| Contig-U12824-1 |
| Contig ID |
Contig-U12824-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
141 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
2043509 |
| End point |
2043378 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U12824 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 4 |
| Homology vs DNA |
Query= Contig-U12824-1 (Contig-U12824-1Q) /CSM_Contig/Contig-U12824-1Q.Seq.d
(141 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ356396) Dictyostelium discoideum cDNA clone:dda60n01, 3' ... 248 4e-62 1
(FC748322) CBBI3846.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 54 0.001 1
(FC574029) CAXP10847.fwd CAXP Lottia gigantea from head, foo... 52 0.005 1
(CR382125) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 50 0.019 1
(U23729) Schizosaccharomyces pombe cosmid 855, complete sequ... 48 0.075 1
(CU329671) Schizosaccharomyces pombe chromosome II. 48 0.075 1
(AY142010) Arabidopsis thaliana At5g63950/MBM17_5 mRNA, comp... 48 0.075 1
(AF462829) Arabidopsis thaliana AT5g63950/MBM17_5 mRNA, comp... 48 0.075 1
(CQ760398) Sequence 3 from Patent WO2004003014. 48 0.075 1
(CQ760396) Sequence 1 from Patent WO2004003014. 48 0.075 1
(AR898928) Sequence 209 from patent US 7071380. 48 0.075 1
(ER525677) 1093015634754 Global-Ocean-Sampling_GS-35-01-01-1... 46 0.30 1
(BP953871) Euphorbia tirucalli mRNA, clone: ETC011C10, 5' end. 46 0.30 1
(DQ046471) Homo sapiens SMARCA3 gene, VIRTUAL TRANSCRIPT, pa... 44 0.46 2
(EU446704) Synthetic construct Homo sapiens clone IMAGE:1000... 44 0.47 2
(AB209052) Homo sapiens mRNA for SWI/SNF-related matrix-asso... 44 0.47 2
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 42 0.51 2
(AX822005) Sequence 133 from Patent WO03068961. 44 0.52 2
(L34673) Human ATPase, DNA-binding protein (HIP116) mRNA, 3'... 44 0.52 2
(AK291231) Homo sapiens cDNA FLJ76830 complete cds, highly s... 44 0.54 2
(AR550321) Sequence 5452 from patent US 6747137. 44 0.62 2
(EA072269) Sequence 9 from patent US 7183051. 44 0.78 2
(BC044659) Homo sapiens helicase-like transcription factor, ... 44 0.78 2
(Z46606) H.sapiens HLTF gene for helicase-like transcription... 44 0.79 2
(DQ331979) Synthetic construct Saccharomyces cerevisiae clon... 44 1.2 1
(Z35942) S.cerevisiae chromosome II reading frame ORF YBR073w. 44 1.2 1
(X76294) S.cerevisiae (S288C) HSP26, SEC18, UBC4, tRNA-Arg a... 44 1.2 1
(CR382126) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 44 1.2 1
(EA376310) Sequence 25133 from patent US 7314974. 44 1.2 1
(DJ208618) Method for identification of useful proteins deri... 44 1.2 1
(DJ131816) Method for identification of useful proteins deri... 44 1.2 1
(DJ025870) Genome-wide DNA marker of Saccharomyces cerevisiae. 44 1.2 1
(AX072904) Sequence 15 from Patent WO0102550. 44 1.2 1
(U66565) Oryctolagus cuniculus RUSH-1beta mRNA, complete cds. 44 1.2 1
(U66564) Oryctolagus cuniculus RUSH-1alpha mRNA, complete cds. 44 1.2 1
(AF003086) Plasmodium falciparum transcription factor homolo... 44 1.2 1
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 44 1.2 1
(BC030976) Homo sapiens helicase-like transcription factor, ... 44 1.2 1
(BC015498) Homo sapiens helicase-like transcription factor, ... 44 1.2 1
(BC005260) Homo sapiens helicase-like transcription factor, ... 44 1.2 1
(AC138524) Homo sapiens chromosome 5 clone XXyac-4X104D9, WO... 44 1.2 1
(BH163469) ENTSX73TF Entamoeba histolytica Sheared DNA Entam... 44 1.2 1
(BH131690) ENTMZ64TR Entamoeba histolytica Sheared DNA Entam... 44 1.2 1
(AZ546189) ENTDV41TF Entamoeba histolytica Sheared DNA Entam... 44 1.2 1
(AZ530402) ENTBJ64TF Entamoeba histolytica Sheared DNA Entam... 44 1.2 1
(EK442658) 1094693386429 Global-Ocean-Sampling_GS-32-01-01-1... 44 1.2 1
(EK442322) 1094602110210 Global-Ocean-Sampling_GS-32-01-01-1... 44 1.2 1
(AL427400) clone BA0AB018H09 of library BA0AB from strain CL... 44 1.2 1
