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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U12795-1
Contig ID Contig-U12795-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12795-1 (Contig-U12795-1Q) /CSM_Contig/Contig-U12795-1Q.Seq.d
ATTTTATTTATTTTTATTTTTTTATATTTTTTTTCATAACACTTTTTCAT
TCATTTATTTTTTTTACAAAAATGCCAAGATTTAATATCCAACAATTAAA
CAATTATTCACATTTATTTAAAAGACAAGTTAGAGTATCAGATTTAAACT
ATAATTCACATTTAGACCATTCAAATATTTTAAAAATTGTTCATGATGCA
AGAGCTGAATATTTTAGAGAATTAGGATTTTCAGAGAAAAATTTATTACC
AAAATCAAATAAATTAGTACACGGTATAGTTGGAGATTTACAAGCACAGT
ATTTAAATGAAGGTGAGTTATTTGAAGAATTATTAATTGAAACTGATTTC
ATTGAAAGATCAAGATGTGGATTTAGAATAACACATAGAATTAAATCATT
GAAACCATTTGGCTCTTTGGATCAATTTAATAATAAAAATAATAATAATA
GTAATAGTAATAATAATAAACCTAATGGTATTAATTATAATAATAGTAAT
ATTGGTATAAATAAACCAATAGGAGAGAATAGTAATAAACAAAATGCAGC
TGGTACAACATTTAAAAATATAGCTTTGATTGAGGTCGGTANTGTGGCAA
NATCNACAATTGATCATCNACCNTTTNAANTACCNGATTCCTTCTTTAAA
ACTGTTGGTTTANAAAAATTTTCNAATTACNAAAANAAAACNTTAANAAA
TTCNTTATAAAAAATTGNAATAATAATAATAANGATAATAATAAAAAAAA
AAAAATTTTGGATTTAAATAAATATATTATTAAAATAAAACACTTTAAA
Gap no gap
Contig length 799
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4524046
End point 4524848
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U12795
List of clone(s) 

est1=VSF703E,-11,800
est2=AHO168F,1,585
est3=AHO366Z,204,730
Translated Amino Acid sequence 
FIYFYFFIFFFITLFHSFIFFTKMPRFNIQQLNNYSHLFKRQVRVSDLNYNSHLDHSNIL
KIVHDARAEYFRELGFSEKNLLPKSNKLVHGIVGDLQAQYLNEGELFEELLIETDFIERS
RCGFRITHRIKSLKPFGSLDQFNNKNNNNSNSNNNKPNGINYNNSNIGINKPIGENSNKQ
NAAGTTFKNIALIEVGXVAXSTIDHXPFXXPDSFFKTVGLXKFSNYXXKTLXNSL*kixi
iiixiiikkkkfwi*inillk*ntl
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfififlyffs*hffihlfflqkcqdlisnn*tiihiylkdkleyqi*tiihi*tiqif
*klfmmqelnilen*dfqrkiyyqnqin*ytv*leiykhsi*mkvsylkny*lklislkd
qdvdle*hielnh*nhlalwinliikiiiiviviiinlmvliiiivilv*inq*erivin
kmqlvqhlki*l*lrsvxwqxxqliixxxxyxipslkllvxknfxitkxkx*xixykklx
****x***kkknfgfk*iyy*nktl*


Frame B:
fylflffyiffhntfsfiyffyknaki*yptikqlftfi*kts*sirfkl*ftfrpfkyf
kncs*cks*if*ririfrekfitkik*istryswrftstvfk*r*vi*riin*n*fh*ki
kmwi*nnt*n*iietiwlfgsi***k**********t*wy*l****ywyk*tnrre***t
kcswyni*kysfd*grxcgxixn*sstxxxtxfll*ncwfxkifxlxkxnxxkfxiknxn
nnnxdnnkkkkildlnkyiikikhfk


Frame C:
FIYFYFFIFFFITLFHSFIFFTKMPRFNIQQLNNYSHLFKRQVRVSDLNYNSHLDHSNIL
KIVHDARAEYFRELGFSEKNLLPKSNKLVHGIVGDLQAQYLNEGELFEELLIETDFIERS
RCGFRITHRIKSLKPFGSLDQFNNKNNNNSNSNNNKPNGINYNNSNIGINKPIGENSNKQ
NAAGTTFKNIALIEVGXVAXSTIDHXPFXXPDSFFKTVGLXKFSNYXXKTLXNSL*kixi
iiixiiikkkkfwi*inillk*ntl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12795-1 (Contig-U12795-1Q)
/CSM_Contig/Contig-U12795-1Q.Seq.d
         (799 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12795-1 (Contig-U12795-1Q) /CSM_Contig/Conti...   718  0.0
Contig-U04886-1 (Contig-U04886-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11376-1 (Contig-U11376-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13931-1 (Contig-U13931-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U13606-1 (Contig-U13606-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U12760-1 (Contig-U12760-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U11920-1 (Contig-U11920-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U11048-1 (Contig-U11048-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U10952-1 (Contig-U10952-1Q) /CSM_Contig/Conti...    36  0.056

>Contig-U12795-1 (Contig-U12795-1Q) /CSM_Contig/Contig-U12795-1Q.Seq.d
          Length = 799

 Score =  718 bits (362), Expect = 0.0
 Identities = 362/362 (100%)
 Strand = Plus / Plus

                                                                       
Query: 66  acaaaaatgccaagatttaatatccaacaattaaacaattattcacatttatttaaaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  acaaaaatgccaagatttaatatccaacaattaaacaattattcacatttatttaaaaga 125

                                                                       
Query: 126 caagttagagtatcagatttaaactataattcacatttagaccattcaaatattttaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 caagttagagtatcagatttaaactataattcacatttagaccattcaaatattttaaaa 185

                                                                       
Query: 186 attgttcatgatgcaagagctgaatattttagagaattaggattttcagagaaaaattta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attgttcatgatgcaagagctgaatattttagagaattaggattttcagagaaaaattta 245

                                                                       
Query: 246 ttaccaaaatcaaataaattagtacacggtatagttggagatttacaagcacagtattta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttaccaaaatcaaataaattagtacacggtatagttggagatttacaagcacagtattta 305

                                                                       
Query: 306 aatgaaggtgagttatttgaagaattattaattgaaactgatttcattgaaagatcaaga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatgaaggtgagttatttgaagaattattaattgaaactgatttcattgaaagatcaaga 365

                                                                       
Query: 366 tgtggatttagaataacacatagaattaaatcattgaaaccatttggctctttggatcaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtggatttagaataacacatagaattaaatcattgaaaccatttggctctttggatcaa 425

             
Query: 426 tt 427
           ||
Sbjct: 426 tt 427


 Score =  264 bits (133), Expect = 1e-70
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                       
Query: 513 aaaccaataggagagaatagtaataaacaaaatgcagctggtacaacatttaaaaatata 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaaccaataggagagaatagtaataaacaaaatgcagctggtacaacatttaaaaatata 572

                                                                       
Query: 573 gctttgattgaggtcggtantgtggcaanatcnacaattgatcatcnaccntttnaanta 632
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gctttgattgaggtcggtantgtggcaanatcnacaattgatcatcnaccntttnaanta 632

                                                   
Query: 633 ccngattccttctttaaaactgttggtttanaaaaatttt 672
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ccngattccttctttaaaactgttggtttanaaaaatttt 672


 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 756 ttttggatttaaataaatatattattaaaataaaacactttaaa 799
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttttggatttaaataaatatattattaaaataaaacactttaaa 799


>Contig-U04886-1 (Contig-U04886-1Q) /CSM_Contig/Contig-U04886-1Q.Seq.d
          Length = 1077

