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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12793-1
Contig ID Contig-U12793-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12793-1 (Contig-U12793-1Q) /CSM_Contig/Contig-U12793-1Q.Seq.d
AAAGAAATAAACAAAAAAAAAGAAATAGAAAAAAAAAAATGTCAACAACA
CCAATTAATAATAAAGGTAAAAATTATGGAGGTGGATATAATAAACAATA
TTTAATATTGTTATTAGCAGATGGTATATTAGCATTTGTAAATTGGAGTT
TAATGGTAGAATTTATATCAGTTATTTGGTTTTTCCCAATGGGATTTATG
GGGTTCACAGGTTGGGAGGCAGCATTATTAGCAATTTTTACACCAATATT
TTTAGGTATTGGATTTATCAATAGAATAGTATCACGTTTCAATTTACCAA
TCCGTTTGGTAGCACAATTATTAGCATTCTTTGCAATTTTCCCATGGGCC
ATTGACAAGGCATCGATCAAGAATGACGAATTTGGAATTTTCTCATCACC
ACATGTCACCAAAACCTTTTTCGTATCGGTTGCAGTTGCTCTCGATTGGT
TAGCTCAATGCAATAGTTTTGCCAATGTAAAATCAGCAGTACGTCGTGAA
CGTGGTGCCTACGCCTATGCATTAGCAATTGTTTTACATGCAATCATTCG
TTTGCCATACCTCTCCATCAACCCATTCATGACTTGGAGCAATTGGATAG
TGTTTGGTATGATTTTAGTATTGGTCGCATTTGTGATTTTAATGGGTGAG
AACATCAATGCCTCTGACGAGAAGAAGAGTGGTGCCATTTGGTCTATCGA
GCATGAAACCTCCTCAAGCTCAACCATCGCCACTGGTGTCTCATTTGGTG
GCATCATTTTCTTTAACCAATTACTTTTCTCAACTTATGGTTTAATTCCA
CGTTGGGTCGGTCTCAATCCTTTCCCATATGGTCTTTTCGTTATCTTGGG
TATGATGGCTGGTGTAGTGATCTCAAAGAAGAAACATCTCGTTACCTCTA
GAAACTTTTTCATCTTTGCTCTCATTTTATCCGCTATCTTTGGTTGGTGC
TCTGGTACCGTTCCTTTCATCGTTGGTTTCATTGGTTTAATCTCTGCTTC
TCTCTTGGGTGCTTATTGTAATTCACTTTGGATCGTTTTAATTGAAAAAG
TTTCAAATACTGAAAAATTAGGTCAATTATTCACTTCTGCTATGTTAACT
TATACTGTTTTATTATTTTGGGCAATTTATGTTGTTTCATATAAATTTGT
ACCATGGTGGTTAGGATCAACATTATTAAGAGAACGTAATCAAACATTAA
TTATAGCATGTGTTTTAGCAACGGGTATTGCATTGTATANAATCATTAAG
ATCATCAGGGGATCTTCCTCATCA
Gap no gap
Contig length 1274
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5252517
End point 5251238
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 4
Link to clone list U12793
List of clone(s) 

est1=VHF305F,1,114
est2=AHO117F,22,663
est3=VHJ282F,113,672
est4=VFA220Z,517,1275
Translated Amino Acid sequence 
RNKQKKRNRKKKMSTTPINNKGKNYGGGYNKQYLILLLADGILAFVNWSLMVEFISVIWF
FPMGFMGFTGWEAALLAIFTPIFLGIGFINRIVSRFNLPIRLVAQLLAFFAIFPWAIDKA
SIKNDEFGIFSSPHVTKTFFVSVAVALDWLAQCNSFANVKSAVRRERGAYAYALAIVLHA
IIRLPYLSINPFMTWSNWIVFGMILVLVAFVILMGENINASDEKKSGAIWSIEHETSSSS
TIATGVSFGGIIFFNQLLFSTYGLIPRWVGLNPFPYGLFVILGMMAGVVISKKKHLVTSR
NFFIFALILSAIFGWCSGTVPFIVGFIGLISASLLGAYCNSLWIVLIEKVSNTEKLGQLF
TSAMLTYTVLLFWAIYVVSYKFVPWWLGSTLLRERNQTLIIACVLATGIALYXIIKIIRG
SSSS
Translated Amino Acid sequence (All Frames) 
Frame A:
keinkkkeiekkkcqqhqliikvkimevdiinni*ycy*qmvy*hl*igv*w*nlyqlfg
fsqwdlwgsqvgrqhy*qflhqyf*vldlsie*yhvsiyqsvw*hny*hslqfshgpltr
hrsrmtnlefshhhmspkpfsyrlqllsig*lnaivlpm*nqqyvvnvvptpmh*qlfym
qsfvchtspsths*lgaig*clv*f*ywshl*f*wvrtsmpltrrrvvpfglssmkppqa
qpsplvshlvasfsltnyfsqlmv*fhvgsvsilshmvfslswv*wlv**sqrrnislpl
etfssllsfyplslvgalvpflsslvslv*slllswvlivihfgsf*lkkfqilkn*vny
slllc*lilfyyfgqfmlfhinlyhgg*dqhy*envikh*l*hvf*qrvlhcixslrssg
dlph


Frame B:
kk*tkkkk*kkknvnntn***r*klwrwi**tifnivisrwyisicklefngriyisylv
fpngiygvhrlggsiisnfytnifrywiyq*nsitfqftnpfgstiisilcnfpmgh*qg
idqe*riwnflittchqnlfrigcscsrlvssmq*fcqckissts*twclrlcisncftc
nhsfaiplhqpihdleqldsvwydfsigricdfng*ehqcl*reeewchlvyra*nllkl
nhrhwcliwwhhfl*pitflnlwfnstlgrsqsfpiwsfrylgydgwcsdlkeetsryl*
klfhlcshfirylwlvlwyrsfhrwfhwfnlcfslgcll*ftldrfn*ksfky*kirsii
hfcyvnlycfiilgnlccfi*ictmvvriniikrt*sninysmcfsngycivxnh*dhqg
ifli


Frame C:
RNKQKKRNRKKKMSTTPINNKGKNYGGGYNKQYLILLLADGILAFVNWSLMVEFISVIWF
FPMGFMGFTGWEAALLAIFTPIFLGIGFINRIVSRFNLPIRLVAQLLAFFAIFPWAIDKA
SIKNDEFGIFSSPHVTKTFFVSVAVALDWLAQCNSFANVKSAVRRERGAYAYALAIVLHA
IIRLPYLSINPFMTWSNWIVFGMILVLVAFVILMGENINASDEKKSGAIWSIEHETSSSS
TIATGVSFGGIIFFNQLLFSTYGLIPRWVGLNPFPYGLFVILGMMAGVVISKKKHLVTSR
NFFIFALILSAIFGWCSGTVPFIVGFIGLISASLLGAYCNSLWIVLIEKVSNTEKLGQLF
TSAMLTYTVLLFWAIYVVSYKFVPWWLGSTLLRERNQTLIIACVLATGIALYXIIKIIRG
SSSS
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12793-1 (Contig-U12793-1Q)
/CSM_Contig/Contig-U12793-1Q.Seq.d
         (1274 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12793-1 (Contig-U12793-1Q) /CSM_Contig/Conti...  2442  0.0
Contig-U01253-1 (Contig-U01253-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14155-1 (Contig-U14155-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U05966-1 (Contig-U05966-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11140-1 (Contig-U11140-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U01932-1 (Contig-U01932-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U14343-1 (Contig-U14343-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U13609-1 (Contig-U13609-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U12421-1 (Contig-U12421-1Q) /CSM_Contig/Conti...    34  0.36

>Contig-U12793-1 (Contig-U12793-1Q) /CSM_Contig/Contig-U12793-1Q.Seq.d
          Length = 1274