(DQ046472) Pan troglodytes SMARCA3 gene, VIRTUAL TRANSCRIPT,... 44 1.2 1
(CZ544923) SRAA-aad58g04.b1 Strongyloides ratti whole genome... 44 1.2 1
(BX944642) Arabidopsis thaliana T-DNA flanking sequence GK-7... 44 1.2 1
(EL421223) CHCL9442.b1_C10.ab1 CHC(LMS) Texas blueweed Helia... 44 1.2 1
(DY683478) TTEAL40THB Tetrahymena thermophila EST library, c... 44 1.2 1
(AU062222) Dictyostelium discoideum slug cDNA, clone SLI445. 44 1.2 1
(DA802079) Homo sapiens cDNA clone OCBBF3006425, 5' end, mRN... 44 1.2 1
(DA112997) Homo sapiens cDNA clone BRACE3031086, 5' end, mRN... 44 1.2 1
(CX591532) TTE00019544 Amplicon Express - Conjugative Form T... 44 1.2 1
(CX585756) TTE00021740 Amplicon Express - Conjugative Form T... 44 1.2 1
(CX583904) TTE00028476 Amplicon Express - Conjugative Form T... 44 1.2 1
(CX583497) TTE00025526 Amplicon Express - Conjugative Form T... 44 1.2 1
(CX577012) TTE00017687 Amplicon Express - Conjugative Form T... 44 1.2 1
(CV874246) PDUts1124F05 Porcine testis cDNA library I Sus sc... 44 1.2 1
(CU465030) SSH library morulae embryo subtracted from blasto... 44 1.2 1
(AI971472) wq86g11.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 44 1.2 1
(BX327018) human full-length cDNA 5-PRIME end of clone CS0DC... 44 1.2 1
(BU430038) UI-HF-BN0-aer-b-01-0-UI.r1 NIH_MGC_50 Homo sapien... 44 1.2 1
(BQ424511) AGENCOURT_7919471 NIH_MGC_72 Homo sapiens cDNA cl... 44 1.2 1
(BJ422540) Dictyostelium discoideum cDNA clone:ddv46c08, 5' ... 44 1.2 1
(BJ395549) Dictyostelium discoideum cDNA clone:dds39d09, 5' ... 44 1.2 1
(BJ394719) Dictyostelium discoideum cDNA clone:dds36a12, 5' ... 44 1.2 1
(BJ339261) Dictyostelium discoideum cDNA clone:dda64o18, 5' ... 44 1.2 1
(BJ338383) Dictyostelium discoideum cDNA clone:dda61d11, 5' ... 44 1.2 1
(BJ335026) Dictyostelium discoideum cDNA clone:dda48l16, 5' ... 44 1.2 1
(BJ324907) Dictyostelium discoideum cDNA clone:dda8l17, 5' e... 44 1.2 1
(FF577677) TTED077THB Tetrahymena thermophila conjugation cD... 44 1.2 1
(FF576063) TTEDX14THB Tetrahymena thermophila conjugation cD... 44 1.2 1
(FF571783) TTEBU49THC Tetrahymena thermophila conjugation cD... 44 1.2 1
(FF570707) TTEB653THC Tetrahymena thermophila conjugation cD... 44 1.2 1
(CU468230) Acinetobacter baumannii str. SDF, complete genome. 44 1.2 1
(CU459141) Acinetobacter baumannii str. AYE, complete genome. 44 1.2 1
(CP000863) Acinetobacter baumannii ACICU, complete genome. 44 1.2 1
(CP000521) Acinetobacter baumannii ATCC 17978, complete genome. 44 1.2 1
(AE014133) Streptococcus mutans UA159, complete genome. 44 1.2 1
(AL354833) Human DNA sequence from clone RP11-157L14 on chro... 38 2.5 3
(BX890551) Zebrafish DNA sequence from clone CH211-232K18. 42 4.6 1
(CT010523) Mouse DNA sequence from clone RP23-338E8 on chrom... 42 4.6 1
(AC104542) Mus musculus chromosome 1, clone RP23-165D11, com... 42 4.6 1
(CR380953) Candida glabrata strain CBS138 chromosome G compl... 42 4.6 1
(AB019227) Arabidopsis thaliana genomic DNA, chromosome 5, P... 42 4.6 1
(DJ132380) Method for identification of useful proteins deri... 42 4.6 1
(AR396936) Sequence 2951 from patent US 6617156. 42 4.6 1
(EU783953) Papilio protenor voucher Z-006 NADH dehydrogenase... 42 4.6 1
(EU783951) Papilio clytia voucher Z-004 NADH dehydrogenase s... 42 4.6 1
(AC161415) Mus musculus clone CH36-95K7, *** SEQUENCING IN P... 42 4.6 1
(AC102295) Mus musculus clone RP24-387F13, WORKING DRAFT SEQ... 42 4.6 1
(CU467831) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 4.6 1
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1. 42 4.6 1
(AC231698) Choloepus hoffmanni clone CH281-350F10, WORKING D... 42 4.6 1
(DX385383) Diversa 1104 Library 1 724704_F Library1 Area3 FB... 42 4.6 1
(BX944643) Arabidopsis thaliana T-DNA flanking sequence GK-7... 42 4.6 1
>(BJ356396) Dictyostelium discoideum cDNA clone:dda60n01, 3' end,
single read.