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 764 ttaaataaatatattattaaa 784
           |||||||||||||||||||||
Sbjct: 821 ttaaataaatatattattaaa 841


>Contig-U11376-1 (Contig-U11376-1Q) /CSM_Contig/Contig-U11376-1Q.Seq.d
          Length = 2135

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 772 atatattattaaaataaaac 791
           ||||||||||||||||||||
Sbjct: 55  atatattattaaaataaaac 74


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,587
Number of Sequences: 6905
Number of extensions: 14587
Number of successful extensions: 1686
Number of sequences better than 10.0: 220
length of query: 799
length of database: 5,674,871
effective HSP length: 16
effective length of query: 783
effective length of database: 5,564,391
effective search space: 4356918153
effective search space used: 4356918153
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12795-1 (Contig-U12795-1Q) /CSM_Contig/Contig-U12795-1Q.Seq.d
         (799 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ337960) Dictyostelium discoideum cDNA clone:dda59g17, 5' ...   718   0.0    2
(AU265643) Dictyostelium discoideum vegetative cDNA clone:VS...   712   0.0    1
(BJ356186) Dictyostelium discoideum cDNA clone:dda59d17, 3' ...   305   e-101  2
(AU265644) Dictyostelium discoideum vegetative cDNA clone:VS...   192   2e-77  2
(BX088527) Zebrafish DNA sequence from clone DKEY-200F8 in l...    38   0.29   2
(EA684803) Sequence 63682 from patent US 7365185.                  44   0.45   3
(AX347099) Sequence 2170 from Patent WO0200928.                    36   0.87   3
(AC205920) Pongo abelii BAC clone CH276-469H2 from chromosom...    34   1.1    2
(AC196809) Rhesus Macaque  BAC CH250-221O18 () complete sequ...    34   1.1    2
(AC132329) Mus musculus BAC clone RP24-206F15 from chromosom...    46   2.0    1
(AC122826) Mus musculus BAC clone RP23-209L3 from chromosome...    46   2.0    1
(EK366084) 1095469398595 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.0    1
(DN312144) PL06012A1E08 cDNA from juvenile hermaphodites Sch...    46   2.0    1
(EJ434233) 1093015271381 Global-Ocean-Sampling_GS-28-01-01-1...    42   4.8    2
(CU179669) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.0    3
(AF310886) Dictyostelium discoideum RacA (racA) gene, comple...    42   5.2    2
(AC201582) Strongylocentrotus purpuratus clone R3-4014F15, W...    38   7.9    3
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.0    1
(AP005836) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP005745) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP005630) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP005508) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP005181) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP004360) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP004347) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP003853) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP003536) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AP003231) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AC145127) Oryza sativa Japonica Group chromosome 10 clone P...    44   8.0    1
(AC144742) Oryza sativa Japonica Group chromosome 5 clone OS...    44   8.0    1
(AC137930) Oryza sativa Japonica Group chromosome 3 clone OS...    44   8.0    1
(AC137697) Genomic sequence for Oryza sativa, Nipponbare str...    44   8.0    1
(AC135428) Oryza sativa Japonica Group chromosome 5 clone P0...    44   8.0    1
(AC135226) Oryza sativa chromosome 3 BAC OSJNBa0037J17 genom...    44   8.0    1
(AC134928) Oryza sativa Japonica Group chromosome 5 clone B1...    44   8.0    1
(AC098694) Oryza sativa Japonica Group chromosome 10 clone O...    44   8.0    1
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    44   8.0    1
(EA727936) Sequence 106815 from patent US 7365185.                 44   8.0    1
(EA723160) Sequence 102039 from patent US 7365185.                 44   8.0    1
(EA720157) Sequence 99036 from patent US 7365185.                  44   8.0    1
(EA712505) Sequence 91384 from patent US 7365185.                  44   8.0    1
(EA705195) Sequence 84074 from patent US 7365185.                  44   8.0    1
(EA694960) Sequence 73839 from patent US 7365185.                  44   8.0    1
(EA686981) Sequence 65860 from patent US 7365185.                  44   8.0    1
(EA651326) Sequence 30205 from patent US 7365185.                  44   8.0    1
(DD259514) Novel nucleic acids, and screening method using t...    44   8.0    1
(AM910992) Plasmodium knowlesi strain H chromosome 10, compl...    44   8.0    1
(EF064743) Homo sapiens chemokine (C-X-C motif) ligand 13 (B...    44   8.0    1
(CT868727) Human DNA sequence from clone XX-NCIH1770_5F19.         44   8.0    1
(CT867970) Human DNA sequence from clone XX-NCIH1770_10D19.        44   8.0    1
(AC106715) Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc...    44   8.0    1
(AC092674) Homo sapiens BAC clone RP11-625I7 from 4, complet...    44   8.0    1
(AC010880) Homo sapiens BAC clone RP11-282G6 from 2, complet...    44   8.0    1
(AC146339) Oryza sativa Japonica Group chromosome 5 clone P0...    44   8.0    1
(AC111688) Rattus norvegicus clone CH230-65M23, WORKING DRAF...    44   8.0    1
(AC104354) Homo sapiens chromosome 11 clone RP11-116B7 map 1...    44   8.0    1
(AC094196) Rattus norvegicus clone CH230-2H23, WORKING DRAFT...    44   8.0    1
(CU407233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.0    1
(AP004773) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.0    1
(AC226646) Tupaia belangeri clone CH275-401D23, WORKING DRAF...    44   8.0    1
(AC211613) Oryza glaberrima clone OG_BBa0088K02, *** SEQUENC...    44   8.0    1
(AC210919) Oryza glaberrima clone OG_BBa0062G07, *** SEQUENC...    44   8.0    1
(AC025799) Homo sapiens chromosome 15 clone RP11-695J20 map ...    44   8.0    1
(AC015679) Homo sapiens chromosome 2 clone RP11-94G3 map 2, ...    44   8.0    1
(AZ525358) 243PbB07 Pb MBN #21 Plasmodium berghei genomic 3'...    44   8.0    1
(AQ754904) HS_3194_B2_D06_T7C CIT Approved Human Genomic Spe...    44   8.0    1
(AQ597336) HS_5314_B1_F07_T7A RPCI-11 Human Male BAC Library...    44   8.0    1
(ER531362) 1093015758031 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.0    1
(ER391972) 1095333000347 Global-Ocean-Sampling_GS-34-01-01-1...    44   8.0    1
(EK300063) 1095462362222 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.0    1
(EK189752) 1095460014078 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.0    1
(EJ856098) 1093017941323 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.0    1
(EJ853431) 1093017903174 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.0    1
(AQ330356) nbxb0047C01f CUGI Rice BAC Library Oryza sativa J...    44   8.0    1
(AM661338) Entamoeba moshkovskii FIC GSS, clone mosh108h10.p1k.    44   8.0    1
(AM608114) Entamoeba invadens IP1 GSS, clone inv085h08.p1k.        44   8.0    1
(EJ477759) 1095403451821 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.0    1
(EJ177708) 1092344107115 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.0    1
(EI300786) GM_WBc0026O18.f GM_WBc Glycine max genomic clone ...    44   8.0    1
(EI237065) OR__Ba0034E07.r OR__Ba Oryza rufipogon genomic cl...    44   8.0    1
(EI233499) OR__Ba0029D18.f OR__Ba Oryza rufipogon genomic cl...    44   8.0    1
(ED771118) GM_WBb0146B17.r GM_WBb Glycine max genomic clone ...    44   8.0    1
(CL833013) OR_CBa0055P05.f OR_CBa Oryza rufipogon genomic cl...    44   8.0    1
(CL823924) OR_CBa0043L06.f OR_CBa Oryza rufipogon genomic cl...    44   8.0    1
(CL805014) OR_CBa0018D20.r OR_CBa Oryza rufipogon genomic cl...    44   8.0    1
(CL772998) OR_BBa0085N02.f OR_BBa Oryza nivara genomic clone...    44   8.0    1
(CL762937) OR_BBa0133E05.r OR_BBa Oryza nivara genomic clone...    44   8.0    1
(CC869064) NDL.104I8.SP6 Notre Dame Liverpool Aedes aegypti ...    44   8.0    1
(CC134717) NDL.66P5.T7 Notre Dame Liverpool Aedes aegypti ge...    44   8.0    1
(CN187962) UCRCS05_0005E19_f Washington Navel Orange Stored ...    44   8.0    1
(CN186686) UCRCS05_0003E16_f Washington Navel Orange Stored ...    44   8.0    1
(CN186684) UCRCS05_0003E15_f Washington Navel Orange Stored ...    44   8.0    1
(CN185617) UCRCS05_0001J21_f Washington Navel Orange Stored ...    44   8.0    1
(BI491608) df12c06.w1 Morton Fetal Cochlea Homo sapiens cDNA...    44   8.0    1

