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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12785-1
Contig ID Contig-U12785-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Contig-U12785-1Q.Seq.d
ATTTGATCCATTTTTCTTTTTCATACTCGCTCGCTCAACACACAAATTGT
TGGAAAACAACATTTATTTAATCTATTTTTAAAAATATATATATTTGTGT
TTGAGGTGTGTGTGTATATTATACATTTTATTTACATCAAATATTGTAAA
TAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAAAAAAA
AAAATGTATAGAATTGGTTCATCAATTAAAAAATCGAATCAAATTCGATT
AGCAACAATAAGAACAACAACAAATGTTGTTATTAGAAATTATTGTTCAG
AGACATCATCAACTCAACCACCACCACCAGAACAAGGACAAGAAACACCA
AAACCAATAATTAAAAAAAAGAAACAATCAAGAGAGATCTTTTCAGAATT
TGTAGATGATGGTGATGTTGTTGTTGATCATAGAAAACATTCACAAAAGA
AAGCAGTTGTCGATCAAAGAACTCAAGATTTCGATAAAATGCTCGCAAGT
CTCACAATGAAAGATTTAAAGTTAAT
Gap no gap
Contig length 526
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2170643
End point 2171171
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 7
Link to clone list U12785
List of clone(s) 

est1=SHG805F,1,198
est2=AHN315F,4,194
est3=VHF883F,4,194
est4=VSH626F,9,167
est5=VSA214E,33,329
est6=VSG739F,38,200
est7=VSH626Z,170,527
Translated Amino Acid sequence 
lihfsfsyslaqhtncwkttfi*sifkniyicv*gvcvyytfylhqil*INYKKKKKKKK
RERKKKKMYRIGSSIKKSNQIRLATIRTTTNVVIRNYCSETSSTQPPPPEQGQETPKPII
KKKKQSREIFSEFVDDGDVVVDHRKHSQKKAVVDQRTQDFDKMLASLTMKDLKL
Translated Amino Acid sequence (All Frames) 
Frame A:
i*siflfhtrslntqivgkqhlfnlflkiyifvfevcvyiihfiyikyck*iikkkkkkk
kerekkkkcielvhqlknrikfd*qq*eqqqmllleiivqrhhqlnhhhqnkdkkhqnq*
lkkrnnqersfqnl*mmvmllliienihkrkqlsikelkisikcsqvsq*ki*s*


Frame B:
fdpffffilarsthkllenniyliyf*kyiylclrcvcilyilftsnivnkl*kkkkkkk
krekkkknv*nwfin*kiesnsisnnknnnkccy*kllfrdiinsttttrtrtrntktnn
*kketikrdlfricr*w*ccc*s*ktftkesscrsknsrfr*narkshnerfkvn


Frame C:
lihfsfsyslaqhtncwkttfi*sifkniyicv*gvcvyytfylhqil*INYKKKKKKKK
RERKKKKMYRIGSSIKKSNQIRLATIRTTTNVVIRNYCSETSSTQPPPPEQGQETPKPII
KKKKQSREIFSEFVDDGDVVVDHRKHSQKKAVVDQRTQDFDKMLASLTMKDLKL
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12785-1 (Contig-U12785-1Q)
/CSM_Contig/Contig-U12785-1Q.Seq.d
         (526 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Conti...   591  e-169
Contig-U14462-1 (Contig-U14462-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U04006-1 (Contig-U04006-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U02378-1 (Contig-U02378-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14248-1 (Contig-U14248-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11475-1 (Contig-U11475-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10933-1 (Contig-U10933-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U06494-1 (Contig-U06494-1Q) /CSM_Contig/Conti...    38  0.009

>Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Contig-U12785-1Q.Seq.d
          Length = 526

 Score =  591 bits (298), Expect = e-169
 Identities = 314/322 (97%)
 Strand = Plus / Plus

                                                                       
Query: 205 tgtatagaattggttcatcaattaaaaaatcgaatcaaattcgattagcaacaataagaa 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtatagaattggttcatcaattaaaaaatcgaatcaaattcgattagcaacaataagaa 264

                                                                       
Query: 265 caacaacaaatgttgttattagaaattattgttcagagacatcatcaactcaaccaccac 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacaacaaatgttgttattagaaattattgttcagagacatcatcaactcaaccaccac 324

                                                                       
Query: 325 caccagaacaaggacaagaaacaccaaaaccaataattnnnnnnnngaaacaatcaagag 384
           ||||||||||||||||||||||||||||||||||||||        ||||||||||||||
Sbjct: 325 caccagaacaaggacaagaaacaccaaaaccaataattaaaaaaaagaaacaatcaagag 384

                                                                       
Query: 385 agatcttttcagaatttgtagatgatggtgatgttgttgttgatcatagaaaacattcac 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatcttttcagaatttgtagatgatggtgatgttgttgttgatcatagaaaacattcac 444

                                                                       
Query: 445 aaaagaaagcagttgtcgatcaaagaactcaagatttcgataaaatgctcgcaagtctca 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaagaaagcagttgtcgatcaaagaactcaagatttcgataaaatgctcgcaagtctca 504

                                 
Query: 505 caatgaaagatttaaagttaat 526
           ||||||||||||||||||||||
Sbjct: 505 caatgaaagatttaaagttaat 526


 Score =  313 bits (158), Expect = 1e-85
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgatccatttttctttttcatactcgctcgctcaacacacaaattgttggaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttgatccatttttctttttcatactcgctcgctcaacacacaaattgttggaaaacaa 60

                                                                       
Query: 61  catttatttaatctatttttaaaaatatatatatttgtgtttgaggtgtgtgtgtatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catttatttaatctatttttaaaaatatatatatttgtgtttgaggtgtgtgtgtatatt 120

                                                 
Query: 121 atacattttatttacatcaaatattgtaaataaattat 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacattttatttacatcaaatattgtaaataaattat 158


 Score = 28.2 bits (14), Expect = 8.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 74 tatttttaaaaata 87
          ||||||||||||||
Sbjct: 87 tatttttaaaaata 74


 Score = 28.2 bits (14), Expect = 8.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 83 aaatatatatattt 96
          ||||||||||||||
Sbjct: 96 aaatatatatattt 83


>Contig-U14462-1 (Contig-U14462-1Q) /CSM_Contig/Contig-U14462-1Q.Seq.d
          Length = 203

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 76  tttttaaaaatatatatatttgtgt 100
           |||||||||| ||||||||||||||
Sbjct: 35  tttttaaaaaaatatatatttgtgt 11


>Contig-U04006-1 (Contig-U04006-1Q) /CSM_Contig/Contig-U04006-1Q.Seq.d
          Length = 563

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 405 gatgatggtgatgttgttgttgat 428
           |||| |||||||||||||||||||
Sbjct: 80  gatgttggtgatgttgttgttgat 57


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,064
Number of Sequences: 6905
Number of extensions: 25064
Number of successful extensions: 4548
Number of sequences better than 10.0: 907
length of query: 526
length of database: 5,674,871
effective HSP length: 16
effective length of query: 510
effective length of database: 5,564,391
effective search space: 2837839410
effective search space used: 2837839410
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Contig-U12785-1Q.Seq.d
         (526 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267730) Dictyostelium discoideum vegetative cDNA clone:VS...   313   e-168  2
(AU261356) Dictyostelium discoideum vegetative cDNA clone:VS...   240   4e-77  3
(BJ394954) Dictyostelium discoideum cDNA clone:dds37j02, 5' ...   121   8e-31  2
(BJ337369) Dictyostelium discoideum cDNA clone:dda57n03, 5' ...   105   4e-26  2
(AU267729) Dictyostelium discoideum vegetative cDNA clone:VS...   100   2e-24  2
(BJ421483) Dictyostelium discoideum cDNA clone:ddv42f22, 5' ...    70   9e-19  3
(AU266770) Dictyostelium discoideum vegetative cDNA clone:VS...    48   3e-09  2
(EH360359) NPAC-aaa03b04.g1 N.brasiliensis_EST_L3N_SL1 Nippo...    42   0.040  2
(EY308666) CAWX21157.fwd CAWX Helobdella robusta Primary Ear...    40   0.063  2
(CU041282) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.067  5
(AL845302) Zebrafish DNA sequence from clone CH211-108C6 in ...    50   0.080  1
(AC157489) Medicago truncatula clone mth2-70e3, complete seq...    50   0.080  1
(DY912506) CHAX7803.b1_F07.ab1 CHA(XYZ) common wild sunflowe...    50   0.080  1
(AC098145) Rattus norvegicus clone CH230-172C14, *** SEQUENC...    40   0.11   4
(BX908797) Zebrafish DNA sequence from clone DKEY-43P13 in l...    40   0.13   3
(AC098577) Rattus norvegicus clone CH230-87C18, WORKING DRAF...    46   0.15   2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   0.18   2
(EU675303) Themira superba clone BPYI, *** SEQUENCING IN PRO...    38   0.22   3
(CU633539) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.23   3
(CU633573) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.28   3
(AC215623) Populus trichocarpa clone POP004-A06, complete se...    48   0.32   1
(CU468707) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.32   1
(EY334060) CAWY6098.fwd CAWY Helobdella robusta Subtracted E...    48   0.32   1
(CU640443) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.40   2
(CU640456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.44   6
(AC094122) Rattus norvegicus clone CH230-2O3, WORKING DRAFT ...    46   0.46   5
(CU466414) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.50   4
(AC126856) Rattus norvegicus clone CH230-37L2, WORKING DRAFT...    42   0.57   6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.64   2
(AC096156) Rattus norvegicus clone CH230-11D15, WORKING DRAF...    34   0.66   2
(AC096245) Rattus norvegicus clone CH230-29B10, WORKING DRAF...    42   0.66   5
(AC099227) Rattus norvegicus clone CH230-44H22, *** SEQUENCI...    34   0.67   2
(AC069112) Homo sapiens chromosome 1 clone RP11-307K6 map 1,...    44   0.67   4
(AC139752) Mus musculus BAC clone RP24-258K1 from 12, comple...    36   0.67   2
(AC171605) Bos taurus clone CH240-268G17, WORKING DRAFT SEQU...    46   0.79   3
(AC184651) Strongylocentrotus purpuratus clone R3-3075J8, WO...    46   0.87   3
(DQ120981) Hucho taimen clone ZB-36 microsatellite sequence.       34   0.88   2
(BU225311) 603948207F1 CSEQCHN23 Gallus gallus cDNA clone Ch...    32   0.89   2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   0.89   9
(CU694718) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.99   5
(EF087983) Uncultured saccharomycete clone 13 internal trans...    42   1.0    2
(CU856604) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.1    4
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ...    34   1.1    5
(CU651649) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.2    3
(CU550666) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.2    3
(ER126729) 1095522059560 Global-Ocean-Sampling_GS-33-01-01-1...    34   1.2    2
(CU928601) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.2    3
(AC183980) Gallus gallus BAC clone CH261-97P7 from chromosom...    46   1.3    1
(AC171061) Gallus gallus BAC clone TAM32-9O12 from chromosom...    46   1.3    1
(AC171009) Gallus gallus BAC clone CH261-146H18 from chromos...    46   1.3    1
(BV226729) S233P6308RH9.T0 LabradorRetriever Canis familiari...    46   1.3    1
(AB165903) Bos taurus DNA, chromosome 10, DIK4757, sequence ...    46   1.3    1
(AC131332) Mus musculus chromosome 12, clone RP23-480O18, co...    46   1.3    1
(CR382137) Debaryomyces hansenii chromosome E of strain CBS7...    46   1.3    1
(AF270834) Saccharomyces pastorianus SPF1 gene, partial cds.       46   1.3    1
(DJ130064) Method for identification of useful proteins deri...    46   1.3    1
(AC134497) Rattus norvegicus clone CH230-461H23, WORKING DRA...    46   1.3    1
(AC134010) Rattus norvegicus clone CH230-225I15, *** SEQUENC...    46   1.3    1
(AC130030) Rattus norvegicus clone CH230-59C8, WORKING DRAFT...    46   1.3    1
(AC110934) Rattus norvegicus clone CH230-243M12, *** SEQUENC...    46   1.3    1
(AC108627) Rattus norvegicus clone CH230-65F4, *** SEQUENCIN...    46   1.3    1
(CU469083) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(AC176470) Strongylocentrotus purpuratus clone R3-3070D20, W...    46   1.3    1
(AC176014) Strongylocentrotus purpuratus clone R3-17N19, WOR...    46   1.3    1
(BH156648) ENTQU34TF Entamoeba histolytica Sheared DNA Entam...    46   1.3    1
(AL397193) T7 end of clone AS0AA001C10 of library AS0AA from...    46   1.3    1
(EB611076) AGENCOURT_54975433 D. mojavensis EST Drosophila m...    46   1.3    1
(EB230631) PEG003-C-204973-501 Normalized Pedal-Pleural Gang...    46   1.3    1
(EB226825) PEG002-C-110577-501 Normalized Pedal-Pleural Gang...    46   1.3    1
(CT763162) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   1.3    1
(CT758052) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   1.3    1
(EY324790) CAWY10503.fwd CAWY Helobdella robusta Subtracted ...    46   1.3    1
(EY323821) CAWX9216.fwd CAWX Helobdella robusta Primary Earl...    46   1.3    1
(EY307991) CAWX20779.fwd CAWX Helobdella robusta Primary Ear...    46   1.3    1
(EY293294) CAWX11046.fwd CAWX Helobdella robusta Primary Ear...    46   1.3    1
(CU633639) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.3    2
(AC120815) Rattus norvegicus clone CH230-485D20, WORKING DRA...    40   1.3    4
(CU571127) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.3    2
(CU607005) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.3    2
(CU571216) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.3    2
(AC097588) Sus scrofa clone RP44-521I10, WORKING DRAFT SEQUE...    42   1.4    2
(CU468352) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.4    5
(AJ583107) Venerupis rhomboideus 5S rRNA gene, clone TRH3.         36   1.4    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   1.4    6
(CU861614) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.4    2
(AC174073) Homo sapiens chromosome 4 clone WI2-912C7, comple...    38   1.5    2
(AP006413) Lotus japonicus genomic DNA, chromosome 6, clone:...    44   1.6    3
(CU012036) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.6    2
(AI760629) wi66e06.x1 NCI_CGAP_Kid12 Homo sapiens cDNA clone...    40   1.6    2
(CU657930) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.7    2
(FK111982) XABT156898.b1 Gateway compatible cien cDNA librar...    34   1.7    2
(CU466302) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.8    4
(CU469024) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.9    3
(BV007400) LS618 Meadowfoam genomic DNA Limnanthes alba STS ...    42   2.0    2
(DX950405) CHORI105-43H9.TR CHORI105.pEpiFOS5 Trypanosoma cr...    34   2.0    2
(FE245300) CAPG8787.fwd CAPG Naegleria gruberi amoeba stage ...    40   2.1    2
(AC177663) Strongylocentrotus purpuratus clone R3-1017M3, WO...    36   2.1    4
(AC121486) Rattus norvegicus clone CH230-44E12, *** SEQUENCI...    42   2.1    5
(FE244982) CAPG8522.fwd CAPG Naegleria gruberi amoeba stage ...    40   2.1    2
(AC180024) Strongylocentrotus purpuratus clone R3-23J20, WOR...    42   2.2    3

>(AU267730) Dictyostelium discoideum vegetative cDNA clone:VSH626,
           3' end single read.
          Length = 359

 Score =  313 bits (158), Expect(2) = e-168
 Identities = 158/158 (100%)
 Strand = Plus / Plus


Query: 205 tgtatagaattggttcatcaattaaaaaatcgaatcaaattcgattagcaacaataagaa 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37  tgtatagaattggttcatcaattaaaaaatcgaatcaaattcgattagcaacaataagaa 96


Query: 265 caacaacaaatgttgttattagaaattattgttcagagacatcatcaactcaaccaccac 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  caacaacaaatgttgttattagaaattattgttcagagacatcatcaactcaaccaccac 156


Query: 325 caccagaacaaggacaagaaacaccaaaaccaataatt 362
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caccagaacaaggacaagaaacaccaaaaccaataatt 194

 Score =  309 bits (156), Expect(2) = e-168
 Identities = 156/156 (100%)
 Strand = Plus / Plus


Query: 371 gaaacaatcaagagagatcttttcagaatttgtagatgatggtgatgttgttgttgatca 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaaacaatcaagagagatcttttcagaatttgtagatgatggtgatgttgttgttgatca 262


Query: 431 tagaaaacattcacaaaagaaagcagttgtcgatcaaagaactcaagatttcgataaaat 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagaaaacattcacaaaagaaagcagttgtcgatcaaagaactcaagatttcgataaaat 322


Query: 491 gctcgcaagtctcacaatgaaagatttaaagttaat 526
           ||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctcgcaagtctcacaatgaaagatttaaagttaat 358

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 568,647,594
Number of extensions: 47336320
Number of successful extensions: 4897078
Number of sequences better than 10.0: 309
Length of query: 526
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 503
Effective length of database: 93,106,754,628
Effective search space: 46832697577884
Effective search space used: 46832697577884
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Contig-U12785-1Q.Seq.d
         (526 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001184_336(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    32   7.3
AE015927_1659(AE015927|pid:none) Clostridium tetani E88, complet...    32   9.5

>CP001184_336(CP001184|pid:none) Ureaplasma urealyticum serovar 10
           str. ATCC 33699, complete genome.
          Length = 448

 Score = 32.3 bits (72), Expect = 7.3
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +3

Query: 390 FSEFVDDGDVVVDHRKHSQKKAVVDQRTQDFDKMLASLTMKDLKL 524
           FS+F+ D D ++   K+++KKA+ DQ  + F+K+L     + +K+
Sbjct: 349 FSDFISD-DEIISPEKYTEKKALNDQINEMFEKVLNDNEQRVIKM 392

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 528,634,148
Number of extensions: 7409908
Number of successful extensions: 12783
Number of sequences better than 10.0: 2
Number of HSP's gapped: 12779
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 55
Effective length of database: 662,793,784
Effective search space: 36453658120
Effective search space used: 36453658120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.09  gvh: 0.36  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.08
 nuc: 0.67  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U12785-1 is nuc
VS (DIR, S) 3
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0