Length = 132
Score = 248 bits (125), Expect = 4e-62
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 11 tttgtagacatgctggtggtattttaggtgatgatatgggtttaggtaaaccaatgcaaa 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tttgtagacatgctggtggtattttaggtgatgatatgggtttaggtaaaccaatgcaaa 73
Query: 71 tttgttcctttttaaatagtatgcncagtcaaggncatattagtcacactcttttggtga 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tttgttcctttttaaatagtatgcncagtcaaggncatattagtcacactcttttggtga 13
Query: 131 tgccagttggt 141
|||||||||||
Sbjct: 12 tgccagttggt 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 130,937,413
Number of extensions: 6900869
Number of successful extensions: 1941820
Number of sequences better than 10.0: 111
Length of query: 141
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 119
Effective length of database: 93,199,600,587
Effective search space: 11090752469853
Effective search space used: 11090752469853
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)
|
| protein update |
2009. 7. 4 |
| Homology vs Protein |
Query= Contig-U12824-1 (Contig-U12824-1Q) /CSM_Contig/Contig-U12824-1Q.Seq.d
(141 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(A2BGR3) RecName: Full=DNA excision repair protein ERCC-6-like; ... 49 6e-05
(A6QQR4) RecName: Full=DNA excision repair protein ERCC-6-like; ... 48 1e-04
(Q8BHK9) RecName: Full=DNA excision repair protein ERCC-6-like; ... 48 1e-04
AK045113_1(AK045113|pid:none) Mus musculus 9.5 days embryo parth... 48 1e-04
(Q2NKX8) RecName: Full=DNA excision repair protein ERCC-6-like; ... 48 1e-04
AF462829_1(AF462829|pid:none) Arabidopsis thaliana AT5g63950/MBM... 48 1e-04
AB019227_4(AB019227|pid:none) Arabidopsis thaliana genomic DNA, ... 48 1e-04
CR954202_487(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 47 2e-04
BC150168_1(BC150168|pid:none) Danio rerio si:ch211-278b8.3, mRNA... 47 2e-04
AC152349_14(AC152349|pid:none) Medicago truncatula clone mth2-52... 47 3e-04
(Q9UR24) RecName: Full=DNA repair protein rhp26; AltName: Full=R... 47 3e-04
CP001326_138(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 46 5e-04
FN357616_3(FN357616|pid:none) Schistosoma mansoni genome sequenc... 44 0.002
AE016818_282(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 42 0.007
CP000527_1140(CP000527|pid:none) Desulfovibrio vulgaris subsp. v... 42 0.009
CP001197_784(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miy... 42 0.009
CU928180_591(CU928180|pid:none) Kluyveromyces thermotolerans str... 42 0.009
CR954204_225(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 41 0.012
CP000584_211(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.020
CR762493_3(CR762493|pid:none) Zebrafish DNA sequence from clone ... 40 0.020
(Q03468) RecName: Full=DNA excision repair protein ERCC-6; ... 40 0.020
BC167234_1(BC167234|pid:none) Synthetic construct Mus musculus c... 40 0.020
CP001330_7(CP001330|pid:none) Micromonas sp. RCC299 chromosome 1... 40 0.034
AM502232_88(AM502232|pid:none) Leishmania infantum chromosome 14. 40 0.034
CT005253_88(CT005253|pid:none) Leishmania major strain Friedlin,... 39 0.044
CP001358_1521(CP001358|pid:none) Desulfovibrio desulfuricans sub... 39 0.058
FM992695_700(FM992695|pid:none) Candida dubliniensis CD36 chromo... 39 0.058
AE001274_24(AE001274|pid:none) Leishmania major strain Friedlin ... 39 0.058
CP000949_1662(CP000949|pid:none) Pseudomonas putida W619, comple... 39 0.076
AL590451_42(AL590451|pid:none) chromosome IX of strain GB-M1 of ... 38 0.099
BX842650_183(BX842650|pid:none) Bdellovibrio bacteriovorus compl... 38 0.099
AM180252_168(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 38 0.099
AM270386_19(AM270386|pid:none) Aspergillus niger contig An17c004... 38 0.099
BA000028_3075(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 38 0.099
AM466849_5(AM466849|pid:none) Vitis vinifera contig VV78X239622.... 38 0.099
(P40352) RecName: Full=DNA repair and recombination protein RAD2... 38 0.099
FM204883_1795(FM204883|pid:none) Streptococcus equi subsp. equi ... 38 0.13
AM494938_28(AM494938|pid:none) Leishmania braziliensis chromosom... 38 0.13
CP001325_539(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 38 0.13
AE017351_304(AE017351|pid:none) Cryptococcus neoformans var. neo... 38 0.13
AL844507_178(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.13
CP001078_1596(CP001078|pid:none) Clostridium botulinum E3 str. A... 37 0.17
FM204884_316(FM204884|pid:none) Streptococcus equi subsp. zooepi... 37 0.17
AM920436_1774(AM920436|pid:none) Penicillium chrysogenum Wiscons... 37 0.22
FM211187_1402(FM211187|pid:none) Streptococcus pneumoniae ATCC 7... 37 0.22
CP000918_1471(CP000918|pid:none) Streptococcus pneumoniae 70585,... 37 0.22
FM992690_120(FM992690|pid:none) Candida dubliniensis CD36 chromo... 37 0.22
CP001015_1433(CP001015|pid:none) Streptococcus pneumoniae G54, c... 37 0.22
CP001033_1508(CP001033|pid:none) Streptococcus pneumoniae CGSP14... 37 0.22
CR380955_66(CR380955|pid:none) Candida glabrata strain CBS138 ch... 37 0.22
CP000920_1413(CP000920|pid:none) Streptococcus pneumoniae P1031,... 37 0.22
CP000921_1344(CP000921|pid:none) Streptococcus pneumoniae Taiwan... 37 0.22
AM502249_300(AM502249|pid:none) Leishmania infantum chromosome 31. 37 0.22
AE016816_490(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 37 0.29
CR382125_983(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 37 0.29
AE001437_2950(AE001437|pid:none) Clostridium acetobutylicum ATCC... 37 0.29
AM270143_13(AM270143|pid:none) Aspergillus niger contig An07c026... 37 0.29
AP007166_181(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 37 0.29
FN392320_672(FN392320|pid:none) Pichia pastoris GS115 chromosome... 36 0.38
AP007171_293(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 36 0.38
AL021171_1(AL021171|pid:none) Caenorhabditis elegans Fosmid H04D... 36 0.38
T23046(T23046;T23695)hypothetical protein M03C11.8 - Caenorhabdi... 36 0.38
CP000387_1714(CP000387|pid:none) Streptococcus sanguinis SK36, c... 36 0.49
CP000246_1119(CP000246|pid:none) Clostridium perfringens ATCC 13... 36 0.49
AP007175_224(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 36 0.49
AD1643(AD1643) SNF2-type helicase homolog lin1685 [imported] - L... 36 0.49
CP000312_958(CP000312|pid:none) Clostridium perfringens SM101, c... 36 0.49
AE014133_1573(AE014133|pid:none) Streptococcus mutans UA159, com... 36 0.49
CP000926_1674(CP000926|pid:none) Pseudomonas putida GB-1, comple... 36 0.49
FM992690_238(FM992690|pid:none) Candida dubliniensis CD36 chromo... 36 0.49
CP000407_1714(CP000407|pid:none) Streptococcus suis 05ZYH33, com... 35 0.64
CP000679_2492(CP000679|pid:none) Caldicellulosiruptor saccharoly... 35 0.64
AC105379_56(AC105379|pid:none) Trypanosoma brucei chromosome 3 c... 35 0.64
AP006840_2670(AP006840|pid:none) Symbiobacterium thermophilum IA... 35 0.64
AE017262_1649(AE017262|pid:none) Listeria monocytogenes str. 4b ... 35 0.64
(Q9H4L7) RecName: Full=SWI/SNF-related matrix-associated actin-d... 35 0.84
CP001132_1040(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 35 0.84
CP000139_3630(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 35 0.84
AP004367_8(AP004367|pid:none) Oryza sativa Japonica Group genomi... 35 0.84
AK301668_1(AK301668|pid:none) Homo sapiens cDNA FLJ58701 complet... 35 0.84
AB032948_1(AB032948|pid:none) Homo sapiens mRNA for KIAA1122 pro... 35 0.84
AE017348_138(AE017348|pid:none) Cryptococcus neoformans var. neo... 35 0.84
BC042442_1(BC042442|pid:none) Mus musculus SWI/SNF-related, matr... 35 0.84
AL359929_1(AL359929|pid:none) Homo sapiens mRNA; cDNA DKFZp762K2... 35 0.84
FM180568_2622(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 35 0.84
CR954217_197(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 35 0.84
AE009951_1736(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 35 0.84
(Q04692) RecName: Full=SWI/SNF-related matrix-associated actin-d... 35 0.84
AB385429_1(AB385429|pid:none) Synthetic construct DNA, clone: pF... 35 0.84
FN357585_11(FN357585|pid:none) Schistosoma mansoni genome sequen... 35 1.1
AE014296_3433(AE014296|pid:none) Drosophila melanogaster chromos... 35 1.1
CP000926_4723(CP000926|pid:none) Pseudomonas putida GB-1, comple... 35 1.1
CU633900_1017(CU633900|pid:none) Podospora anserina genomic DNA ... 35 1.1
AF119716_1(AF119716|pid:none) Drosophila melanogaster dMi-2 prot... 35 1.1
AF308445_1(AF308445|pid:none) Caenorhabditis elegans LET-418 (le... 34 1.4