>(BJ337960) Dictyostelium discoideum cDNA clone:dda59g17, 5' end,
           single read.
          Length = 585

 Score =  718 bits (362), Expect(2) = 0.0
 Identities = 362/362 (100%)
 Strand = Plus / Plus


Query: 66  acaaaaatgccaagatttaatatccaacaattaaacaattattcacatttatttaaaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  acaaaaatgccaagatttaatatccaacaattaaacaattattcacatttatttaaaaga 125


Query: 126 caagttagagtatcagatttaaactataattcacatttagaccattcaaatattttaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 caagttagagtatcagatttaaactataattcacatttagaccattcaaatattttaaaa 185


Query: 186 attgttcatgatgcaagagctgaatattttagagaattaggattttcagagaaaaattta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attgttcatgatgcaagagctgaatattttagagaattaggattttcagagaaaaattta 245


Query: 246 ttaccaaaatcaaataaattagtacacggtatagttggagatttacaagcacagtattta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttaccaaaatcaaataaattagtacacggtatagttggagatttacaagcacagtattta 305


Query: 306 aatgaaggtgagttatttgaagaattattaattgaaactgatttcattgaaagatcaaga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatgaaggtgagttatttgaagaattattaattgaaactgatttcattgaaagatcaaga 365


Query: 366 tgtggatttagaataacacatagaattaaatcattgaaaccatttggctctttggatcaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtggatttagaataacacatagaattaaatcattgaaaccatttggctctttggatcaa 425


Query: 426 tt 427
           ||
Sbjct: 426 tt 427

 Score = 79.8 bits (40), Expect(2) = 0.0
 Identities = 40/40 (100%)
 Strand = Plus / Plus


Query: 546 gcagctggtacaacatttaaaaatatagctttgattgagg 585
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcagctggtacaacatttaaaaatatagctttgattgagg 585

