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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12809-1
Contig ID Contig-U12809-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12809-1 (Contig-U12809-1Q) /CSM_Contig/Contig-U12809-1Q.Seq.d
AATAATATTTTATATTCACAATTTTTTATATATATTTTTTTTTACCCATT
TTACATTCTATTTAATTTTATTTAAATATTTCCAAATCCACTTCTTTTAT
TATTATTTTTTATTTTTTTAATTTTTCTTTTCAAATTTAATTATTTAATT
AATCATTTTTATTCTCGGTTTCTACAATTGTTTAGAAACGAATTAAAGAG
AATAAAAAACATAACATAGCGTCTAATACAAATAATACTCTTTTAACTAG
TAGTAGTAGTAGTAGTGATAGTGATTCTGACCACGCCGATGAAGACAAAT
TAGAAGAACAGGATATTGATAATAATAATAATAATAATAATAACAATAAT
AATATAGAAGAAAATAAACCACCAGATTTAAATCAAAGTAGTAATAGTGA
TAGTGATAGTGAAGAATTAGAAACAACATTACAACCACCAACACCACCGC
CACCTTATTCAGAAGTTGAAAATAATATAGAACCACCACCATTACAAATT
AGTTCAAGTGAAACTGACTCGCCAACACATTCATTAGATAGTAGTGACAA
TAATAGTATTGTTGGTTCTGATATAAATAATAAAAGTGATAAAGAAGAAA
AATCACCAACTCTTGCTAATAATAATAATAATAATAATAATATAGATAAT
AATAATAAAGATAATAGTCAAGATAATAATAAAGATAATAATAATCAAGT
TAGTAAACCAATAACAGAGATTGAAATGAGTAGTTTTAGATCAAATCAAA
GTGTTAGTCTTTTACATGATAGACAAAATAAAACATGGCTTTCAACAATT
AAGAATCAATTGATACCAACATCAGGTGATGTTAATGCAGT
Gap no gap
Contig length 841
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2167369
End point 2168209
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 8
Link to clone list U12809
List of clone(s) 

est1=SHD565F,1,605
est2=AHO339F,18,605
est3=AHG737F,44,657
est4=SHD313Z,49,734
est5=CHP765F,144,841
est6=VHJ753F,152,661
est7=SLG416F,166,341
est8=CHK307F,169,734
Translated Amino Acid sequence 
*yfiftifyiyfflpilhsi*fylniskstsfiiifyffnfsfqi*lfn*sflfsvstiv
*KRIKENKKHNIASNTNNTLLTSSSSSSDSDSDHADEDKLEEQDIDNNNNNNNNNNNIEE
NKPPDLNQSSNSDSDSEELETTLQPPTPPPPYSEVENNIEPPPLQISSSETDSPTHSLDS
SDNNSIVGSDINNKSDKEEKSPTLANNNNNNNNIDNNNKDNSQDNNKDNNNQVSKPITEI
EMSSFRSNQSVSLLHDRQNKTWLSTIKNQLIPTSGDVNA
Translated Amino Acid sequence (All Frames) 
Frame A:
nnilysqffiyiffypfyilfnfi*ifpnplllllffifliflfkfnylinhfysrflql
frnelkriknit*rliqiilf*lvvvvvvivilttpmktn*knriliiiiiiiitiii*k
kinhqi*ikvvivivivkn*kqhynhqhhrhliqklkii*nhhhyklvqvkltrqhih*i
vvtiivllvli*iikvikkknhqllliiiiiiii*iiiikiivkiiikiiiiklvnq*qr
lk*vvldqikvlvfymidkikhgfqqlrin*yqhqvmlmq


Frame B:
iifyihnflyifffthftfylilfkyfqihffyyyflff*fffsnlii*liifilgfync
letn*re*kt*hsv*yk*ysfn*********f*prr*rqirrtgy*********q**yrr
k*ttrfksk********rirnnitttnttatlfrs*k*yrtttitn*fk*n*lantfir*
**q**ycwf*yk**k**rrkitnsc********yr****r**sr***r***ss**tnnrd
*ne*f*ikskc*sft**tk*nmafnn*esidtnir*c*cs