CP001322_3009(CP001322|pid:none) Desulfatibacillum alkenivorans ... 34 1.4
AB169326_1(AB169326|pid:none) Macaca fascicularis testis cDNA, c... 34 1.4
AM494962_161(AM494962|pid:none) Leishmania braziliensis chromoso... 34 1.4
CP000724_578(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 34 1.4
CP000312_1562(CP000312|pid:none) Clostridium perfringens SM101, ... 34 1.4
CP001078_1985(CP001078|pid:none) Clostridium botulinum E3 str. A... 34 1.4
CP000435_2719(CP000435|pid:none) Synechococcus sp. CC9311, compl... 34 1.4
CP001056_2269(CP001056|pid:none) Clostridium botulinum B str. Ek... 34 1.4
CR382123_230(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 34 1.4
AC152349_12(AC152349|pid:none) Medicago truncatula clone mth2-52... 34 1.4
CP000725_507(CP000725|pid:none) Streptococcus gordonii str. Chal... 34 1.9
AE017333_3682(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 34 1.9
CP001186_1645(CP001186|pid:none) Bacillus cereus G9842, complete... 34 1.9
U91543_1(U91543|pid:none) Homo sapiens zinc-finger helicase (hZF... 34 1.9
AK153826_1(AK153826|pid:none) Mus musculus 2 days neonate thymus... 34 1.9
CP000698_592(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 34 1.9
CP000094_3863(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 34 1.9
(Q14839) RecName: Full=Chromodomain-helicase-DNA-binding protein... 34 1.9
CP001029_3057(CP001029|pid:none) Methylobacterium populi BJ001, ... 34 1.9
AF217319_1(AF217319|pid:none) Mus musculus putative repair and r... 34 1.9
BC046866_1(BC046866|pid:none) Xenopus laevis chromodomain helica... 34 1.9
BC155799_1(BC155799|pid:none) Danio rerio wu:fd12d03, mRNA (cDNA... 34 1.9
CR382133_515(CR382133|pid:none) Debaryomyces hansenii strain CBS... 34 1.9
AE017282_2546(AE017282|pid:none) Methylococcus capsulatus str. B... 34 1.9
BC133719_1(BC133719|pid:none) Xenopus tropicalis chromodomain he... 34 1.9
FJ362379_7(FJ362379|pid:none) Caenorhabditis sp. PS1010 contig J... 34 1.9
AY903245_1(AY903245|pid:none) Rattus norvegicus strain WHD chrom... 34 1.9
BA000016_1625(BA000016|pid:none) Clostridium perfringens str. 13... 34 1.9
AL596125_1(AL596125|pid:none) Mouse DNA sequence from clone RP23... 34 1.9
CP000721_2607(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 34 1.9
(Q12873) RecName: Full=Chromodomain-helicase-DNA-binding protein... 34 1.9
BC149495_1(BC149495|pid:none) Bos taurus hypothetical LOC789977,... 34 1.9
CP000903_1641(CP000903|pid:none) Bacillus weihenstephanensis KBA... 34 1.9
BA000026_905(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 34 1.9
AE016830_2507(AE016830|pid:none) Enterococcus faecalis V583, com... 34 1.9
(Q6PDQ2) RecName: Full=Chromodomain-helicase-DNA-binding protein... 34 1.9
AY903247_1(AY903247|pid:none) Rattus norvegicus strain SHRSP chr... 34 1.9
AK220473_1(AK220473|pid:none) Mus musculus mRNA for mKIAA4075 pr... 34 1.9
(P36607) RecName: Full=DNA repair protein rad5; EC=3.6.... 34 1.9
BC156472_1(BC156472|pid:none) Synthetic construct Homo sapiens c... 34 1.9
CT005264_212(CT005264|pid:none) Leishmania major strain Friedlin... 34 1.9
AL596125_2(AL596125|pid:none) Mouse DNA sequence from clone RP23... 34 1.9
CP000943_867(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 34 1.9
CU640366_1340(CU640366|pid:none) Podospora anserina genomic DNA ... 33 2.4
AE004092_249(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c... 33 2.4
CP000712_3543(CP000712|pid:none) Pseudomonas putida F1, complete... 33 2.4
(Q10332) RecName: Full=Uncharacterized ATP-dependent helicase C5... 33 2.4
CP000259_288(CP000259|pid:none) Streptococcus pyogenes MGAS9429,... 33 2.4
CP000829_259(CP000829|pid:none) Streptococcus pyogenes NZ131, co... 33 2.4
AM746676_2993(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 33 2.4
(O60177) RecName: Full=Uncharacterized ATP-dependent helicase C2... 33 2.4
AL807369_10(AL807369|pid:none) Neurospora crassa DNA linkage gro... 33 2.4
AM295007_1544(AM295007|pid:none) Streptococcus pyogenes Manfredo... 33 2.4
CP000023_231(CP000023|pid:none) Streptococcus thermophilus LMG 1... 33 2.4
CP000542_102(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 33 2.4
AM920435_725(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 33 2.4