 Score = 2442 bits (1232), Expect = 0.0
 Identities = 1235/1235 (100%)
 Strand = Plus / Plus

                                                                        
Query: 40   tgtcaacaacaccaattaataataaaggtaaaaattatggaggtggatataataaacaat 99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40   tgtcaacaacaccaattaataataaaggtaaaaattatggaggtggatataataaacaat 99

                                                                        
Query: 100  atttaatattgttattagcagatggtatattagcatttgtaaattggagtttaatggtag 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100  atttaatattgttattagcagatggtatattagcatttgtaaattggagtttaatggtag 159

                                                                        
Query: 160  aatttatatcagttatttggtttttcccaatgggatttatggggttcacaggttgggagg 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160  aatttatatcagttatttggtttttcccaatgggatttatggggttcacaggttgggagg 219

                                                                        
Query: 220  cagcattattagcaatttttacaccaatatttttaggtattggatttatcaatagaatag 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220  cagcattattagcaatttttacaccaatatttttaggtattggatttatcaatagaatag 279

                                                                        
Query: 280  tatcacgtttcaatttaccaatccgtttggtagcacaattattagcattctttgcaattt 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280  tatcacgtttcaatttaccaatccgtttggtagcacaattattagcattctttgcaattt 339

                                                                        
Query: 340  tcccatgggccattgacaaggcatcgatcaagaatgacgaatttggaattttctcatcac 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340  tcccatgggccattgacaaggcatcgatcaagaatgacgaatttggaattttctcatcac 399

                                                                        
Query: 400  cacatgtcaccaaaacctttttcgtatcggttgcagttgctctcgattggttagctcaat 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400  cacatgtcaccaaaacctttttcgtatcggttgcagttgctctcgattggttagctcaat 459

                                                                        
Query: 460  gcaatagttttgccaatgtaaaatcagcagtacgtcgtgaacgtggtgcctacgcctatg 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  gcaatagttttgccaatgtaaaatcagcagtacgtcgtgaacgtggtgcctacgcctatg 519

                                                                        
Query: 520  cattagcaattgttttacatgcaatcattcgtttgccatacctctccatcaacccattca 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  cattagcaattgttttacatgcaatcattcgtttgccatacctctccatcaacccattca 579

                                                                        
Query: 580  tgacttggagcaattggatagtgtttggtatgattttagtattggtcgcatttgtgattt 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  tgacttggagcaattggatagtgtttggtatgattttagtattggtcgcatttgtgattt 639

                                                                        
Query: 640  taatgggtgagaacatcaatgcctctgacgagaagaagagtggtgccatttggtctatcg 699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  taatgggtgagaacatcaatgcctctgacgagaagaagagtggtgccatttggtctatcg 699

                                                                        
Query: 700  agcatgaaacctcctcaagctcaaccatcgccactggtgtctcatttggtggcatcattt 759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  agcatgaaacctcctcaagctcaaccatcgccactggtgtctcatttggtggcatcattt 759

                                                                        
Query: 760  tctttaaccaattacttttctcaacttatggtttaattccacgttgggtcggtctcaatc 819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  tctttaaccaattacttttctcaacttatggtttaattccacgttgggtcggtctcaatc 819

                                                                        
Query: 820  ctttcccatatggtcttttcgttatcttgggtatgatggctggtgtagtgatctcaaaga 879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  ctttcccatatggtcttttcgttatcttgggtatgatggctggtgtagtgatctcaaaga 879

                                                                        
Query: 880  agaaacatctcgttacctctagaaactttttcatctttgctctcattttatccgctatct 939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  agaaacatctcgttacctctagaaactttttcatctttgctctcattttatccgctatct 939

                                                                        
Query: 940  ttggttggtgctctggtaccgttcctttcatcgttggtttcattggtttaatctctgctt 999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  ttggttggtgctctggtaccgttcctttcatcgttggtttcattggtttaatctctgctt 999

                                                                        
Query: 1000 ctctcttgggtgcttattgtaattcactttggatcgttttaattgaaaaagtttcaaata 1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ctctcttgggtgcttattgtaattcactttggatcgttttaattgaaaaagtttcaaata 1059

                                                                        
Query: 1060 ctgaaaaattaggtcaattattcacttctgctatgttaacttatactgttttattatttt 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 ctgaaaaattaggtcaattattcacttctgctatgttaacttatactgttttattatttt 1119

                                                                        
Query: 1120 gggcaatttatgttgtttcatataaatttgtaccatggtggttaggatcaacattattaa 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 gggcaatttatgttgtttcatataaatttgtaccatggtggttaggatcaacattattaa 1179

                                                                        
Query: 1180 gagaacgtaatcaaacattaattatagcatgtgttttagcaacgggtattgcattgtata 1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 gagaacgtaatcaaacattaattatagcatgtgttttagcaacgggtattgcattgtata 1239

                                               
Query: 1240 naatcattaagatcatcaggggatcttcctcatca 1274
            |||||||||||||||||||||||||||||||||||
Sbjct: 1240 naatcattaagatcatcaggggatcttcctcatca 1274


>Contig-U01253-1 (Contig-U01253-1Q) /CSM_Contig/Contig-U01253-1Q.Seq.d
          Length = 1118

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1036 ttttaattgaaaaagtttcaaatactgaa 1064
            ||||||||| ||||||||||| |||||||
Sbjct: 727  ttttaattgtaaaagtttcaattactgaa 699


>Contig-U14155-1 (Contig-U14155-1Q) /CSM_Contig/Contig-U14155-1Q.Seq.d
          Length = 594

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 94  aacaatatttaatattgtt 112
           |||||||||||||||||||
Sbjct: 276 aacaatatttaatattgtt 294