Frame C:
*yfiftifyiyfflpilhsi*fylniskstsfiiifyffnfsfqi*lfn*sflfsvstiv
*KRIKENKKHNIASNTNNTLLTSSSSSSDSDSDHADEDKLEEQDIDNNNNNNNNNNNIEE
NKPPDLNQSSNSDSDSEELETTLQPPTPPPPYSEVENNIEPPPLQISSSETDSPTHSLDS
SDNNSIVGSDINNKSDKEEKSPTLANNNNNNNNIDNNNKDNSQDNNKDNNNQVSKPITEI
EMSSFRSNQSVSLLHDRQNKTWLSTIKNQLIPTSGDVNA
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12809-1 (Contig-U12809-1Q)
/CSM_Contig/Contig-U12809-1Q.Seq.d
         (841 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12809-1 (Contig-U12809-1Q) /CSM_Contig/Conti...   515  e-146
Contig-U13303-1 (Contig-U13303-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13108-1 (Contig-U13108-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U14183-1 (Contig-U14183-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U11923-1 (Contig-U11923-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U11734-1 (Contig-U11734-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U08848-1 (Contig-U08848-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U03734-1 (Contig-U03734-1Q) /CSM_Contig/Conti...    36  0.059

>Contig-U12809-1 (Contig-U12809-1Q) /CSM_Contig/Contig-U12809-1Q.Seq.d
          Length = 841

 Score =  515 bits (260), Expect = e-146
 Identities = 260/260 (100%)
 Strand = Plus / Plus

                                                                       
Query: 357 gaagaaaataaaccaccagatttaaatcaaagtagtaatagtgatagtgatagtgaagaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaagaaaataaaccaccagatttaaatcaaagtagtaatagtgatagtgatagtgaagaa 416

                                                                       
Query: 417 ttagaaacaacattacaaccaccaacaccaccgccaccttattcagaagttgaaaataat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttagaaacaacattacaaccaccaacaccaccgccaccttattcagaagttgaaaataat 476

                                                                       
Query: 477 atagaaccaccaccattacaaattagttcaagtgaaactgactcgccaacacattcatta 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atagaaccaccaccattacaaattagttcaagtgaaactgactcgccaacacattcatta 536

                                                                       
Query: 537 gatagtagtgacaataatagtattgttggttctgatataaataataaaagtgataaagaa 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gatagtagtgacaataatagtattgttggttctgatataaataataaaagtgataaagaa 596

                               
Query: 597 gaaaaatcaccaactcttgc 616
           ||||||||||||||||||||
Sbjct: 597 gaaaaatcaccaactcttgc 616


 Score =  289 bits (146), Expect = 2e-78
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                       
Query: 696 caagttagtaaaccaataacagagattgaaatgagtagttttagatcaaatcaaagtgtt 755
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caagttagtaaaccaataacagagattgaaatgagtagttttagatcaaatcaaagtgtt 755

                                                                       
Query: 756 agtcttttacatgatagacaaaataaaacatggctttcaacaattaagaatcaattgata 815
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agtcttttacatgatagacaaaataaaacatggctttcaacaattaagaatcaattgata 815

                                     
Query: 816 ccaacatcaggtgatgttaatgcagt 841
           ||||||||||||||||||||||||||
Sbjct: 816 ccaacatcaggtgatgttaatgcagt 841


 Score =  170 bits (86), Expect = 2e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                       
Query: 162 ttctcggtttctacaattgtttagaaacgaattaaagagaataaaaaacataacatagcg 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttctcggtttctacaattgtttagaaacgaattaaagagaataaaaaacataacatagcg 221

                                     
Query: 222 tctaatacaaataatactcttttaac 247
           ||||||||||||||||||||||||||
Sbjct: 222 tctaatacaaataatactcttttaac 247


 Score =  131 bits (66), Expect = 1e-30
 Identities = 84/93 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  aataatattttatattcacaattttttatatatannnnnnnnnacccattttacattcta 60
          ||||||||||||||||||||||||||||||||||         |||||||||||||||||
Sbjct: 1  aataatattttatattcacaattttttatatatatttttttttacccattttacattcta 60

                                           
Query: 61 tttaattttatttaaatatttccaaatccactt 93
          |||||||||||||||||||||||||||||||||
Sbjct: 61 tttaattttatttaaatatttccaaatccactt 93


 Score =  103 bits (52), Expect = 3e-22
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                               
Query: 267 gatagtgattctgaccacgccgatgaagacaaattagaagaacaggatattg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatagtgattctgaccacgccgatgaagacaaattagaagaacaggatattg 318


 Score = 34.2 bits (17), Expect = 0.23
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 387 agtagtaatagtgatagtgat 407
           ||||||| |||||||||||||
Sbjct: 255 agtagtagtagtgatagtgat 275


>Contig-U13303-1 (Contig-U13303-1Q) /CSM_Contig/Contig-U13303-1Q.Seq.d
          Length = 117

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tatttaattttatttaaata 78
          ||||||||||||||||||||
Sbjct: 15 tatttaattttatttaaata 34


 Score = 30.2 bits (15), Expect = 3.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                         
Query: 64 aattttatttaaata 78
          |||||||||||||||
Sbjct: 39 aattttatttaaata 25


>Contig-U13108-1 (Contig-U13108-1Q) /CSM_Contig/Contig-U13108-1Q.Seq.d
          Length = 135

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tatttaattttatttaaata 78
          ||||||||||||||||||||
Sbjct: 31 tatttaattttatttaaata 50


 Score = 30.2 bits (15), Expect = 3.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                         
Query: 64 aattttatttaaata 78
          |||||||||||||||
Sbjct: 55 aattttatttaaata 41


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,602
Number of Sequences: 6905
Number of extensions: 15602
Number of successful extensions: 2091
Number of sequences better than 10.0: 263
length of query: 841
length of database: 5,674,871
effective HSP length: 16
effective length of query: 825
effective length of database: 5,564,391
effective search space: 4590622575
effective search space used: 4590622575
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 4
Homology vs DNA 
Query= Contig-U12809-1 (Contig-U12809-1Q) /CSM_Contig/Contig-U12809-1Q.Seq.d
         (841 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ370263) Dictyostelium discoideum cDNA clone:ddc53b17, 5' ...   424   0.0    3
(BJ404945) Dictyostelium discoideum cDNA clone:dds30j03, 3' ...   424   e-172  4
(BJ333880) Dictyostelium discoideum cDNA clone:dda44j09, 5' ...   424   e-170  3
(BJ393486) Dictyostelium discoideum cDNA clone:dds31a17, 5' ...   424   e-170  3
(BJ337919) Dictyostelium discoideum cDNA clone:dda59n09, 5' ...   424   e-170  3
(BJ367299) Dictyostelium discoideum cDNA clone:ddc42n01, 5' ...   424   e-142  3
(BJ423853) Dictyostelium discoideum cDNA clone:ddv50j13, 5' ...   418   e-137  2
(AU061872) Dictyostelium discoideum slug cDNA, clone SLG416.      125   3e-49  2
(EJ139808) 1092343641272 Global-Ocean-Sampling_GS-27-01-01-1...    54   0.009  1
(AC178462) Strongylocentrotus purpuratus clone R3-3039P05, W...    40   0.084  2
(AC178082) Strongylocentrotus purpuratus clone R3-3060A11, W...    40   0.084  2
(AC210478) Oryza glaberrima clone OG_BBa0062J24, *** SEQUENC...    50   0.14   1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.54   1
(AP005184) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.54   1
(EA687614) Sequence 66493 from patent US 7365185.                  48   0.54   1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    48   0.54   1
(AP003821) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.54   1
(AC224533) Bos taurus clone CH240-482O4, WORKING DRAFT SEQUE...    48   0.54   1
(AC182535) Sorex araneus clone SA_Ba-218O23, WORKING DRAFT S...    48   0.54   1
(ET082193) QM0AAC3BB09RM1 CCH3 Citrus clementina genomic clo...    48   0.54   1
(EI968187) SB_BBc70-M19.F SB_BBc Sorghum bicolor genomic 5',...    48   0.54   1
(DU072556) 69883 Tomato HindIII BAC Library Solanum lycopers...    48   0.54   1
(CW086280) 104_430_10946876_116_33020_080 Sorghum methylatio...    48   0.54   1
(CW086279) 104_430_10946876_114_33017_080 Sorghum methylatio...    48   0.54   1
(AG898603) Oryza sativa Indica Group genomic DNA, BAC end se...    48   0.54   1
(AG024014) Oryza sativa Japonica Group DNA, clone:ND3008_0_7...    48   0.54   1
(AC105208) Homo sapiens chromosome 17, clone CTD-3226O14, co...    36   1.2    2
(ET832229) CHO_OF808xb23f1.ab1 CHO_OF Nicotiana tabacum geno...    40   1.3    2
(AL390876) Human DNA sequence from clone RP11-394D2 on chrom...    46   2.1    1
(AC160705) Bos taurus clone CH240-92B22, WORKING DRAFT SEQUE...    46   2.1    1
(AC219733) Bos taurus clone CH240-324L14, WORKING DRAFT SEQU...    46   2.1    1
(AC218480) Bos taurus clone CH240-314M21, WORKING DRAFT SEQU...    46   2.1    1
(AC175256) Bos taurus clone CH240-3M10, WORKING DRAFT SEQUEN...    46   2.1    1
(AM613910) Entamoeba invadens IP1 GSS, clone inv043f11.p1k.        46   2.1    1
(AM612510) Entamoeba invadens IP1 GSS, clone inv026c10.q1k.        46   2.1    1
(EJ363383) 1092963696382 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.1    1
(CL004749) ZMMBBb0552O23f ZMMBBb (HindIII) Zea mays subsp. m...    46   2.1    1
(BZ395760) EINAM76TR EI_10_12_KB Entamoeba invadens genomic ...    46   2.1    1
(BZ393294) EINDB05TF EI_10_12_KB Entamoeba invadens genomic ...    46   2.1    1
(AG069496) Pan troglodytes DNA, clone: PTB-060B16.R.               46   2.1    1
(DY977541) CLSS11317.b1_J21.ab1 CLS(LMS) lettuce sativa Lact...    46   2.1    1
(DB746073) Apis mellifera head cDNA, RIKEN full-length enric...    46   2.1    1
(AC130686) Homo sapiens chromosome 17, clone RP13-415G19, co...    34   4.0    2
(AC131309) Homo sapiens chromosome 17 clone RP11-1063O21 map...    34   4.0    2
(AC180784) Strongylocentrotus purpuratus clone R3-3023M10, W...    34   4.0    2
(CU633205) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.1    2
(AC127524) Homo sapiens chromosome 17 clone RP13-557D11 map ...    34   4.1    2
(AC176382) Strongylocentrotus purpuratus clone R3-3045D20, W...    34   4.1    2
(AC180375) Strongylocentrotus purpuratus clone R3-3112J11, W...    34   4.1    2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    32   4.2    2
(AC209105) Populus trichocarpa clone POP086-P02, complete se...    34   4.2    2
(EL400608) CFFS11916.b1_G03.ab1 CFF(LMS) safflower Carthamus...    42   4.3    2
(AC216692) Homo sapiens chromosome 17 clone ABC12-46333900B2...    34   4.5    2
(EL511043) CFFZ658.b1_C22.ab1 CFF(XYZ) safflower Carthamus t...    42   4.9    2
(EL373628) CFFM10859.b1_F03.ab1 CFF(LMS) safflower Carthamus...    42   5.3    2
(DB994674) Bruguiera gymnorhiza mRNA, clone: Bg05-08_O19, 5'...    34   5.4    2
(AM664150) Entamoeba moshkovskii FIC GSS, clone mosh045a10.p1k.    32   5.5    2
(DE935599) Macropus eugenii DNA, BAC clone: MEB1-128B22_R, 3...    34   5.5    2
(EJ959569) 1093018995206 Global-Ocean-Sampling_GS-30-02-01-1...    34   5.6    2
(BP951941) Bruguiera gymnorhiza mRNA, clone: Bg05-20_B02, 5'...    34   5.6    2
(AL263436) Tetraodon nigroviridis genome survey sequence PUC...    34   5.7    2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    38   5.8    5
(CK422082) AUF_IpSpn_63_f10 Spleen cDNA library Ictalurus pu...    42   6.4    2
(CR848022) Zebrafish DNA sequence from clone DKEY-207B20 in ...    44   8.4    1
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    44   8.4    1
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    44   8.4    1
(AC167333) Mus musculus BAC clone RP23-92L4 from chromosome ...    44   8.4    1
(AC192338) Pan troglodytes BAC clone CH251-600K15 from chrom...    44   8.4    1
(AC191688) Pan troglodytes BAC clone CH251-670G16 from chrom...    44   8.4    1
(AC182656) Populus trichocarpa clone Pop1-122F12, complete s...    44   8.4    1
(AL138926) Human DNA sequence from clone RP11-173E24 on chro...    44   8.4    1
(AC012083) Homo sapiens 12 BAC RP11-864A19 (Roswell Park Can...    44   8.4    1
(AC134960) Bos taurus clone RP42-246J24, WORKING DRAFT SEQUE...    44   8.4    1
(AL360016) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.4    1
(AC230448) Bos taurus clone CH240-508L23, WORKING DRAFT SEQU...    44   8.4    1
(AC222395) Bos taurus clone CH240-417E11, WORKING DRAFT SEQU...    44   8.4    1
(AC180665) Strongylocentrotus purpuratus clone R3-3089J14, W...    44   8.4    1
(AC167216) Bos taurus clone CH240-139A20, *** SEQUENCING IN ...    44   8.4    1
(AC165803) Bos taurus clone CH240-158C24, WORKING DRAFT SEQU...    44   8.4    1
(AC013677) Homo sapiens clone RP11-20K17, WORKING DRAFT SEQU...    44   8.4    1
(AZ055931) RPCI-23-413L8.TV RPCI-23 Mus musculus genomic clo...    44   8.4    1
(ET737329) CHO_OF195xp10f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.4    1
(ER866662) PPTAN82TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.4    1
(ER821255) PPTIE06TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.4    1
(ER815836) PPTBO18TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.4    1
(EK555255) 1095516158429 Global-Ocean-Sampling_GS-32-01-01-1...    44   8.4    1
(EK542021) 1095516063625 Global-Ocean-Sampling_GS-32-01-01-1...    44   8.4    1
(EK388350) 1095469491742 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK279137) 1095462288903 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK266136) 1095462225927 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(AQ058422) CIT-HSP-2339J14.TR CIT-HSP Homo sapiens genomic c...    44   8.4    1
(EJ776032) 1093000601125 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ768875) 1092963357169 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ324085) 1095403543102 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.4    1
(DU363857) 1098313052395 CHORI-243 Ovis aries genomic clone ...    44   8.4    1
(DU275782) 1098448035744 CHORI-243 Ovis aries genomic clone ...    44   8.4    1
(DE241979) Trifolium pratense DNA, clone:RCG46987.                 44   8.4    1
(DE241879) Trifolium pratense DNA, clone:RCG46841.                 44   8.4    1
(DE238108) Trifolium pratense DNA, clone:RCG34534.                 44   8.4    1
(DE237539) Trifolium pratense DNA, clone:RCG33461.                 44   8.4    1

>(BJ370263) Dictyostelium discoideum cDNA clone:ddc53b17, 5' end,
           single read.
          Length = 699

 Score =  424 bits (214), Expect(3) = 0.0
 Identities = 214/214 (100%)
 Strand = Plus / Plus


Query: 357 gaagaaaataaaccaccagatttaaatcaaagtagtaatagtgatagtgatagtgaagaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaagaaaataaaccaccagatttaaatcaaagtagtaatagtgatagtgatagtgaagaa 274


Query: 417 ttagaaacaacattacaaccaccaacaccaccgccaccttattcagaagttgaaaataat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttagaaacaacattacaaccaccaacaccaccgccaccttattcagaagttgaaaataat 334


Query: 477 atagaaccaccaccattacaaattagttcaagtgaaactgactcgccaacacattcatta 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atagaaccaccaccattacaaattagttcaagtgaaactgactcgccaacacattcatta 394


Query: 537 gatagtagtgacaataatagtattgttggttctg 570
           ||||||||||||||||||||||||||||||||||
Sbjct: 395 gatagtagtgacaataatagtattgttggttctg 428

 Score =  252 bits (127), Expect(3) = 0.0
 Identities = 127/127 (100%)
 Strand = Plus / Plus


Query: 715 cagagattgaaatgagtagttttagatcaaatcaaagtgttagtcttttacatgatagac 774
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cagagattgaaatgagtagttttagatcaaatcaaagtgttagtcttttacatgatagac 632


Query: 775 aaaataaaacatggctttcaacaattaagaatcaattgataccaacatcaggtgatgtta 834
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaaataaaacatggctttcaacaattaagaatcaattgataccaacatcaggtgatgtta 692


Query: 835 atgcagt 841
           |||||||
Sbjct: 693 atgcagt 699

 Score =  103 bits (52), Expect(3) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 267 gatagtgattctgaccacgccgatgaagacaaattagaagaacaggatattg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gatagtgattctgaccacgccgatgaagacaaattagaagaacaggatattg 176

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 551,368,123
Number of extensions: 33889031
Number of successful extensions: 2714458
Number of sequences better than 10.0: 119
Length of query: 841
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 817
Effective length of database: 97,308,875,965
Effective search space: 79501351663405
Effective search space used: 79501351663405
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12809-1 (Contig-U12809-1Q) /CSM_Contig/Contig-U12809-1Q.Seq.d
         (841 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928179_599(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    34   6.8

>CU928179_599(CU928179|pid:none) Zygosaccharomyces rouxii strain
           CBS732 chromosome G complete sequence.
          Length = 615

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 459 SEVENNIEPPPLQISSSETDSPTH---SLDSSDNNSIVGSDINNKSDKEEKSPT 611
           SE E++        SSS +DS +    S DSSD++S  GSD +  SD EE+  T
Sbjct: 82  SESEDSSSSSSSSSSSSSSDSSSDESSSSDSSDSDSDSGSDSSESSDNEEEKKT 135

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 562,276,267
Number of extensions: 6080503
Number of successful extensions: 17459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17324
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 153
Effective length of database: 640,137,871
Effective search space: 97941094263
Effective search space used: 97941094263
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.86  gvh: 0.56  alm: 0.60  top: 0.43  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: extracellular, including cell wall
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for Contig-U12809-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0