AL766852_109(AL766852|pid:none) Streptococcus agalactiae NEM316 ... 33 2.4
AE009949_253(AE009949|pid:none) Streptococcus pyogenes MGAS8232,... 33 2.4
CP000003_316(CP000003|pid:none) Streptococcus pyogenes MGAS10394... 33 2.4
BX294153_294(BX294153|pid:none) Rhodopirellula baltica SH 1 comp... 33 2.4
CP000017_288(CP000017|pid:none) Streptococcus pyogenes MGAS5005,... 33 2.4
AP007151_1229(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 33 2.4
AB185399_1(AB185399|pid:none) Elaphe quadrivirgata CHD1 mRNA for... 33 3.2
AL110281_1(AL110281|pid:none) Homo sapiens mRNA; cDNA DKFZp434K2... 33 3.2
AL117491_1(AL117491|pid:none) Homo sapiens mRNA; cDNA DKFZp434N2... 33 3.2
(O14646) RecName: Full=Chromodomain-helicase-DNA-binding protein... 33 3.2
AF181828_1(AF181828|pid:none) Nymphicus hollandicus chromosome Z... 33 3.2
CS300694_1(CS300694|pid:none) Sequence 202 from Patent EP1661986. 33 3.2
AL031847_16(AL031847|pid:none) Human DNA sequence from clone RP1... 33 3.2
AP008955_3688(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 33 3.2
U80033_2(U80033|pid:none) Caenorhabditis elegans cosmid T23H2, c... 33 3.2
BX908798_375(BX908798|pid:none) Parachlamydia-related symbiont U... 33 3.2
BC115822_1(BC115822|pid:none) Mus musculus chromodomain helicase... 33 3.2
AF181824_1(AF181824|pid:none) Aegolius funereus chromosome W chr... 33 3.2
CP001291_3713(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 33 3.2
AY217131_1(AY217131|pid:none) Taeniopygia guttata chromo-helicas... 33 3.2
CP000612_3196(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 33 3.2
AK140386_1(AK140386|pid:none) Mus musculus 4 days neonate thymus... 33 3.2
(Q22516) RecName: Full=Chromodomain-helicase-DNA-binding protein... 33 3.2
(P40201) RecName: Full=Chromodomain-helicase-DNA-binding protein... 33 3.2
FM992690_580(FM992690|pid:none) Candida dubliniensis CD36 chromo... 33 3.2
CU638743_161(CU638743|pid:none) Podospora anserina genomic DNA c... 33 3.2
GN099095_1(GN099095|pid:none) Sequence 3876 from Patent WO200903... 33 3.2
CP001033_1597(CP001033|pid:none) Streptococcus pneumoniae CGSP14... 33 3.2
CP001393_430(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 33 3.2
AB326217_1(AB326217|pid:none) Gekko hokouensis CHD1 mRNA for chr... 33 3.2
(Q8TDI0) RecName: Full=Chromodomain-helicase-DNA-binding protein... 33 3.2
AF007780_1(AF007780|pid:none) Drosophila melanogaster CHD3 mRNA,... 33 3.2
BC117134_1(BC117134|pid:none) Homo sapiens chromodomain helicase... 33 3.2
AK127046_1(AK127046|pid:none) Homo sapiens cDNA FLJ45103 fis, cl... 33 3.2
CP001348_3358(CP001348|pid:none) Clostridium cellulolyticum H10,... 33 4.2
CP000227_1715(CP000227|pid:none) Bacillus cereus Q1, complete ge... 33 4.2
AM270295_23(AM270295|pid:none) Aspergillus niger contig An13c001... 33 4.2
CP001177_1757(CP001177|pid:none) Bacillus cereus AH187, complete... 33 4.2
FJ515838_1(FJ515838|pid:none) Homo sapiens isolate CHD2-VI-T chr... 33 4.2
AE017194_1865(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 33 4.2
CP000680_3217(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 33 4.2
AK292850_1(AK292850|pid:none) Homo sapiens cDNA FLJ76689 partial... 33 4.2
BX569695_171(BX569695|pid:none) Synechococcus sp. WH8102 complet... 33 4.2
AM743169_619(AM743169|pid:none) Stenotrophomonas maltophilia K27... 33 4.2
AF006514_1(AF006514|pid:none) Homo sapiens CHD2 mRNA, complete c... 33 4.2
AM180355_2250(AM180355|pid:none) Clostridium difficile 630 compl... 33 4.2
CP000554_2812(CP000554|pid:none) Prochlorococcus marinus str. MI... 33 4.2
CR382126_326(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 33 4.2
BX548175_2777(BX548175|pid:none) Prochlorococcus marinus MIT9313... 33 4.2
CP000083_3297(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 33 4.2
CR382132_1194(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 33 4.2
AL939122_130(AL939122|pid:none) Streptomyces coelicolor A3(2) co... 33 4.2
AP006618_1038(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 33 4.2
CP000681_1360(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 33 4.2
CP001283_1762(CP001283|pid:none) Bacillus cereus AH820, complete... 33 4.2
(Q7S1P9) RecName: Full=DNA repair protein rad-5; EC=3.6... 33 4.2