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 653,376,400
Number of extensions: 43528651
Number of successful extensions: 3856840
Number of sequences better than 10.0: 109
Length of query: 799
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 775
Effective length of database: 97,308,875,965
Effective search space: 75414378872875
Effective search space used: 75414378872875
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12795-1 (Contig-U12795-1Q) /CSM_Contig/Contig-U12795-1Q.Seq.d
         (799 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001392_333(CP001392|pid:none) Diaphorobacter sp. TPSY, complet...    54   6e-06
CP000680_2086(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    45   0.003
CP000513_544(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ...    45   0.003
CU633749_2605(CU633749|pid:none) Cupriavidus taiwanensis str. LM...    44   0.008
CP000680_1263(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    42   0.023
CP000377_2368(CP000377|pid:none) Silicibacter sp. TM1040, comple...    42   0.023
CP001131_3234(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    41   0.039
AM181176_4797(AM181176|pid:none) Pseudomonas fluorescens SBW25 c...    41   0.051
FM992689_142(FM992689|pid:none) Candida dubliniensis CD36 chromo...    40   0.067
AE016825_2375(AE016825|pid:none) Chromobacterium violaceum ATCC ...    40   0.088
CP000947_129(CP000947|pid:none) Haemophilus somnus 2336, complet...    40   0.088
CP000075_1410(CP000075|pid:none) Pseudomonas syringae pv. syring...    40   0.088
AE016853_3882(AE016853|pid:none) Pseudomonas syringae pv. tomato...    39   0.15
CP000058_3599(CP000058|pid:none) Pseudomonas syringae pv. phaseo...    39   0.15
CP000304_2347(CP000304|pid:none) Pseudomonas stutzeri A1501, com...    39   0.15
CP001091_303(CP001091|pid:none) Actinobacillus pleuropneumoniae ...    39   0.15
CP000264_969(CP000264|pid:none) Jannaschia sp. CCS1, complete ge...    39   0.19
CP001080_1433(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...    39   0.25
CP000687_299(CP000687|pid:none) Actinobacillus pleuropneumoniae ...    37   0.57
CP001055_1424(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    37   0.57
AP007255_3215(AP007255|pid:none) Magnetospirillum magneticum AMB...    37   0.57
CP000569_295(CP000569|pid:none) Actinobacillus pleuropneumoniae ...    37   0.97
AE004091_970(AE004091|pid:none) Pseudomonas aeruginosa PAO1, com...    36   1.3
CP000271_928(CP000271|pid:none) Burkholderia xenovorans LB400 ch...    36   1.3
CP001638_1472(CP001638|pid:none) Geobacillus sp. WCH70, complete...    35   2.8
CP001154_1448(CP001154|pid:none) Laribacter hongkongensis HLHK9,...    35   2.8
CP000514_3761(CP000514|pid:none) Marinobacter aquaeolei VT8, com...    35   2.8
CP000777_2154(CP000777|pid:none) Leptospira biflexa serovar Pato...    35   3.7
AE010301_103(AE010301|pid:none) Leptospira interrogans serovar L...    35   3.7
CP000252_1833(CP000252|pid:none) Syntrophus aciditrophicus SB, c...    34   6.3
CP000284_2339(CP000284|pid:none) Methylobacillus flagellatus KT,...    34   6.3
B84036(B84036) hypothetical protein BH3090 [imported] - Bacillus...    33   8.2
AX529002_1(AX529002|pid:none) Sequence 24 from Patent WO02064764.      33   8.2

>CP001392_333(CP001392|pid:none) Diaphorobacter sp. TPSY, complete
           genome.
          Length = 147

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 29/89 (32%), Positives = 50/89 (56%)
 Frame = +3

Query: 126 QVRVSDLNYNSHLDHSNILKIVHDARAEYFRELGFSEKNLLPKSNKLVHGIVGDLQAQYL 305
           Q+ +S +N   HLD++ +L +V +AR  +F+ LG+ E ++   S      +VGD+ AQY
Sbjct: 19  QIYISHVNQGGHLDNAQLLSLVSEARVRFFKSLGYPEADVAGLST-----VVGDIVAQYK 73

Query: 306 NEGELFEELLIETDFIERSRCGFRITHRI 392
           +E    E L +E    + +R GF +  R+
Sbjct: 74  SEAFHGETLRVEMTPQDFNRYGFDLVFRL 102

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 700,172,436
Number of extensions: 9648245
Number of successful extensions: 19080
Number of sequences better than 10.0: 33
Number of HSP's gapped: 19067
Number of HSP's successfully gapped: 33
Length of query: 266
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 140
Effective length of database: 643,374,430
Effective search space: 90072420200
Effective search space used: 90072420200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 1.02  gvh: 0.39  alm: 0.26  top: 0.63  tms: 0.07  mit: 0.42  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12795-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0