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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12845-1
Contig ID Contig-U12845-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Contig-U12845-1Q.Seq.d
AACAACCACCAATAATTGAAGAGAATGAAGAACAAGAAGAACAAGAGGAA
CAAGAAGAAGTTGGTAGATCAAAAGAAGAAAATCATACANTAAATAATAG
TGGTAGTATTAGTAATAATAAAAATTTANCAAAGAAAAANGGTTCAGNTG
GTGAATCATCTTCATCTTCTTCTTCTTCATTATCATCTTCATCTTCACTT
TCATCATCAGCCTCAAATTCAAATATAAATAATAATTCTAGCGGTAGTAG
TAGTAGTATTAGTANTAATAGTGGCAGTGGTATTAAATTATTACAAATTG
AAAAACAACTTTTATTAAAAGATAATGATTGNTTTGTTGAATTTTGTGAA
AGAAATTTTGCAATGAAATCATATNGAGACAATTTAGAGTTTTTAGATCA
ACCATTATCATGTGTACTCTTAACAAATTTTGAATCAATTGGTATTGAAA
ATTATGGTACTATCACTTCAACTGANACTTTATCTGATAATGGTTTCTTT
ATTTATACTTTATTAAAACAAGATGATAATNATATTAATAATAATAATNA
TAATAATAATAATNNNNNNNNN
Gap no gap
Contig length 572
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4564591
End point 4564029
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U12845
List of clone(s) 

est1=AHQ573F,1,563
Translated Amino Acid sequence 
QPPIIEENEEQEEQEEQEEVGRSKEENHTXNNSGSISNNKNLXKKXGSXGESSSSSSSSL
SSSSSLSSSASNSNINNNSSGSSSSISXNSGSGIKLLQIEKQLLLKDNDXFVEFCERNFA
MKSYXDNLEFLDQPLSCVLLTNFESIGIENYGTITSTXTLSDNGFFIYTLLKQDDNXINN
NNXNNNNXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
nnhq*lkrmknkknkrnkkklvdqkkkiix*iivvvlviikixqrkxvqxvnhlhllllh
yhlhlhfhhqpqiqi*iiilavvvvvlvxivavvlnyyklknnfy*kimixllnfvkeil
q*nhxeti*sf*inhyhvys*qilnqlvlkimvlslqlxlylimvslfily*nkmixili
iixiiiixxx


Frame B:
tttnn*re*rtrrtrgtrrsw*ikrrksyxk**w*y****kfxkekxfxw*iififfffi
iififtfiislkfkyk**f*r****y*x**wqwy*iitn*kttfikr**lxc*il*kkfc
neiixrqfrvfrstiimctlnkf*inwy*klwyyhfn*xfi**wflylyfiktr**xy**
**x****xxx


Frame C:
QPPIIEENEEQEEQEEQEEVGRSKEENHTXNNSGSISNNKNLXKKXGSXGESSSSSSSSL
SSSSSLSSSASNSNINNNSSGSSSSISXNSGSGIKLLQIEKQLLLKDNDXFVEFCERNFA
MKSYXDNLEFLDQPLSCVLLTNFESIGIENYGTITSTXTLSDNGFFIYTLLKQDDNXINN
NNXNNNNXXX
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12845-1 (Contig-U12845-1Q)
/CSM_Contig/Contig-U12845-1Q.Seq.d
         (572 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Conti...   601  e-172
Contig-U11845-1 (Contig-U11845-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U12834-1 (Contig-U12834-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11465-1 (Contig-U11465-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U10946-1 (Contig-U10946-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U04168-1 (Contig-U04168-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U13348-1 (Contig-U13348-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Contig-U12845-1Q.Seq.d
          Length = 572

 Score =  601 bits (303), Expect = e-172
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 210 gcctcaaattcaaatataaataataattctagcggtagtagtagtagtattagtantaat 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gcctcaaattcaaatataaataataattctagcggtagtagtagtagtattagtantaat 269

                                                                       
Query: 270 agtggcagtggtattaaattattacaaattgaaaaacaacttttattaaaagataatgat 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agtggcagtggtattaaattattacaaattgaaaaacaacttttattaaaagataatgat 329

                                                                       
Query: 330 tgntttgttgaattttgtgaaagaaattttgcaatgaaatcatatngagacaatttagag 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgntttgttgaattttgtgaaagaaattttgcaatgaaatcatatngagacaatttagag 389

                                                                       
Query: 390 tttttagatcaaccattatcatgtgtactcttaacaaattttgaatcaattggtattgaa 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttttagatcaaccattatcatgtgtactcttaacaaattttgaatcaattggtattgaa 449