S32349(S32349)probable SNF2-type helicase - Bacillus cereus (fra... 33 4.2
AF016425_4(AF016425|pid:none) Caenorhabditis elegans cosmid F59A... 33 4.2
CP001407_1653(CP001407|pid:none) Bacillus cereus 03BB102, comple... 33 4.2
CR382139_133(CR382139|pid:none) Debaryomyces hansenii strain CBS... 33 4.2
AB261104_1(AB261104|pid:none) Neurospora crassa ncrad5b gene for... 33 4.2
AP009552_236(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 32 5.4
AM412317_1579(AM412317|pid:none) Clostridium botulinum A str. AT... 32 5.4
AM270180_11(AM270180|pid:none) Aspergillus niger contig An08c025... 32 5.4
CP000500_641(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 32 5.4
CU928175_690(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 32 5.4
CP000444_2666(CP000444|pid:none) Shewanella sp. MR-7, complete g... 32 5.4
CP001032_3491(CP001032|pid:none) Opitutus terrae PB90-1, complet... 32 5.4
CP000728_1567(CP000728|pid:none) Clostridium botulinum F str. La... 32 5.4
CP000939_1604(CP000939|pid:none) Clostridium botulinum B1 str. O... 32 5.4
CP000230_208(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 32 5.4
AE015450_702(AE015450|pid:none) Mycoplasma gallisepticum strain ... 32 5.4
(P22082) RecName: Full=Transcription regulatory protein SNF2; ... 32 5.4
CP000446_2609(CP000446|pid:none) Shewanella sp. MR-4, complete g... 32 5.4
BC091795_1(BC091795|pid:none) Danio rerio hypothetical protein L... 32 5.4
CP001344_1385(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 32 5.4
CP000302_2211(CP000302|pid:none) Shewanella denitrificans OS217,... 32 5.4
AC022521_5(AC022521|pid:none) Arabidopsis thaliana chromosome I ... 32 5.4
AP009256_963(AP009256|pid:none) Bifidobacterium adolescentis ATC... 32 5.4
AE016853_2062(AE016853|pid:none) Pseudomonas syringae pv. tomato... 32 5.4
CP000891_1493(CP000891|pid:none) Shewanella baltica OS195, compl... 32 5.4
AP007155_390(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 32 5.4
CP000117_3259(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 32 5.4
CP000058_1768(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 32 5.4
CP001147_629(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 32 5.4
CP001083_1615(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 32 5.4
AP008230_1384(AP008230|pid:none) Desulfitobacterium hafniense Y5... 32 5.4
CP000563_1452(CP000563|pid:none) Shewanella baltica OS155, compl... 32 5.4
CR940353_74(CR940353|pid:none) Theileria annulata strain Ankara ... 32 5.4
AE014299_1619(AE014299|pid:none) Shewanella oneidensis MR-1, com... 32 5.4
CP000447_1290(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 32 5.4
CP000502_77(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 32 5.4
CR380953_402(CR380953|pid:none) Candida glabrata strain CBS138 c... 32 5.4
CP001114_978(CP001114|pid:none) Deinococcus deserti VCD115, comp... 32 5.4
AE017126_47(AE017126|pid:none) Prochlorococcus marinus subsp. ma... 32 7.1
AP008957_3966(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 32 7.1
(B0R0I6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 32 7.1
AM910983_149(AM910983|pid:none) Plasmodium knowlesi strain H chr... 32 7.1
CP000500_338(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 32 7.1
BX294133_5(BX294133|pid:none) Rhodopirellula baltica SH 1 comple... 32 7.1
AL807792_3(AL807792|pid:none) Zebrafish DNA sequence from clone ... 32 7.1
AB018119_14(AB018119|pid:none) Arabidopsis thaliana genomic DNA,... 32 7.1
AB284258_1(AB284258|pid:none) Brassica rapa DDM1 gene for decrea... 32 7.1
AB168179_1(AB168179|pid:none) Macaca fascicularis testis cDNA cl... 32 7.1
(Q6CA87) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 32 7.1
BT067025_1(BT067025|pid:none) Zea mays full-length cDNA clone ZM... 32 7.1
AM412317_1651(AM412317|pid:none) Clostridium botulinum A str. AT... 32 7.1
CP000962_1736(CP000962|pid:none) Clostridium botulinum A3 str. L... 32 7.1
AE005176_2042(AE005176|pid:none) Lactococcus lactis subsp. lacti... 32 7.1
CP001083_1772(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 32 7.1
(Q6BKC2) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 32 7.1
AP009046_108(AP009046|pid:none) Hyphantria cunea nucleopolyhedro... 32 7.1
AP003727_27(AP003727|pid:none) Oryza sativa Japonica Group genom... 32 7.1