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,532
Number of Sequences: 6905
Number of extensions: 14532
Number of successful extensions: 1345
Number of sequences better than 10.0: 136
length of query: 1274
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1258
effective length of database: 5,564,391
effective search space: 7000003878
effective search space used: 7000003878
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12793-1 (Contig-U12793-1Q) /CSM_Contig/Contig-U12793-1Q.Seq.d
         (1274 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  2187   0.0    1
(BJ428744) Dictyostelium discoideum cDNA clone:ddv1g06, 3' e...  1497   0.0    1
(BJ337790) Dictyostelium discoideum cDNA clone:dda59a05, 5' ...  1237   0.0    1
(BJ423597) Dictyostelium discoideum cDNA clone:ddv49c22, 5' ...  1110   0.0    1
(BJ421225) Dictyostelium discoideum cDNA clone:ddv41j01, 5' ...   125   4e-24  1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    54   0.013  1
(EK239810) 1095460217668 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.21   1
(AB217121) Equus caballus DNA, microsatellite TKY3178.             48   0.82   1
(AC159162) Carollia perspicillata clone 153D6, WORKING DRAFT...    48   0.82   1
(AC150231) Carollia perspicillata clone 275K6, WORKING DRAFT...    48   0.82   1
(AC135647) Rattus norvegicus clone CH230-177I4, WORKING DRAF...    48   0.82   1
(AC110399) Rattus norvegicus clone CH230-38C1, WORKING DRAFT...    48   0.82   1
(CR940348) Theileria annulata genomic DNA chromosome 2.            48   0.82   1
(AC189349) Brassica rapa subsp. pekinensis clone KBrB042O05,...    48   0.82   1
(EK247032) 1095460262862 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.82   1
(DH601677) Rattus norvegicus DNA, BAC clone: RNB1-127M19, 3'...    48   0.82   1
(CU467656) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.7    2
(BX545857) Campylobacter jejuni.                                   42   2.9    3
(CU856420) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU638720) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(AC179020) Strongylocentrotus purpuratus clone R3-32M14, WOR...    46   3.3    1
(AC176874) Strongylocentrotus purpuratus clone R3-1110D20, W...    46   3.3    1
(AC176744) Strongylocentrotus purpuratus clone R3-3097F16, W...    46   3.3    1
(ER432091) 1092963781753 Global-Ocean-Sampling_GS-35-01-01-1...    46   3.3    1
(EJ077700) 1095458136480 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.3    1
(EJ044952) 1095454114453 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.3    1
(EJ028182) 1095454032404 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.3    1
(AL149742) Anopheles gambiae GSS T7 end of clone 19H24 of No...    46   3.3    1
(CZ213814) AIAA-aae43i08.b1 Ancylostoma caninum whole genome...    46   3.3    1
(CT372753) Sus scrofa genomic clone CH242-304L10, genomic su...    46   3.3    1
(DT810089) LB01610.CR_L18 GC_BGC-16 Bos taurus cDNA clone IM...    46   3.3    1
(DN807921) 76969383 Sea Urchin primary mesenchyme cell cDNA ...    46   3.3    1
(AI812040) tw46d10.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone I...    46   3.3    1
(BP867589) Arabidopsis thaliana cDNA clone:RAFL21-81-J04, 5'...    46   3.3    1
(DQ366743) Uncultured Prochlorococcus marinus clone HOT0M-8F...    46   3.3    1
(AC102441) Mus musculus chromosome 18, clone RP24-160I12, co...    32   6.0    2
(AC124740) Mus musculus BAC clone RP23-356M1 from chromosome...    32   6.0    2
(AC005956) Arabidopsis thaliana chromosome 2 clone MHK10 map...    32   6.3    2
(AC114815) Homo sapiens BAC clone RP11-1369K4 from 4, comple...    42   6.4    2
(FH267443) CHO_OF4136xb18r1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   6.6    3
(DY910176) CHAX5142.b1_L13.ab1 CHA(XYZ) common wild sunflowe...    34   8.1    2
(AG402574) Mus musculus molossinus DNA, clone:MSMg01-237L05....    32   8.2    2
(AG327133) Mus musculus molossinus DNA, clone:MSMg01-115I08....    32   8.2    2
(AQ929104) RPCI-23-262I6.TJ RPCI-23 Mus musculus genomic clo...    32   8.4    2
(AZ236014) RPCI-23-83A15.TJ RPCI-23 Mus musculus genomic clo...    32   8.5    2
(AC207579) Homo sapiens FOSMID clone ABC12-49213100I4 from c...    34   9.0    5
(BG709843) pgl1n.pk001.j19 Normalized Liver Library Gallus g...    42   9.0    2
(DV968333) GC06328 Gracilaria changii cDNA library Gracilari...    38   9.5    3

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
             strain AX4, complete sequence.
          Length = 413138

 Score = 2187 bits (1103), Expect = 0.0
 Identities = 1103/1103 (100%)
 Strand = Plus / Plus


Query: 40    tgtcaacaacaccaattaataataaaggtaaaaattatggaggtggatataataaacaat 99
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68508 tgtcaacaacaccaattaataataaaggtaaaaattatggaggtggatataataaacaat 68567


Query: 100   atttaatattgttattagcagatggtatattagcatttgtaaattggagtttaatggtag 159
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68568 atttaatattgttattagcagatggtatattagcatttgtaaattggagtttaatggtag 68627


Query: 160   aatttatatcagttatttggtttttcccaatgggatttatggggttcacaggttgggagg 219
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68628 aatttatatcagttatttggtttttcccaatgggatttatggggttcacaggttgggagg 68687


Query: 220   cagcattattagcaatttttacaccaatatttttaggtattggatttatcaatagaatag 279
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68688 cagcattattagcaatttttacaccaatatttttaggtattggatttatcaatagaatag 68747


Query: 280   tatcacgtttcaatttaccaatccgtttggtagcacaattattagcattctttgcaattt 339
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68748 tatcacgtttcaatttaccaatccgtttggtagcacaattattagcattctttgcaattt 68807


Query: 340   tcccatgggccattgacaaggcatcgatcaagaatgacgaatttggaattttctcatcac 399
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68808 tcccatgggccattgacaaggcatcgatcaagaatgacgaatttggaattttctcatcac 68867


Query: 400   cacatgtcaccaaaacctttttcgtatcggttgcagttgctctcgattggttagctcaat 459
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68868 cacatgtcaccaaaacctttttcgtatcggttgcagttgctctcgattggttagctcaat 68927


Query: 460   gcaatagttttgccaatgtaaaatcagcagtacgtcgtgaacgtggtgcctacgcctatg 519
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68928 gcaatagttttgccaatgtaaaatcagcagtacgtcgtgaacgtggtgcctacgcctatg 68987


Query: 520   cattagcaattgttttacatgcaatcattcgtttgccatacctctccatcaacccattca 579
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68988 cattagcaattgttttacatgcaatcattcgtttgccatacctctccatcaacccattca 69047


Query: 580   tgacttggagcaattggatagtgtttggtatgattttagtattggtcgcatttgtgattt 639
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69048 tgacttggagcaattggatagtgtttggtatgattttagtattggtcgcatttgtgattt 69107


Query: 640   taatgggtgagaacatcaatgcctctgacgagaagaagagtggtgccatttggtctatcg 699
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69108 taatgggtgagaacatcaatgcctctgacgagaagaagagtggtgccatttggtctatcg 69167


Query: 700   agcatgaaacctcctcaagctcaaccatcgccactggtgtctcatttggtggcatcattt 759
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69168 agcatgaaacctcctcaagctcaaccatcgccactggtgtctcatttggtggcatcattt 69227


Query: 760   tctttaaccaattacttttctcaacttatggtttaattccacgttgggtcggtctcaatc 819
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69228 tctttaaccaattacttttctcaacttatggtttaattccacgttgggtcggtctcaatc 69287


Query: 820   ctttcccatatggtcttttcgttatcttgggtatgatggctggtgtagtgatctcaaaga 879
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69288 ctttcccatatggtcttttcgttatcttgggtatgatggctggtgtagtgatctcaaaga 69347


Query: 880   agaaacatctcgttacctctagaaactttttcatctttgctctcattttatccgctatct 939
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69348 agaaacatctcgttacctctagaaactttttcatctttgctctcattttatccgctatct 69407


Query: 940   ttggttggtgctctggtaccgttcctttcatcgttggtttcattggtttaatctctgctt 999
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69408 ttggttggtgctctggtaccgttcctttcatcgttggtttcattggtttaatctctgctt 69467


Query: 1000  ctctcttgggtgcttattgtaattcactttggatcgttttaattgaaaaagtttcaaata 1059
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69468 ctctcttgggtgcttattgtaattcactttggatcgttttaattgaaaaagtttcaaata 69527


Query: 1060  ctgaaaaattaggtcaattattcacttctgctatgttaacttatactgttttattatttt 1119
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69528 ctgaaaaattaggtcaattattcacttctgctatgttaacttatactgttttattatttt 69587


Query: 1120  gggcaatttatgttgtttcatat 1142
             |||||||||||||||||||||||
Sbjct: 69588 gggcaatttatgttgtttcatat 69610

 Score =  182 bits (92), Expect(3) = 3e-50
 Identities = 92/92 (100%)
 Strand = Plus / Plus


Query: 1143  aaatttgtaccatggtggttaggatcaacattattaagagaacgtaatcaaacattaatt 1202
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69704 aaatttgtaccatggtggttaggatcaacattattaagagaacgtaatcaaacattaatt 69763


Query: 1203  atagcatgtgttttagcaacgggtattgcatt 1234
             ||||||||||||||||||||||||||||||||
Sbjct: 69764 atagcatgtgttttagcaacgggtattgcatt 69795

 Score = 38.2 bits (19), Expect(3) = 3e-50
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 1241  aatcattaagatcatcagg 1259
             |||||||||||||||||||
Sbjct: 69804 aatcattaagatcatcagg 69822

 Score = 30.2 bits (15), Expect(3) = 3e-50
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 1260  ggatcttcctcatca 1274
             |||||||||||||||
Sbjct: 69824 ggatcttcctcatca 69838

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,386,613,944
Number of extensions: 80490804
Number of successful extensions: 6768390
Number of sequences better than 10.0: 48
Length of query: 1274
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1250
Effective length of database: 97,308,875,965
Effective search space: 121636094956250
Effective search space used: 121636094956250
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12793-1 (Contig-U12793-1Q) /CSM_Contig/Contig-U12793-1Q.Seq.d
         (1274 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_23(AC116305|pid:none) Dictyostelium discoideum chromoso...   710   0.0
CR382131_1390(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    90   2e-16
(Q91YL7) RecName: Full=PGAP2-interacting protein;  &AK081976_1(A...    84   1e-14
AK300495_1(AK300495|pid:none) Homo sapiens cDNA FLJ50220 complet...    77   1e-12
AK316307_1(AK316307|pid:none) Homo sapiens cDNA, FLJ79206 comple...    76   2e-12
AP007151_1087(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    73   3e-11
AL512496_12(AL512496|pid:none) S.pombe chromosome I cosmid c589.       68   6e-10
FN392319_424(FN392319|pid:none) Pichia pastoris GS115 chromosome...    66   2e-09
AK035550_1(AK035550|pid:none) Mus musculus adult male urinary bl...    63   2e-08
AM920427_1579(AM920427|pid:none) Penicillium chrysogenum Wiscons...    63   3e-08
FM992695_119(FM992695|pid:none) Candida dubliniensis CD36 chromo...    58   8e-07
CR382121_463(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    55   5e-06
(P25618) RecName: Full=Protein CWH43; AltName: Full=Calcofluor w...    55   5e-06
CP000502_273(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    54   9e-06
CU928180_569(CU928180|pid:none) Kluyveromyces thermotolerans str...    54   9e-06
S19427(S19427)probable membrane protein YCR017c - yeast (Sacchar...    54   9e-06
CR380958_339(CR380958|pid:none) Candida glabrata strain CBS138 c...    53   2e-05
AM989984_44(AM989984|pid:none) Zygosaccharomyces rouxii strain C...    48   7e-04
AP006618_5077(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...    37   1.2
AE016853_3811(AE016853|pid:none) Pseudomonas syringae pv. tomato...    37   1.5
AL939113_99(AL939113|pid:none) Streptomyces coelicolor A3(2) com...    37   1.5
CR533429_4(CR533429|pid:none) Zebrafish DNA sequence from clone ...    37   2.0
BC129404_1(BC129404|pid:none) Danio rerio novel protein similar ...    37   2.0
CP001096_1035(CP001096|pid:none) Rhodopseudomonas palustris TIE-...    36   2.6
CP000321_10(CP000321|pid:none) Nitrobacter hamburgensis X14 plas...    36   3.4
AE014186_227(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.4
CP000495_101(CP000495|pid:none) Bradyrhizobium sp. BTAi1, comple...    35   4.4
CP000851_2856(CP000851|pid:none) Shewanella pealeana ATCC 700345...    35   5.8
CP000075_1586(CP000075|pid:none) Pseudomonas syringae pv. syring...    35   5.8
BA000032_944(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221...    35   5.8
CP000058_1508(CP000058|pid:none) Pseudomonas syringae pv. phaseo...    35   7.6
AL157959_447(AL157959|pid:none) Neisseria meningitidis serogroup...    34   9.9
CP001614_1749(CP001614|pid:none) Teredinibacter turnerae T7901, ...    34   9.9
CP000381_239(CP000381|pid:none) Neisseria meningitidis 053442, c...    34   9.9
AE002098_1870(AE002098|pid:none) Neisseria meningitidis MC58, co...    34   9.9

>AC116305_23(AC116305|pid:none) Dictyostelium discoideum chromosome 2
            map 1005175-1418323 strain AX4, complete sequence.
          Length = 714

 Score =  710 bits (1832), Expect = 0.0
 Identities = 361/398 (90%), Positives = 361/398 (90%)
 Frame = +3

Query: 39   MSTTPIXXXXXXXXXXXXXQYLILLLADGILAFVNWSLMVEFISVIWFFPMGFMGFTGWE 218
            MSTTPI             QYLILLLADGILAFVNWSLMVEFISVIWFFPMGFMGFTGWE
Sbjct: 1    MSTTPINNKGKNYGGGYNKQYLILLLADGILAFVNWSLMVEFISVIWFFPMGFMGFTGWE 60

Query: 219  AALLAIFTPIFLGIGFINRIVSRFNLPIRLVAQLLAFFAIFPWAIDKASIKNDEFGIFSS 398
            AALLAIFTPIFLGIGFINRIVSRFNLPIRLVAQLLAFFAIFPWAIDKASIKNDEFGIFSS
Sbjct: 61   AALLAIFTPIFLGIGFINRIVSRFNLPIRLVAQLLAFFAIFPWAIDKASIKNDEFGIFSS 120

Query: 399  PHVTKTFFVSVAVALDWLAQCNSFANVKSAVRRERGAYAYALAIVLHAIIRLPYLSINPF 578
            PHVTKTFFVSVAVALDWLAQCNSFANVKSAVRRERGAYAYALAIVLHAIIRLPYLSINPF
Sbjct: 121  PHVTKTFFVSVAVALDWLAQCNSFANVKSAVRRERGAYAYALAIVLHAIIRLPYLSINPF 180

Query: 579  MTWSNWIVFGMILVLVAFVILMGENINASDEKKSGAIWXXXXXXXXXXXXATGVSFGGII 758
            MTWSNWIVFGMILVLVAFVILMGENINASDEKKSGAIW            ATGVSFGGII
Sbjct: 181  MTWSNWIVFGMILVLVAFVILMGENINASDEKKSGAIWSIEHETSSSSTIATGVSFGGII 240

Query: 759  FFNQLLFSTYGLIPRWVGLNPFPYGLFVILGMMAGVVISKKKHLVTSRNXXXXXXXXXXX 938
            FFNQLLFSTYGLIPRWVGLNPFPYGLFVILGMMAGVVISKKKHLVTSRN
Sbjct: 241  FFNQLLFSTYGLIPRWVGLNPFPYGLFVILGMMAGVVISKKKHLVTSRNFFIFALILSAI 300

Query: 939  XGWCSGTVPFIVGFIGLISASLLGAYCNSLWIVLIEKVSNTEKLGQLFTSAMLTYTVLLF 1118
             GWCSGTVPFIVGFIGLISASLLGAYCNSLWIVLIEKVSNTEKLGQLFTSAMLTYTVLLF
Sbjct: 301  FGWCSGTVPFIVGFIGLISASLLGAYCNSLWIVLIEKVSNTEKLGQLFTSAMLTYTVLLF 360

Query: 1119 WAIYVVSYKFVPWWLGSTLLRERNQTLIIACVLATGIA 1232
            WAIYVVSYKFVPWWLGSTLLRERNQTLIIACVLATGIA
Sbjct: 361  WAIYVVSYKFVPWWLGSTLLRERNQTLIIACVLATGIA 398

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,136,062,081
Number of extensions: 45845050
Number of successful extensions: 179870
Number of sequences better than 10.0: 35
Number of HSP's gapped: 179793
Number of HSP's successfully gapped: 37
Length of query: 424
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 293
Effective length of database: 627,191,635
Effective search space: 183767149055
Effective search space used: 183767149055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: 0.68  alm: 0.12  top: 0.47  tms: 0.67  mit: 0.35  mip: 0.17
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 56.0 %: plasma membrane
	 32.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for Contig-U12793-1 is pla
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 1
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0