                                                                       
Query: 450 aattatggtactatcacttcaactganactttatctgataatggtttctttatttatact 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aattatggtactatcacttcaactganactttatctgataatggtttctttatttatact 509

                          
Query: 510 ttattaaaacaagat 524
           |||||||||||||||
Sbjct: 510 ttattaaaacaagat 524


 Score =  163 bits (82), Expect = 3e-40
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 61  ttggtagatcaaaagaagaaaatcatacantaaataatagtggtagtattagtaataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttggtagatcaaaagaagaaaatcatacantaaataatagtggtagtattagtaataata 120

                                             
Query: 121 aaaatttancaaagaaaaanggttcagntggtga 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatttancaaagaaaaanggttcagntggtga 154


 Score = 32.2 bits (16), Expect = 0.62
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 248 tagtagtagtattagtantaata 270
           |||| |||||||||||| |||||
Sbjct: 98  tagtggtagtattagtaataata 120


 Score = 32.2 bits (16), Expect = 0.62
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 98  tagtggtagtattagtaataata 120
           |||| |||||||||||| |||||
Sbjct: 248 tagtagtagtattagtantaata 270


 Score = 32.2 bits (16), Expect = 0.62
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  aacaaccaccaataat 16
          ||||||||||||||||
Sbjct: 1  aacaaccaccaataat 16


>Contig-U11845-1 (Contig-U11845-1Q) /CSM_Contig/Contig-U11845-1Q.Seq.d
          Length = 1720

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 93  aataatagtggtagtattagtaat 116
           ||||||||||||||||||||||||
Sbjct: 36  aataatagtggtagtattagtaat 59


>Contig-U12834-1 (Contig-U12834-1Q) /CSM_Contig/Contig-U12834-1Q.Seq.d
          Length = 762

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 243 ggtagtagtagtagtattagtantaatag 271
           |||||||||||||||| ||||| ||||||
Sbjct: 403 ggtagtagtagtagtagtagtaataatag 431


 Score = 34.2 bits (17), Expect = 0.16
 Identities = 26/29 (89%)
 Strand = Plus / Plus

                                        
Query: 98  tagtggtagtattagtaataataaaaatt 126
           |||| |||||| ||||||||||| |||||
Sbjct: 408 tagtagtagtagtagtaataatagaaatt 436


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,617
Number of Sequences: 6905
Number of extensions: 14617
Number of successful extensions: 2469
Number of sequences better than 10.0: 735
length of query: 572
length of database: 5,674,871
effective HSP length: 16
effective length of query: 556
effective length of database: 5,564,391
effective search space: 3093801396
effective search space used: 3093801396
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 4
Homology vs DNA 
Query= Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Contig-U12845-1Q.Seq.d
         (572 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ339267) Dictyostelium discoideum cDNA clone:dda64a19, 5' ...   484   e-177  4
(AC184660) Strongylocentrotus purpuratus clone R3-1103E18, W...    56   0.001  1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   0.022  8
(BX324116) Zebrafish DNA sequence from clone CH211-114G7 in ...    34   0.054  2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    36   0.077  7
(AX346309) Sequence 1380 from Patent WO0200928.                    46   0.082  3
(AL935202) Zebrafish DNA sequence from clone CH211-197E11 in...    50   0.088  1
(AY022368) Oryza sativa microsatellite MRG4693 containing (A...    50   0.088  1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.088  1
(AC129716) Oryza sativa Japonica Group chromosome 5 clone OS...    50   0.088  1
(AC079022) Oryza sativa chromosome 5 clone P0574H01, complet...    50   0.088  1
(EA688487) Sequence 67366 from patent US 7365185.                  50   0.088  1
(AC210050) Zea mays chromosome 10 clone ZMMBBb-186O2; ZMMBBb...    50   0.088  1
(AC182328) Myotis lucifugus clone CH235-327E1, WORKING DRAFT...    50   0.088  1
(AC182327) Myotis lucifugus clone CH235-240N13, WORKING DRAF...    50   0.088  1
(FI072195) CHO_OF7325xh08r1.ab1 CHO_OF7 Nicotiana tabacum ge...    50   0.088  1
(FI050570) CHO_OF6512xg18f1.ab1 CHO_OF6 Nicotiana tabacum ge...    50   0.088  1
(ET978583) CHO_OF692xn21f1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.088  1
(DX249885) OR_ABa0137I01.f OR_ABa Oryza ridleyi genomic clon...    50   0.088  1
(CG071561) PUKED93TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    50   0.088  1
(CG056549) PUIKO19TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    50   0.088  1
(CC428134) PUHPV75TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    50   0.088  1
(BZ317736) hx34d10.g1 WGS-ZmaysF (JM107 adapted methyl filte...    50   0.088  1
(EX629971) 255458614 Pea aphid whole body normalized full le...    42   0.15   2
(EX604926) 255344493 Pea aphid whole body normalized full le...    42   0.15   2
(FF307040) 279367960 Pea aphid whole body normalized full le...    42   0.16   2
(EX652462) 256765547 Pea aphid whole body normalized full le...    42   0.16   2
(FF331951) 280448879 Pea aphid whole body normalized full le...    42   0.17   2
(CU459037) Medicago truncatula chromosome 5 clone mte1-50i15...    38   0.18   4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    44   0.32   9
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.34   8
(AL513345) Mouse DNA sequence from clone RP23-129N7 on chrom...    48   0.35   1
(AC115847) Mus musculus chromosome 5, clone RP24-245J15, com...    48   0.35   1
(AY160099) Dictyostelium discoideum nucleotide exchange fact...    48   0.35   1
(AY128512) Acanthamoeba lenticulata internal transcribed spa...    48   0.35   1
(AC178285) Strongylocentrotus purpuratus clone R3-3094B04, W...    48   0.35   1
(AC176213) Strongylocentrotus purpuratus clone R3-3063M10, W...    48   0.35   1
(AC175951) Strongylocentrotus purpuratus clone R3-17D17, WOR...    48   0.35   1
(DW282483) UI-S-HH0-adj-j-11-0-UI.s1 UI-S-HH0 Euprymna scolo...    48   0.35   1
(AU265766) Dictyostelium discoideum vegetative cDNA clone:VS...    48   0.35   1
(CU914439) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.35   4
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    40   0.44   7
(EV829626) FCOAD14TF Tetrahymena thermophila conjugation cDN...    36   0.52   2
(CT573215) Medicago truncatula chromosome 5 clone mth2-51h23...    38   0.69   3
(DU300649) 1098448250853 CHORI-243 Ovis aries genomic clone ...    34   0.71   3
(EK220306) 1095460138786 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.75   2
(CZ539656) SRAA-aad27a07.g1 Strongyloides ratti whole genome...    36   0.96   2
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    36   0.99   5
(AU062021) Dictyostelium discoideum slug cDNA, clone SLH238.       42   1.2    2
(BM514629) ky05h03.y1 Parastrongyloides trichosuri PA SL1 TO...    38   1.3    2
(BM514758) ky07h12.y1 Parastrongyloides trichosuri PA SL1 TO...    38   1.3    2
(BM514961) kx94b10.y1 Parastrongyloides trichosuri PA SL1 TO...    38   1.3    2
(BX324134) Zebrafish DNA sequence from clone DKEY-103K8 in l...    46   1.4    1
(BX004975) Zebrafish DNA sequence from clone DKEY-14B16.           46   1.4    1
(AC139576) Mus musculus BAC clone RP23-364L23 from chromosom...    46   1.4    1
(AL355173) Human DNA sequence from clone RP11-335P18 on chro...    46   1.4    1
(AC124622) Mus musculus clone RP23-399C4, LOW-PASS SEQUENCE ...    46   1.4    1
(CR936423) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.4    1
(AL162572) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.4    1
(AC199305) Spermophilus tridecemlineatus clone VMRC20-714L12...    46   1.4    1
(DX486549) Cpl28304 Papaya Genomic DNA BAC Library Carica pa...    46   1.4    1
(CZ186965) OA_BBa0107J24.r OA_BBa Oryza alta genomic clone O...    46   1.4    1
(BH780615) fzmb020f006d03f0 fzmb filtered library Zea mays g...    46   1.4    1
(DY892560) CeleSEQ11124 Cunninghamella elegans pBluescript (...    46   1.4    1
(DY889157) CeleSEQ6706 Cunninghamella elegans pBluescript (E...    46   1.4    1
(DY888952) CeleSEQ6395 Cunninghamella elegans pBluescript (E...    46   1.4    1
(DB774792) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.4    1
(DB761785) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.4    1
(BM513985) ky02g06.y2 Parastrongyloides trichosuri PA SL1 TO...    38   1.4    2
(CR854897) Zebrafish DNA sequence from clone DKEY-121N8 in l...    44   1.4    3
(BM513640) kx97c12.y2 Parastrongyloides trichosuri PA SL1 TO...    38   1.4    2
(AF090533) Dictyostelium discoideum unconventional myosin he...    34   1.5    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   1.9    7
(FH089263) CHO_OF3034xb14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   1.9    2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    32   1.9    6
(AB017910) Dictyostelium discoideum myoM gene, complete cds.       34   2.0    3
(CR628328) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   2.2    6
(AC129705) Rattus norvegicus clone CH230-8J12, WORKING DRAFT...    34   2.3    5
(ER534131) 1093015802345 Global-Ocean-Sampling_GS-35-01-01-1...    40   2.3    2
(U60169) Dictyostelium discoideum putative protein kinase Mk...    42   2.3    2
(EJ134543) 1092343588078 Global-Ocean-Sampling_GS-27-01-01-1...    40   2.4    2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    32   2.4    5
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    38   2.4    5
(EK028081) 1092955385639 Global-Ocean-Sampling_GS-31-01-01-1...    32   2.7    3
(BJ323443) Dictyostelium discoideum cDNA clone:dda10i18, 5' ...    38   3.2    2
(AF447590) Hypocrea jecorina mitochondrion, complete genome.       32   3.4    5
(AC098854) Homo sapiens chromosome UNK clone RP11-466D22, WO...    40   3.5    4
(AC193182) Pan troglodytes BAC clone CH251-365G1 from chromo...    42   3.8    3
(EW965549) BRHL_04_I18_T7 Headlice composite library with al...    38   3.8    2
(EU643477) Adineta vaga clone Av_TEL_K_A retrotransposons Ju...    42   4.0    2
(AL732538) Mouse DNA sequence from clone RP23-242O9 on chrom...    40   4.3    3
(DQ832718) Phytophthora ramorum mitochondrion, complete genome.    36   4.3    4
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr...    36   4.4    4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   4.5    9
(AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c...    32   4.6    4
(AC201612) Strongylocentrotus purpuratus clone R3-62K18, WOR...    42   4.7    2
(Z82170) Human DNA sequence from clone RP3-326L13 on chromos...    42   4.8    2
(AY376688) Crinipellis perniciosa mitochondrion, complete ge...    40   4.9    4
(EC819981) SME00004969 esmbsro2 Sawyeria marylandensis cDNA,...    34   5.3    2
(CT025762) Zebrafish DNA sequence from clone CH211-1C14 in l...    44   5.4    1

>(BJ339267) Dictyostelium discoideum cDNA clone:dda64a19, 5' end,
           single read.
          Length = 563

 Score =  484 bits (244), Expect(4) = e-177
 Identities = 253/253 (100%)
 Strand = Plus / Plus


Query: 273 ggcagtggtattaaattattacaaattgaaaaacaacttttattaaaagataatgattgn 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggcagtggtattaaattattacaaattgaaaaacaacttttattaaaagataatgattgn 332


Query: 333 tttgttgaattttgtgaaagaaattttgcaatgaaatcatatngagacaatttagagttt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttgttgaattttgtgaaagaaattttgcaatgaaatcatatngagacaatttagagttt 392


Query: 393 ttagatcaaccattatcatgtgtactcttaacaaattttgaatcaattggtattgaaaat 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttagatcaaccattatcatgtgtactcttaacaaattttgaatcaattggtattgaaaat 452


Query: 453 tatggtactatcacttcaactganactttatctgataatggtttctttatttatacttta 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatggtactatcacttcaactganactttatctgataatggtttctttatttatacttta 512


Query: 513 ttaaaacaagatg 525
           |||||||||||||
Sbjct: 513 ttaaaacaagatg 525

 Score =  119 bits (60), Expect(4) = e-177
 Identities = 72/72 (100%)
 Strand = Plus / Plus


Query: 83  tcatacantaaataatagtggtagtattagtaataataaaaatttancaaagaaaaangg 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tcatacantaaataatagtggtagtattagtaataataaaaatttancaaagaaaaangg 142


Query: 143 ttcagntggtga 154
           ||||||||||||
Sbjct: 143 ttcagntggtga 154

 Score = 67.9 bits (34), Expect(4) = e-177
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 210 gcctcaaattcaaatataaataataattctagcg 243
           ||||||||||||||||||||||||||||||||||
Sbjct: 210 gcctcaaattcaaatataaataataattctagcg 243

 Score = 34.2 bits (17), Expect(4) = e-177
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1  aacaaccaccaataatt 17
          |||||||||||||||||
Sbjct: 1  aacaaccaccaataatt 17

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 509,552,754
Number of extensions: 35342536
Number of successful extensions: 3244448
Number of sequences better than 10.0: 208
Length of query: 572
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 549
Effective length of database: 93,106,754,628
Effective search space: 51115608290772
Effective search space used: 51115608290772
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Contig-U12845-1Q.Seq.d
         (572 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 366,772,226
Number of extensions: 5263952
Number of successful extensions: 10455
Number of sequences better than 10.0: 0
Number of HSP's gapped: 10454
Number of HSP's successfully gapped: 0
Length of query: 190
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 69
Effective length of database: 659,557,225
Effective search space: 45509448525
Effective search space used: 45509448525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U12845-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0