AY699010_1(AY699010|pid:none) Arabidopsis thaliana SWI2/SNF2-lik... 32 7.1
AL928674_21(AL928674|pid:none) Zebrafish DNA sequence from clone... 32 7.1
CP000878_51(CP000878|pid:none) Prochlorococcus marinus str. MIT ... 32 7.1
CU633873_4(CU633873|pid:none) Podospora anserina genomic DNA chr... 32 7.1
CP000939_1673(CP000939|pid:none) Clostridium botulinum B1 str. O... 32 7.1
AY699011_1(AY699011|pid:none) Arabidopsis thaliana SWI2/SNF2-lik... 32 7.1
T09676(T09676;I64201)probable ATP-dependent RNA helicase (EC 3.6... 32 7.1
(P47264) RecName: Full=Uncharacterized ATP-dependent helicase MG... 32 7.1
AM406671_2273(AM406671|pid:none) Lactococcus lactis subsp. cremo... 32 7.1
(Q9Y620) RecName: Full=DNA repair and recombination protein RAD5... 32 7.1
CP000096_872(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 32 7.1
AE017349_101(AE017349|pid:none) Cryptococcus neoformans var. neo... 32 7.1
FM992689_189(FM992689|pid:none) Candida dubliniensis CD36 chromo... 32 7.1
AE001437_3384(AE001437|pid:none) Clostridium acetobutylicum ATCC... 32 7.1
(P75093) RecName: Full=Uncharacterized ATP-dependent helicase MP... 32 7.1
AB331397_1(AB331397|pid:none) Brassica rapa DDM1b gene for decre... 32 7.1
AF461813_1(AF461813|pid:none) Zea mays chromatin complex subunit... 32 7.1
FN392320_97(FN392320|pid:none) Pichia pastoris GS115 chromosome ... 32 7.1
CP001326_123(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 32 7.1
CR382131_173(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 32 9.3
(Q6C2R8) RecName: Full=DNA repair protein RAD5; EC=3.6.... 32 9.3
AE016817_55(AE016817|pid:none) Ashbya gossypii (= Eremothecium g... 32 9.3
(Q08562) RecName: Full=ATP-dependent helicase ULS1; EC=... 32 9.3
AP009152_1813(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 32 9.3
AB018352_1(AB018352|pid:none) Homo sapiens mRNA for KIAA0809 pro... 32 9.3
CR761668_1(CR761668|pid:none) Xenopus tropicalis finished cDNA, ... 32 9.3
CU633899_2(CU633899|pid:none) Podospora anserina genomic DNA chr... 32 9.3
CP000806_1351(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 32 9.3
BC044266_1(BC044266|pid:none) Xenopus laevis similar to steroid ... 32 9.3
AP008215_745(AP008215|pid:none) Oryza sativa (japonica cultivar-... 32 9.3
Z81089_4(Z81089|pid:none) Caenorhabditis elegans Cosmid F53H4, c... 32 9.3
AM746676_4562(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 32 9.3
AM181176_1524(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 32 9.3
CP001071_906(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 32 9.3
DQ987499_1(DQ987499|pid:none) Gibberella zeae RING-13 protein mR... 32 9.3
CP000113_7101(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 32 9.3
CP000512_2783(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 32 9.3
AC146936_20(AC146936|pid:none) Oryza sativa (japonica cultivar-g... 32 9.3
CR382132_1235(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 32 9.3
AP005419_19(AP005419|pid:none) Oryza sativa Japonica Group genom... 32 9.3
(A4IHD2) RecName: Full=Helicase ARIP4; EC=3.6.1.-; AltN... 32 9.3
AE014134_1792(AE014134|pid:none) Drosophila melanogaster chromos... 32 9.3
>(A2BGR3) RecName: Full=DNA excision repair protein ERCC-6-like;
EC=3.6.1.-; AltName: Full=ATP-dependent helicase
ERCC6-like; &BX510925_2(BX510925|pid:none)
&BX510925_3(BX510925|pid:none)
&CR391924_1(CR391924|pid:none)
Length = 1451
Score = 48.9 bits (115), Expect = 6e-05
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +1
Query: 25 GGILGDDMGLGKPMQICSFLNSMXSQGHISHTLLVMP 135
GGIL DDMGLGK +Q+ SFL+ M +HTLLVMP
Sbjct: 126 GGILADDMGLGKTIQVISFLSGMYDAELANHTLLVMP 162
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 193,007,327
Number of extensions: 2840520
Number of successful extensions: 5865
Number of sequences better than 10.0: 306
Number of HSP's gapped: 5865
Number of HSP's successfully gapped: 306
Length of query: 47
Length of database: 1,051,180,864
Length adjustment: 20
Effective length of query: 27
Effective length of database: 986,449,684
Effective search space: 26634141468
Effective search space used: 26634141468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
1 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |