| Contig-U12781-1 |
| Contig ID |
Contig-U12781-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
646 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
2187688 |
| End point |
2187052 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U12781 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 3 |
| Homology vs DNA |
|
| protein update |
2009. 7. 4 |
| Homology vs Protein |
Query= Contig-U12781-1 (Contig-U12781-1Q) /CSM_Contig/Contig-U12781-1Q.Seq.d
(646 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM920435_850(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 47 6e-04
AJ310551_1(AJ310551|pid:none) Homo sapiens mRNA for SMC6 protein. 46 0.001
(Q96SB8) RecName: Full=Structural maintenance of chromosomes pro... 46 0.001
AK135873_1(AK135873|pid:none) Mus musculus in vitro fertilized e... 44 0.004
AK148478_1(AK148478|pid:none) Mus musculus adult pancreas islet ... 44 0.004
(Q6P9I7) RecName: Full=Structural maintenance of chromosomes pro... 44 0.005
CP000480_4412(CP000480|pid:none) Mycobacterium smegmatis str. MC... 40 0.045
CP001638_2968(CP001638|pid:none) Geobacillus sp. WCH70, complete... 40 0.059
A19336_1(A19336|pid:none) albumin binding protein. &A29838_1(A2... 39 0.10
A29840_1(A29840|pid:none) P16M1 gene sequence. 39 0.10
CR548612_240(CR548612|pid:none) Paramecium tetraurelia macronucl... 38 0.22
AC116960_55(AC116960|pid:none) Dictyostelium discoideum chromoso... 38 0.29
EF421931_1(EF421931|pid:none) Lactobacillus reuteri strain ATCC ... 37 0.38
(P36123) RecName: Full=SIT4-associating protein SAP190; &U50561... 37 0.38
BC032675_1(BC032675|pid:none) Homo sapiens structural maintenanc... 37 0.38
CP000568_1837(CP000568|pid:none) Clostridium thermocellum ATCC 2... 37 0.50
AB375440_2(AB375440|pid:none) Pseudomonas aeruginosa plasmid Rms... 37 0.50
AM270257_15(AM270257|pid:none) Aspergillus niger contig An11c040... 37 0.50
AK340847_1(AK340847|pid:none) Acyrthosiphon pisum ACYPI33755 mRN... 37 0.50
(P19401) RecName: Full=M protein, serotype 12; Flags: Precursor;... 37 0.50
AB047403_1(AB047403|pid:none) Streptococcus pyogenes gene for M1... 37 0.65
(Q5X9Q9) RecName: Full=M protein, serotype 6; Flags: Precursor; ... 37 0.65
CP000261_1748(CP000261|pid:none) Streptococcus pyogenes MGAS2096... 37 0.65
AK296903_1(AK296903|pid:none) Homo sapiens cDNA FLJ56563 partial... 37 0.65
AB016537_3(AB016537|pid:none) Streptococcus pyogenes genes for O... 37 0.65
A44643(A44643;S60833)M protein precursor - Streptococcus pyogene... 37 0.65
JC1419(JC1419;S17354) Fc gamma (IgG) receptor II precursor - Str... 37 0.65
(P08089) RecName: Full=M protein, serotype 6; Flags: Precursor; ... 37 0.65
CP000259_1723(CP000259|pid:none) Streptococcus pyogenes MGAS9429... 37 0.65
BC168110_1(BC168110|pid:none) Xenopus tropicalis cDNA clone IMAG... 36 0.85
M95774_1(M95774|pid:none) Group G streptococci M protein gene, c... 36 0.85
AC018929_20(AC018929|pid:none) Oryza sativa chromosome 10 BAC OS... 36 0.85
D25543_1(D25543|pid:none) Rattus norvegicus mRNA for novel golgi... 36 0.85
CP000284_1398(CP000284|pid:none) Methylobacillus flagellatus KT,... 36 0.85
CP000777_3268(CP000777|pid:none) Leptospira biflexa serovar Pato... 36 1.1
AB088420_51(AB088420|pid:none) Pseudomonas resinovorans plasmid ... 36 1.1
AF143463_1(AF143463|pid:none) Borrelia hermsii strain Man BdrB1 ... 35 1.4
(Q90038) RecName: Full=Nucleoprotein; AltName: Full=Nucleocapsid... 35 1.4
AY351855_1(AY351855|pid:none) Streptococcus pyogenes strain NS26... 35 1.4
CR954203_280(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 35 1.4
AE013599_4246(AE013599|pid:none) Drosophila melanogaster chromos... 35 1.4
AJ133440_3(AJ133440|pid:none) Streptococcus dysgalactiae subsp. ... 35 1.4
U35816_4(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 35 1.4
X80168_1(X80168|pid:none) S.pyogenes emm3 gene. 35 1.4
CP000025_577(CP000025|pid:none) Campylobacter jejuni RM1221, com... 35 1.4
AE013599_4247(AE013599|pid:none) Drosophila melanogaster chromos... 35 1.4
AE013599_4245(AE013599|pid:none) Drosophila melanogaster chromos... 35 1.4
S61477(S61477;S65349)myosin II heavy chain, non-muscle - fruit f... 35 1.4
DQ099911_3(DQ099911|pid:none) Lactobacillus plantarum cryptic pl... 35 1.4
U35816_3(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 35 1.4
CP000655_319(CP000655|pid:none) Polynucleobacter necessarius sub... 35 1.4
AE013599_4244(AE013599|pid:none) Drosophila melanogaster chromos... 35 1.4
U35816_2(U35816|pid:none) Drosophila melanogaster nonmuscle myos... 35 1.4
EF460474_1(EF460474|pid:none) Streptococcus pyogenes M protein (... 35 1.9
CP000323_1892(CP000323|pid:none) Psychrobacter cryohalolentis K5... 35 1.9
(Q14789) RecName: Full=Golgin subfamily B member 1; AltName: Ful... 35 1.9
EF460472_1(EF460472|pid:none) Streptococcus pyogenes M protein (... 35 1.9
CP000414_1484(CP000414|pid:none) Leuconostoc mesenteroides subsp... 35 1.9
AY600861_1(AY600861|pid:none) Streptococcus sp. 'group G' FOG pr... 35 1.9
S35401(S35401;S61074;S60784) M1 protein precursor - Streptococcu... 35 1.9
AK300437_1(AK300437|pid:none) Homo sapiens cDNA FLJ61596 partial... 35 1.9
AB371588_1(AB371588|pid:none) Homo sapiens GOLGB1 mRNA for golgi... 35 1.9
X66816_1(X66816|pid:none) S.pyogenes emm3 gene for M protein, 3'... 35 1.9
U66005_1(U66005|pid:none) Streptococcus pyogenes M protein gene,... 35 1.9
CP000393_242(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 35 1.9
D25542_1(D25542|pid:none) Homo sapiens mRNA for golgi antigen gc... 35 1.9
CP000742_47(CP000742|pid:none) Methanococcus vannielii SB, compl... 35 1.9
CP000806_3293(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 35 1.9
A56539(A56539;S37536) giantin - human &X75304_1(X75304|pid:none) 35 1.9
X72090_1(X72090|pid:none) S.pyogenes emm55 gene for M-protein. 35 1.9
CP000361_314(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 35 2.5
S38100(S38100) hypothetical protein YKR028w - yeast (Saccharomyc... 35 2.5
CR382398_75(CR382398|pid:none) Plasmodium falciparum chromosome ... 35 2.5
CP000227_788(CP000227|pid:none) Bacillus cereus Q1, complete gen... 35 2.5
DQ489736_1040(DQ489736|pid:none) Leuconostoc citreum KM20, compl... 35 2.5
(Q54G96) RecName: Full=Uncharacterized protein DDB_G0290301; 35 2.5
AL844505_75(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 35 2.5
(Q8I1U7) RecName: Full=Structural maintenance of chromosomes pro... 35 2.5
CP000679_172(CP000679|pid:none) Caldicellulosiruptor saccharolyt... 34 3.2
AE008691_1937(AE008691|pid:none) Thermoanaerobacter tengcongensi... 34 3.2
AY701514_1(AY701514|pid:none) Yunnan orbivirus segment 6, comple... 34 3.2
AB016887_2(AB016887|pid:none) Arabidopsis thaliana genomic DNA, ... 34 3.2
(P08964) RecName: Full=Myosin-1; AltName: Full=Type II myosin; ... 34 3.2
AF027728_1(AF027728|pid:none) Xenopus laevis kinesin-related pro... 34 3.2
AM470911_1(AM470911|pid:none) Vitis vinifera contig VV78X231012.... 34 3.2
X93464_1(X93464|pid:none) Streptococcus dysgalactiae subsp. equi... 34 3.2
CP000903_702(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 34 3.2
AC116957_105(AC116957|pid:none) Dictyostelium discoideum chromos... 34 3.2
AY351846_1(AY351846|pid:none) Streptococcus pyogenes strain NS10... 34 4.2
BX842596_12(BX842596|pid:none) Neurospora crassa DNA linkage gro... 34 4.2
AF019980_1(AF019980|pid:none) Dictyostelium discoideum ZipA (zip... 34 4.2
CP000813_3122(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 34 4.2
(Q8CPQ1) RecName: Full=Bifunctional autolysin; Includes: RecNa... 34 4.2
AY351850_1(AY351850|pid:none) Streptococcus pyogenes strain NS32... 34 4.2
(P49054) RecName: Full=Plasminogen-binding group A steptococcal ... 34 4.2
AY351851_1(AY351851|pid:none) Streptococcus pyogenes strain NS13... 34 4.2
X72932_2(X72932|pid:none) S.pyogenes genes for Fcr protein and M... 34 4.2
DQ340064_22(DQ340064|pid:none) Geobacillus phage GBSV1, complete... 34 4.2
CP000485_683(CP000485|pid:none) Bacillus thuringiensis str. Al H... 34 4.2
CP000382_1316(CP000382|pid:none) Clostridium novyi NT, complete ... 34 4.2
CP001083_3102(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 33 5.4
CP000962_2947(CP000962|pid:none) Clostridium botulinum A3 str. L... 33 5.4
X58179_1(X58179|pid:none) S.pyogenes for emm52 gene. 33 5.5
AY351853_1(AY351853|pid:none) Streptococcus pyogenes strain NS25... 33 5.5
U29585_1(U29585|pid:none) Streptococcus pyogenes emm18.1 gene, c... 33 5.5
(Q5HPA2) RecName: Full=Extracellular matrix-binding protein ebh;... 33 5.5
DQ653303_1(DQ653303|pid:none) Arabidopsis thaliana clone 0000010... 33 5.5
CP000828_2346(CP000828|pid:none) Acaryochloris marina MBIC11017,... 33 5.5
(Q8CP76) RecName: Full=Extracellular matrix-binding protein ebh;... 33 5.5
CP000029_988(CP000029|pid:none) Staphylococcus epidermidis RP62A... 33 5.5
X60098_1(X60098|pid:none) Streptococcus sp. (group G) emm gene f... 33 5.5
AE015451_4988(AE015451|pid:none) Pseudomonas putida KT2440 compl... 33 5.5
EU009112_1(EU009112|pid:none) Tetrahymena thermophila RNA-depend... 33 5.5
CR382139_818(CR382139|pid:none) Debaryomyces hansenii strain CBS... 33 5.5
AY351857_1(AY351857|pid:none) Streptococcus pyogenes strain NS45... 33 5.5
AY351854_1(AY351854|pid:none) Streptococcus pyogenes strain NS22... 33 5.5
DQ136319_1(DQ136319|pid:none) Streptococcus pyogenes strain NS22... 33 5.5
(A7ZE26) RecName: Full=Bifunctional protein hldE; Includes: Re... 33 5.5
B83918(B83918) hypothetical protein BH2146 [imported] - Bacillus... 33 5.5
CP001283_806(CP001283|pid:none) Bacillus cereus AH820, complete ... 33 5.5
AE009949_1710(AE009949|pid:none) Streptococcus pyogenes MGAS8232... 33 5.5
DQ446981_1(DQ446981|pid:none) Arabidopsis thaliana clone pENTR22... 33 5.5
CP000713_1859(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 33 5.5
AY351852_1(AY351852|pid:none) Streptococcus pyogenes strain NS53... 33 5.5
S30283(S30283;S29680)protein M precursor - Streptococcus pyogene... 33 5.5
AE017194_885(AE017194|pid:none) Bacillus cereus ATCC 10987, comp... 33 5.5
S30284(S30284;S29681)M protein precursor - Streptococcus pyogene... 33 5.5
AM295250_2418(AM295250|pid:none) Staphylococcus carnosus subsp. ... 33 5.5
BT043573_1(BT043573|pid:none) Salmo salar clone HM4_2542 compone... 33 5.5
AF120932_1(AF120932|pid:none) Arabidopsis thaliana SMC-like prot... 33 7.2
(Q9JIL8) RecName: Full=DNA repair protein RAD50; EC=3.6... 33 7.2
CP000884_739(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 33 7.2
(P56716) RecName: Full=Oxygen-regulated protein 1; AltName: Full... 33 7.2
CR628337_1094(CR628337|pid:none) Legionella pneumophila str. Len... 33 7.2
AF146593_1(AF146593|pid:none) Mus musculus photoreceptor specifi... 33 7.2
CR954211_16(CR954211|pid:none) Ostreococcus tauri strain OTTH059... 33 7.2
BC166248_1(BC166248|pid:none) Xenopus tropicalis hypothetical pr... 33 7.2
BC028267_1(BC028267|pid:none) Mus musculus retinitis pigmentosa ... 33 7.2
CR380953_99(CR380953|pid:none) Candida glabrata strain CBS138 ch... 33 7.2
EF460479_1(EF460479|pid:none) Streptococcus pyogenes M protein (... 33 7.2
BC096607_1(BC096607|pid:none) Mus musculus retinitis pigmentosa ... 33 7.2
AE017226_1485(AE017226|pid:none) Treponema denticola ATCC 35405,... 33 7.2
FJ156070_1(FJ156070|pid:none) Kahliella sp. TT2005 chromosome Te... 33 7.2
AL645741_5(AL645741|pid:none) Mouse DNA sequence from clone RP23... 33 9.4
CU640366_420(CU640366|pid:none) Podospora anserina genomic DNA c... 33 9.4
(P53692) RecName: Full=Structural maintenance of chromosomes pro... 33 9.4
T47237(T47237) myosin II heavy chain [imported] - Naegleria fowl... 33 9.4
CP000382_1391(CP000382|pid:none) Clostridium novyi NT, complete ... 33 9.4
AE017346_327(AE017346|pid:none) Cryptococcus neoformans var. neo... 33 9.4
CR382122_84(CR382122|pid:none) Kluyveromyces lactis strain NRRL ... 33 9.4
CP000227_4083(CP000227|pid:none) Bacillus cereus Q1, complete ge... 33 9.4
AM920436_71(AM920436|pid:none) Penicillium chrysogenum Wisconsin... 33 9.4
AB058704_1(AB058704|pid:none) Homo sapiens mRNA for KIAA1801 pro... 33 9.4
AM270256_3(AM270256|pid:none) Aspergillus niger contig An11c0390... 33 9.4
CP000642_1(CP000642|pid:none) Shigella sonnei Ss046 plasmid pSS0... 33 9.4
CP000712_5055(CP000712|pid:none) Pseudomonas putida F1, complete... 33 9.4
BC058180_1(BC058180|pid:none) Mus musculus RAD50 homolog (S. cer... 33 9.4
>AM920435_850(AM920435|pid:none) Penicillium chrysogenum Wisconsin
54-1255 complete genome, contig Pc00c20.
Length = 1141
Score = 46.6 bits (109), Expect = 6e-04
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Frame = +2
Query: 122 ELDPSLATVLRVLDSPSHFIINFLIDTKKVEQIGLGNDRKEIDSVLYTDRCPRGLSQFFD 301
E DP TVLR L + + LI +EQ+ L D E +VL+ P + + +
Sbjct: 621 EPDPQYKTVLRTLQIDNELVRRQLIINHGIEQMLLIEDVNEASTVLFDGARPINVKRCYS 680
Query: 302 ------PQGNNYSKTKSGNPFYQAAKNSGEATMLRVNSDAAIQ-RTQRDMESKLPALNQQ 460
+G + S +++G P G R+ SD A+Q QRD+ + L QQ
Sbjct: 681 IDSKDRRRGLHLSYSRAGEP--SQGPVMGWTDGPRMESDVALQINAQRDIIADLQ--RQQ 736
Query: 461 KKIEQEL---SSDVQAIEHKISQNDQDQNQCSRKILQITNEIKSIEDTLVQQTDDYSELE 631
K IEQ L S V+A + +Q+ + + ++ ++ + + + D L ++ + ++
Sbjct: 737 KDIEQSLVTARSRVEACKQASAQHVRTEKDLQIQMQRMEDHAEGLRDALDKENAEDGRID 796
Query: 632 IGLAS 646
LA+
Sbjct: 797 ALLAA 801
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,108,638,899
Number of extensions: 22623577
Number of successful extensions: 56641
Number of sequences better than 10.0: 157
Number of HSP's gapped: 56539
Number of HSP's successfully gapped: 165
Length of query: 215
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 92
Effective length of database: 653,084,107
Effective search space: 60083737844
Effective search space used: 60083737844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
1 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |