence from clone DKEY-34K3 in li... 44 1.0 1 (BX927212) Zebrafish DNA sequence from clone CH211-262A5 in ... 44 1.0 1 (BX005109) Zebrafish DNA sequence from clone CH211-284K5 in ... 44 1.0 1 (AM084745) Grus americana microsatellite locus WC-AC-B. 44 1.0 1 (AC163452) Mus musculus chromosome 19, clone RP23-405C7, com... 44 1.0 1 (AC163089) Mus musculus chromosome 5, clone RP23-346P15, com... 44 1.0 1 (AC140320) Mus musculus BAC clone RP23-401C13 from chromosom... 44 1.0 1 (AC140282) Mus musculus BAC clone RP24-501L1 from 1, complet... 44 1.0 1 (AC136710) Mus musculus chromosome 19, clone RP23-35B13, com... 44 1.0 1 (AC132100) Mus musculus BAC clone RP24-294D10 from chromosom... 44 1.0 1 (AC122801) Mus musculus BAC clone RP23-471L3 from chromosome... 44 1.0 1 (AC114342) Mus musculus chromosome 5, clone RP24-143H14, com... 44 1.0 1 (AC217025) Pan troglodytes BAC clone CH251-730F11 from chrom... 44 1.0 1 (AC142323) Pan troglodytes BAC clone RP43-72N8 from chromoso... 44 1.0 1 (AY020848) Oryza sativa microsatellite MRG3173 containing (T... 44 1.0 1 (AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 44 1.0 1 (AP004741) Oryza sativa Japonica Group genomic DNA, chromoso... 44 1.0 1 (AP003525) Oryza sativa Japonica Group genomic DNA, chromoso... 44 1.0 1 (EA707627) Sequence 86506 from patent US 7365185. 44 1.0 1 (DD315064) Primary Rat Hepatocyte Toxicity Modeling. 44 1.0 1 (DQ095178) Otocolobus manul sex-determining region Y protein... 44 1.0 1 (AE014298) Drosophila melanogaster chromosome X, complete se... 44 1.0 1 (AC108481) Drosophila melanogaster 3L BAC RP98-1O19 (Roswell... 44 1.0 1 (AP006287) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 1.0 1 (AL158218) Human DNA sequence from clone RP5-831K15 on chrom... 44 1.0 1 (AC138972) Homo sapiens 3 BAC RP11-1005I1 (Roswell Park Canc... 44 1.0 1 (AC112643) Homo sapiens 3 BAC RP11-328G15 (Roswell Park Canc... 44 1.0 1 (AC080164) Homo sapiens BAC clone RP11-550H11 from 2, comple... 44 1.0 1 (AC027004) Homo sapiens chromosome 15, clone RP11-143C19, co... 44 1.0 1 (AC010387) Homo sapiens chromosome 5 clone CTD-2074D8, compl... 44 1.0 1 (AC006212) Homo sapiens, clone hRPK.14_A_1, complete sequence. 44 1.0 1 (AC162048) Bos taurus clone CH240-111C13, WORKING DRAFT SEQU... 44 1.0 1 (AC156220) Bos taurus clone CH240-49E14, WORKING DRAFT SEQUE... 44 1.0 1 (AC152773) Bos taurus clone CH240-15N19, WORKING DRAFT SEQUE... 44 1.0 1 (AC128528) Rattus norvegicus clone CH230-149A1, *** SEQUENCI... 44 1.0 1 (AC117160) Rattus norvegicus clone CH230-227G23, *** SEQUENC... 44 1.0 1 (AC113912) Rattus norvegicus clone CH230-393M16, WORKING DRA... 44 1.0 1 (AC106488) Rattus norvegicus clone CH230-174D18, WORKING DRA... 44 1.0 1 (AC105800) Rattus norvegicus clone CH230-258G9, *** SEQUENCI... 44 1.0 1 (AC099471) Rattus norvegicus clone CH230-221M23, *** SEQUENC... 44 1.0 1 (AC095756) Rattus norvegicus clone CH230-8D16, WORKING DRAFT... 44 1.0 1 (CU464018) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.0 1 (CU311198) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.0 1 (AP004322) Oryza sativa Japonica Group genomic DNA, chromoso... 44 1.0 1 (AP001201) Homo sapiens genomic DNA, chromosome 11, clone:RP... 44 1.0 1 (AP001191) Homo sapiens genomic DNA, chromosome 11q13 clone:... 44 1.0 1 (AP000592) Homo sapiens genomic DNA, chromosome 11q13 clone:... 44 1.0 1 (AP000586) Homo sapiens genomic DNA, chromosome 11q13 clone:... 44 1.0 1 (AL121812) Drosophila melanogaster clone BACR33H2 WORKING DR... 44 1.0 1 (AC223185) Bos taurus clone CH240-426J15, WORKING DRAFT SEQU... 44 1.0 1 (AC221206) Bos taurus clone CH240-399I22, WORKING DRAFT SEQU... 44 1.0 1 (AC217480) Atelerix albiventris clone LB4-379M5, WORKING DRA... 44 1.0 1 (AC186265) Felis catus clone RP86-2D24, WORKING DRAFT SEQUEN... 44 1.0 1 (AC020052) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 1.0 1 (AC012059) Homo sapiens clone RP11-19A2, WORKING DRAFT SEQUE... 44 1.0 1 (AQ549572) RPCI-11-429A9.TV RPCI-11 Homo sapiens genomic clo... 44 1.0 1 (AQ027933) CIT-HSP-2313J3.TR CIT-HSP Homo sapiens genomic cl... 44 1.0 1 (DH830352) Rattus norvegicus DNA, BAC clone: RNB1-437J05, 3'... 44 1.0 1 (DH668822) Rattus norvegicus DNA, BAC clone: RNB1-217O12, 3'... 44 1.0 1
>(BJ339548) Dictyostelium discoideum cDNA clone:dda65b22, 5' end, single read. Length = 116
Score = 139 bits (70), Expect = 2e-29 Identities = 70/70 (100%) Strand = Plus / Plus
Query: 1 ataatcccatcaaacttttatacatatacacacgcacacactttgtgtatttgtttctca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ataatcccatcaaacttttatacatatacacacgcacacactttgtgtatttgtttctca 60
Query: 61 ttgttatttg 70 |||||||||| Sbjct: 61 ttgttatttg 70
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 89,575,236 Number of extensions: 7078343 Number of successful extensions: 2501501 Number of sequences better than 10.0: 342 Length of query: 125 Length of database: 95,242,211,685 Length adjustment: 22 Effective length of query: 103 Effective length of database: 93,199,600,587 Effective search space: 9599558860461 Effective search space used: 9599558860461 X1: 11 (21.8 bits) S2: 20 (40.1 bits)
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Homology vs Protein |
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