Contig-U12805-1 |
Contig ID |
Contig-U12805-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
4737 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
647858 |
End point |
652569 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
20 |
Number of EST |
35 |
Link to clone list |
U12805 |
List of clone(s) |
est1=AHI767F,1,633 est2=AHP162F,406,1009 est3=AHH709F,480,892 est4=AHA888F,490,1121 est5=AHC595F,668,1139 est6=AHA244F,750,1337 est7=AHJ741F,810,1431 est8=AFI225F,820,1449 est9=AHK711F,826,1453 est10=AHH193F,1066,1449 est11=AHN731F,1327,1958 est12=AFC663F,1803,2283 est13=AHQ836F,1980,2621 est14=AHO304F,1981,2575 est15=AHD881F,2001,2621 est16=AHA244Z,2448,3280 est17=AFC663Z,2508,3223 est18=AFI225Z,2512,3277 est19=AHC595Z,2514,3279 est20=AHI767Z,2576,3381 est21=AHA888Z,2597,3352 est22=AFK746F,2641,3189 est23=AFJ169F,2642,3257 est24=AHP162Z,2674,3277 est25=AHK711Z,2898,3634 est26=AFE747E,3468,4738 est27=AHO104Z,3891,4634 est28=AFJ169Z,3907,4625 est29=AHD881Z,3953,4720 est30=AFK746Z,3983,4720 est31=AHQ836Z,3983,4721 est32=AFI341Z,3989,4708 est33=AHJ741Z,3998,4708 est34=AHH193Z,4004,4729 est35=AHN731Z,4030,4734
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 4 |
Homology vs DNA |
Query= Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Contig-U12805-1Q.Seq.d (4737 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ352981) Dictyostelium discoideum cDNA clone:dda48f17, 3' ... 1322 0.0 1 (BJ339153) Dictyostelium discoideum cDNA clone:dda64h10, 5' ... 1273 0.0 1 (BJ337705) Dictyostelium discoideum cDNA clone:dda58n07, 5' ... 1253 0.0 1 (BJ335923) Dictyostelium discoideum cDNA clone:dda52f03, 5' ... 1245 0.0 1 (BJ330847) Dictyostelium discoideum cDNA clone:dda32p22, 5' ... 1237 0.0 1 (BJ332330) Dictyostelium discoideum cDNA clone:dda38b22, 5' ... 1231 0.0 1 (BJ349571) Dictyostelium discoideum cDNA clone:dda36m23, 3' ... 1229 0.0 2 (BJ348353) Dictyostelium discoideum cDNA clone:dda32p22, 3' ... 1221 0.0 2 (BJ347832) Dictyostelium discoideum cDNA clone:dda31g12, 3' ... 1221 0.0 2 (BJ343801) Dictyostelium discoideum cDNA clone:dda17a08, 3' ... 1221 0.0 2 (BJ326615) Dictyostelium discoideum cDNA clone:dda17a08, 5' ... 1215 0.0 1 (BJ335446) Dictyostelium discoideum cDNA clone:dda50b11, 5' ... 1199 0.0 1 (BJ327206) Dictyostelium discoideum cDNA clone:dda19i17, 5' ... 1191 0.0 1 (BJ337818) Dictyostelium discoideum cDNA clone:dda59h01, 5' ... 1179 0.0 1 (BJ330374) Dictyostelium discoideum cDNA clone:dda31g12, 5' ... 1166 0.0 1 (BJ341443) Dictyostelium discoideum cDNA clone:dda6m16, 3' e... 1138 0.0 3 (BJ356846) Dictyostelium discoideum cDNA clone:dda61k15, 3' ... 1128 0.0 1 (BJ329691) Dictyostelium discoideum cDNA clone:dda25o19, 5' ... 1104 0.0 1 (BJ327966) Dictyostelium discoideum cDNA clone:dda22l11, 5' ... 1066 0.0 1 (BJ338467) Dictyostelium discoideum cDNA clone:dda61k15, 5' ... 1061 0.0 1 (BJ356049) Dictyostelium discoideum cDNA clone:dda59g01, 3' ... 864 0.0 5 (BJ353459) Dictyostelium discoideum cDNA clone:dda50b11, 3' ... 864 0.0 4 (BJ352162) Dictyostelium discoideum cDNA clone:dda45i23, 3' ... 864 0.0 4 (BJ350109) Dictyostelium discoideum cDNA clone:dda38b22, 3' ... 864 0.0 5 (BJ343807) Dictyostelium discoideum cDNA clone:dda17b11, 3' ... 864 0.0 4 (BJ343224) Dictyostelium discoideum cDNA clone:dda22l11, 3' ... 864 0.0 4 (BJ339801) Dictyostelium discoideum cDNA clone:dda10n11, 3' ... 864 0.0 4 (BJ355851) Dictyostelium discoideum cDNA clone:dda58n07, 3' ... 856 0.0 3 (BJ344519) Dictyostelium discoideum cDNA clone:dda19i17, 3' ... 831 0.0 5 (BJ357676) Dictyostelium discoideum cDNA clone:dda64h10, 3' ... 702 0.0 5 (BJ353963) Dictyostelium discoideum cDNA clone:dda52f03, 3' ... 684 0.0 5 (BJ323405) Dictyostelium discoideum cDNA clone:dda10n11, 5' ... 628 0.0 4 (BJ347045) Dictyostelium discoideum cDNA clone:dda25o19, 3' ... 480 0.0 5 (BJ324515) Dictyostelium discoideum cDNA clone:dda6m16, 5' e... 954 0.0 1 (BJ331749) Dictyostelium discoideum cDNA clone:dda36m23, 5' ... 908 0.0 1 (BJ335000) Dictyostelium discoideum cDNA clone:dda48f17, 5' ... 593 0.0 3 (BJ334343) Dictyostelium discoideum cDNA clone:dda46b03, 5' ... 805 0.0 1 (BJ334305) Dictyostelium discoideum cDNA clone:dda45i23, 5' ... 726 0.0 1 (AL844509) Plasmodium falciparum chromosome 13. 46 4e-15 22 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 2e-14 26 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 46 1e-13 23 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 2e-13 23 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 2e-11 21 (AE017308) Mycoplasma mobile 163K complete genome. 40 4e-11 25 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 1e-10 23 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 40 2e-10 21 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 9e-10 20 (CR548612) Paramecium tetraurelia macronuclear largest chrom... 42 9e-10 24 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 40 4e-09 22 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 5e-09 22 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 6e-09 23 (AF402141) Schizophyllum commune mitochondrial DNA, complete... 36 8e-09 20 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 44 2e-08 20 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 2e-08 24 (AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 44 3e-08 23 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 40 3e-08 22 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 42 4e-08 19 (AX392733) Sequence 23 from Patent WO0212526. 36 7e-08 20 (AR707080) Sequence 23 from patent US 6933145. 36 7e-08 20 (AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 1e-07 24 (AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 2e-07 21 (AL844507) Plasmodium falciparum chromosome 8. 38 2e-07 22 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 40 4e-07 21 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 4e-07 25 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 4e-07 22 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 38 5e-07 22 (AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 5e-07 25 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 5e-07 28 (AX392736) Sequence 26 from Patent WO0212526. 36 8e-07 17 (AR707083) Sequence 26 from patent US 6933145. 36 8e-07 17 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 1e-06 21 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 36 1e-06 26 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 40 2e-06 22 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2e-06 22 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 40 2e-06 23 (CP000361) Arcobacter butzleri RM4018, complete genome. 44 2e-06 23 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 34 2e-06 23 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 3e-06 19 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 40 3e-06 20 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 40 3e-06 17 (CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 38 3e-06 25 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 5e-06 22 (AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 38 5e-06 23 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 42 5e-06 21 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 7e-06 25 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 38 7e-06 21 (CP000048) Borrelia hermsii DAH, complete genome. 38 8e-06 27 (CP000745) Methanococcus maripaludis C7, complete genome. 38 1e-05 27 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 1e-05 23 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 1e-05 23 (AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 38 1e-05 22 (CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 34 1e-05 24 (AC122724) Medicago truncatula chromosome 6 clone mth2-14m14... 40 1e-05 20 (AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 1e-05 22 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 42 1e-05 18 (BX548174) Prochlorococcus marinus MED4 complete genome. 38 2e-05 25 (AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 2e-05 25 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 2e-05 18 (AE002130) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 34 2e-05 11 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 2e-05 19
>(BJ352981) Dictyostelium discoideum cDNA clone:dda48f17, 3' end, single read. Length = 797
Score = 1322 bits (667), Expect = 0.0 Identities = 667/667 (100%) Strand = Plus / Minus
Query: 2576 tgatgatgttgctcaaattagtgaatcaatacttgttgattactatcccagtagatgaat 2635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 797 tgatgatgttgctcaaattagtgaatcaatacttgttgattactatcccagtagatgaat 738
Query: 2636 caattaaattagatcaaagtattagagaaattttaccacatgtcagaattaaacaatcaa 2695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 caattaaattagatcaaagtattagagaaattttaccacatgtcagaattaaacaatcaa 678
Query: 2696 tagcttttgctaaaatattcattagtacttattcaggatttagatattattattcaaata 2755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 tagcttttgctaaaatattcattagtacttattcaggatttagatattattattcaaata 618
Query: 2756 ttatggcagatccagttgaaacaaatccaagattttatgaacaaattcaacttattaaag 2815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 ttatggcagatccagttgaaacaaatccaagattttatgaacaaattcaacttattaaag 558
Query: 2816 ataaaatattaaaagaatgtgatgaatcatccattcaattaaatggtgagaaaaagattt 2875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 ataaaatattaaaagaatgtgatgaatcatccattcaattaaatggtgagaaaaagattt 498
Query: 2876 caaaggttgaattgaacaaaattaaaattattaaaattaattcatggattgaatatttaa 2935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 caaaggttgaattgaacaaaattaaaattattaaaattaattcatggattgaatatttaa 438
Query: 2936 cccaagttatacaaattatttgcagcactgattcaaagaaatatattagtcattcacaac 2995 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 cccaagttatacaaattatttgcagcactgattcaaagaaatatattagtcattcacaac 378
Query: 2996 cagatcatagattaattaaattatttgtaaaactatcattaaatgaaaaaccatcaccaa 3055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 cagatcatagattaattaaattatttgtaaaactatcattaaatgaaaaaccatcaccaa 318
Query: 3056 gtgataaatttaatattttcaaagaagttaaagaagaaactccatttaattatttcgcaa 3115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 gtgataaatttaatattttcaaagaagttaaagaagaaactccatttaattatttcgcaa 258
Query: 3116 tttttatgggtattttacaagatacattatcacatctttatattaaattagatagtaaag 3175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 tttttatgggtattttacaagatacattatcacatctttatattaaattagatagtaaag 198
Query: 3176 aaactacaaataataaaattgtggaattccaagaacttaccgaaaaggatttagagaata 3235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aaactacaaataataaaattgtggaattccaagaacttaccgaaaaggatttagagaata 138
Query: 3236 taattgt 3242 ||||||| Sbjct: 137 taattgt 131
Score = 54.0 bits (27), Expect(2) = 0.004 Identities = 27/27 (100%) Strand = Plus / Minus
Query: 3310 gatcaagtaaaaatagaagcagccgta 3336 ||||||||||||||||||||||||||| Sbjct: 65 gatcaagtaaaaatagaagcagccgta 39
Score = 30.2 bits (15), Expect(2) = 0.004 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 831 gataaaatattaaaa 845 ||||||||||||||| Sbjct: 558 gataaaatattaaaa 544
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 6,490,413,926 Number of extensions: 435820840 Number of successful extensions: 40285780 Number of sequences better than 10.0: 2435 Length of query: 4737 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 4712 Effective length of database: 97,216,030,006 Effective search space: 458081933388272 Effective search space used: 458081933388272 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
14 |
AF (FL, S) |
6 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |