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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12777-1
Contig ID Contig-U12777-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12777-1 (Contig-U12777-1Q) /CSM_Contig/Contig-U12777-1Q.Seq.d
ATCAATTTATAGTGCATATTTAAAACAATTAGAAAAAGGTAAAACTGAAG
AAGATTTGGAGGAATTGGGTAAAGAGATGACATTACTATGTGAAGAGGAG
GAACAATTACGTTTAATGATTGAAAATACACATCAAGAGAGAAAAGAAGT
TGAACAATTAACATTACAACTTCAAGATAGAATTGCAACGTTGAAATCAT
TGGAAGATAGTTATTGGAGTTGTTTTAGTGAATTTCATTATGAAACTTTT
AGAAATAAAGACGAGAGAGATCAAACCACCGTTCAAATTCAATGGGTTAA
TGACCATTTAGAAAGTTTAAAACAAACCAATATTCTCAATGATGCTTTCC
ATCTATGGCATGATGGTCATTTTGGTACTATAAATTCATTACGTCTTGGA
AAGTTACCAAGTCAACCAGTGGAATGGAACGAGATCAATGCAGCATGGGG
GTTTAGCAGTATCACTTTTGGATGCAATGGCAAAGAAGTTGAAATTTAAA
TTCCAACAATTCACATTGGTACCAAATGGTAGTTGTTCAAGAGTTGATAA
AAGAGATGTTGATCCACCATTGGCCTATGAACTTTATGGTACCAATGATA
TTAGTTTAGGTCGTTTATTTTGGTATAGACGTTTCGATAATGGTATGATT
GCTTTCCTTCAATGCATTAAAGAACTATGTGAACATATCACTGAAAAAGA
TCCAGAATTCTCTGTTCCCTACAAAATCGATAAAGAATATATAGGTGGAA
TGTGTATTAAATTACAATTCACAAATGATGATACTTGGACAAAATCTTTG
AAATTTATGTTAACAAACTTAAAATGGATCTTAATTTGGATTGTTAAAAA
TGAAACTTTAACTTTATTTAATAATCAACAATTTCAACAATCAAAATTAA
ATAATAATCAAAATAATAATAATATTAATAATAATAATNATAATAATATT
AATAAGAATNATAATAAT
Gap no gap
Contig length 968
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 982107
End point 983075
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U12777
List of clone(s) 

est1=VSH193E,1,969
est2=AHM558Z,311,804
Translated Amino Acid sequence 
qfivhi*nn*kkvklkkiwrnwvkr*hyyvkrrnnyv**lkihikrekklnn*hynfkie
lqr*nhwkivigvvlvnfimklleiktreikppfkfnglmti*kv*nkpifsmmlsiygm
mvilvl*IHYVLESYQVNQWNGTRSMQHGGLAVSLLDAMAKKLKFKFQQFTLVPNGSCSR
VDKRDVDPPLAYELYGTNDISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPY
KIDKEYIGGMCIKLQFTNDDTWTKSLKFMLTNLKWILIWIVKNETLTLFNNQQFQQSKLN
NNQNNNNINNNNXNNINKNXNN
Translated Amino Acid sequence (All Frames) 
Frame A:
inl*cifktirkr*n*rrfggig*rdditm*rggtitfnd*kytsrekrs*tinittsr*
ncnveiigr*llelf**isl*nf*k*rrersnhrsnsmg**pfrkfktnqysq*cfpsma
*wsfwyykfitswkvtkstsgmerdqcsmgv*qyhfwmqwqrs*nlnsnnshwyqmvvvq
elikemlihhwpmnfmvpmilv*vvyfgidvsimv*llsfnalknyvnislkkiqnslfp
tksikni*vecvlnynsqmmilgqnl*nlc*qt*ngs*fgllkmkl*lyliinnfnnqn*
iiikiiiiliiixiiilirxii


Frame B:
siysaylkqlekgkteedleelgkemtllceeeeqlrlmienthqerkeveqltlqlqdr
iatlksledsywscfsefhyetfrnkderdqttvqiqwvndhleslkqtnilndafhlwh
dghfgtinslrlgklpsqpvewneinaawgfssitfgcngkevei*iptihigtkw*lfk
s**krc*stigl*tlwyq*y*frsfilv*tfr*wydcfpsmh*rtm*tyh*krsrilcsl
qnr*riyrwnvy*itihk**yldkifeiyvnklkmdlnldc*k*nfnfi**stistikik
**sk***y****x**y**ex**


Frame C:
qfivhi*nn*kkvklkkiwrnwvkr*hyyvkrrnnyv**lkihikrekklnn*hynfkie
lqr*nhwkivigvvlvnfimklleiktreikppfkfnglmti*kv*nkpifsmmlsiygm
mvilvl*IHYVLESYQVNQWNGTRSMQHGGLAVSLLDAMAKKLKFKFQQFTLVPNGSCSR
VDKRDVDPPLAYELYGTNDISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPY
KIDKEYIGGMCIKLQFTNDDTWTKSLKFMLTNLKWILIWIVKNETLTLFNNQQFQQSKLN
NNQNNNNINNNNXNNINKNXNN
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12777-1 (Contig-U12777-1Q)
/CSM_Contig/Contig-U12777-1Q.Seq.d
         (968 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12777-1 (Contig-U12777-1Q) /CSM_Contig/Conti...  1715  0.0
Contig-U13943-1 (Contig-U13943-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    36  0.068
Contig-U10088-1 (Contig-U10088-1Q) /CSM_Contig/Conti...    36  0.068
Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Conti...    36  0.068
Contig-U14597-1 (Contig-U14597-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U14517-1 (Contig-U14517-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U14334-1 (Contig-U14334-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U14047-1 (Contig-U14047-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Conti...    34  0.27

>Contig-U12777-1 (Contig-U12777-1Q) /CSM_Contig/Contig-U12777-1Q.Seq.d
          Length = 968

 Score = 1715 bits (865), Expect = 0.0
 Identities = 865/865 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaatttatagtgcatatttaaaacaattagaaaaaggtaaaactgaagaagatttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcaatttatagtgcatatttaaaacaattagaaaaaggtaaaactgaagaagatttgga 60

                                                                       
Query: 61  ggaattgggtaaagagatgacattactatgtgaagaggaggaacaattacgtttaatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggaattgggtaaagagatgacattactatgtgaagaggaggaacaattacgtttaatgat 120

                                                                       
Query: 121 tgaaaatacacatcaagagagaaaagaagttgaacaattaacattacaacttcaagatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaaatacacatcaagagagaaaagaagttgaacaattaacattacaacttcaagatag 180

                                                                       
Query: 181 aattgcaacgttgaaatcattggaagatagttattggagttgttttagtgaatttcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgcaacgttgaaatcattggaagatagttattggagttgttttagtgaatttcatta 240

                                                                       
Query: 241 tgaaacttttagaaataaagacgagagagatcaaaccaccgttcaaattcaatgggttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaaacttttagaaataaagacgagagagatcaaaccaccgttcaaattcaatgggttaa 300

                                                                       
Query: 301 tgaccatttagaaagtttaaaacaaaccaatattctcaatgatgctttccatctatggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaccatttagaaagtttaaaacaaaccaatattctcaatgatgctttccatctatggca 360

                                                                       
Query: 361 tgatggtcattttggtactataaattcattacgtcttggaaagttaccaagtcaaccagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgatggtcattttggtactataaattcattacgtcttggaaagttaccaagtcaaccagt 420

                                                                       
Query: 421 ggaatggaacgagatcaatgcagcatgggggtttagcagtatcacttttggatgcaatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaatggaacgagatcaatgcagcatgggggtttagcagtatcacttttggatgcaatgg 480

                                                                       
Query: 481 caaagaagttgaaatttaaattccaacaattcacattggtaccaaatggtagttgttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaagaagttgaaatttaaattccaacaattcacattggtaccaaatggtagttgttcaa 540

                                                                       
Query: 541 gagttgataaaagagatgttgatccaccattggcctatgaactttatggtaccaatgata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gagttgataaaagagatgttgatccaccattggcctatgaactttatggtaccaatgata 600

                                                                       
Query: 601 ttagtttaggtcgtttattttggtatagacgtttcgataatggtatgattgctttccttc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttagtttaggtcgtttattttggtatagacgtttcgataatggtatgattgctttccttc 660

                                                                       
Query: 661 aatgcattaaagaactatgtgaacatatcactgaaaaagatccagaattctctgttccct 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatgcattaaagaactatgtgaacatatcactgaaaaagatccagaattctctgttccct 720

                                                                       
Query: 721 acaaaatcgataaagaatatataggtggaatgtgtattaaattacaattcacaaatgatg 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acaaaatcgataaagaatatataggtggaatgtgtattaaattacaattcacaaatgatg 780

                                                                       
Query: 781 atacttggacaaaatctttgaaatttatgttaacaaacttaaaatggatcttaatttgga 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atacttggacaaaatctttgaaatttatgttaacaaacttaaaatggatcttaatttgga 840

                                    
Query: 841 ttgttaaaaatgaaactttaacttt 865
           |||||||||||||||||||||||||
Sbjct: 841 ttgttaaaaatgaaactttaacttt 865


>Contig-U13943-1 (Contig-U13943-1Q) /CSM_Contig/Contig-U13943-1Q.Seq.d
          Length = 1063

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 acattacaacttcaagataga 181
           |||||||||||||||||||||
Sbjct: 234 acattacaacttcaagataga 254


>Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Contig-U12095-1Q.Seq.d
          Length = 2532

 Score = 36.2 bits (18), Expect = 0.068
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 168  aacttcaagatagaattg 185
            ||||||||||||||||||
Sbjct: 1938 aacttcaagatagaattg 1955


 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 134  caagagagaaaagaa 148
            |||||||||||||||
Sbjct: 1447 caagagagaaaagaa 1461


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,400
Number of Sequences: 6905
Number of extensions: 10400
Number of successful extensions: 1050
Number of sequences better than 10.0: 114
length of query: 968
length of database: 5,674,871
effective HSP length: 16
effective length of query: 952
effective length of database: 5,564,391
effective search space: 5297300232
effective search space used: 5297300232
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12777-1 (Contig-U12777-1Q) /CSM_Contig/Contig-U12777-1Q.Seq.d
         (968 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267057) Dictyostelium discoideum vegetative cDNA clone:VS...   957   0.0    1
(BJ355346) Dictyostelium discoideum cDNA clone:dda56c15, 3' ...   708   0.0    2
(AU267058) Dictyostelium discoideum vegetative cDNA clone:VS...   835   0.0    2
(EV429151) 210785491 NVP Nasonia vitripennis cDNA clone 197E...    40   0.009  2
(AM160534) Xenoturbella bocki EST, clone Xet15_B10.                40   0.042  2
(AC153947) Mus musculus 10 BAC RP24-408C20 (Roswell Park Can...    50   0.16   1
(AC100312) Mus musculus clone RP23-123M12, LOW-PASS SEQUENCE...    50   0.16   1
(AC006842) Caenorhabditis elegans clone Y104H12X, *** SEQUEN...    40   0.35   3
(CU565519) Zebrafish DNA sequence from clone CH1073-201I17 i...    48   0.62   1
(BC063319) Danio rerio beclin 1 (coiled-coil, myosin-like BC...    48   0.62   1
(AM051360) Takifugu rubripes mRNA for beclin 1 (atg6 gene).        48   0.62   1
(AB266448) Danio rerio mRNA for beclin1, complete cds.             48   0.62   1
(CU207386) Mouse DNA sequence from clone DN-202E11 on chromo...    48   0.62   1
(AL670959) Mouse DNA sequence from clone RP23-94L5 on chromo...    48   0.62   1
(EB836887) 6674577 KZ58 Danio rerio cDNA clone 2537246, mRNA...    48   0.62   1
(CR962138) Medicago truncatula chromosome 5 clone mth2-18j8,...    40   1.9    6
(CR760359) Xenopus tropicalis finished cDNA, clone TNeu032c22.     46   2.5    1
(BC135115) Xenopus tropicalis beclin 1, autophagy related, m...    46   2.5    1
(BC073292) Xenopus laevis beclin 1, mRNA (cDNA clone MGC:806...    46   2.5    1
(AM051356) Xenopus tropicalis mRNA for beclin 1 (atg6 gene).       46   2.5    1
(FH141234) CHO_OF3703xc09f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   2.5    1
(EJ108151) 1092343144780 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.5    1
(EL824020) CBWN7491.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ...    46   2.5    1
(EL819205) CBWN4332.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ...    46   2.5    1
(EL725920) CBSS6575.fwd NICHD_XGC_tropSp1 Xenopus (Silurana)...    46   2.5    1
(EG579892) AGENCOURT_88092037 NIH_ZGC_26 Danio rerio cDNA cl...    46   2.5    1
(EE307706) AGENCOURT_86381592 NICHD_XGC_panc Xenopus laevis ...    46   2.5    1
(DT415254) JGI_CABI12907.fwd NIH_XGC_tropOvi1 Xenopus (Silur...    46   2.5    1
(DT410515) JGI_CABI10254.fwd NIH_XGC_tropOvi1 Xenopus (Silur...    46   2.5    1
(DT409199) JGI_CABI9458.rev NIH_XGC_tropOvi1 Xenopus (Silura...    46   2.5    1
(DT403736) JGI_CABI6359.rev NIH_XGC_tropOvi1 Xenopus (Silura...    46   2.5    1
(DT079551) AGENCOURT_55785312 NICHD_XGC_FaBN Xenopus laevis ...    46   2.5    1
(DR856322) JGI_CABG2756.fwd NIH_XGC_tropSto1 Xenopus (Silura...    46   2.5    1
(DR856321) JGI_CABG2756.rev NIH_XGC_tropSto1 Xenopus (Silura...    46   2.5    1
(DN077308) JGI_CABD10283.fwd NIH_XGC_tropLun1 Xenopus (Silur...    46   2.5    1
(CX934685) JGI_CAAO3953.rev NIH_XGC_tropTe5 Xenopus (Siluran...    46   2.5    1
(CX931734) JGI_CAAO1941.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    46   2.5    1
(CX459195) JGI_XZG28015.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   2.5    1
(CX392888) JGI_XZT40372.fwd NIH_XGC_tropTad5 Xenopus (Silura...    46   2.5    1
(CX344211) JGI_XZT23412.fwd NIH_XGC_tropTad5 Xenopus (Silura...    46   2.5    1
(CD329973) AGENCOURT_14150500 NICHD_XGC_Brn1 Xenopus laevis ...    46   2.5    1
(BX686595) Xenopus tropicalis EST, clone TNeu059l21 3'.            46   2.5    1
(BQ737390) AGENCOURT_8094954 NICHD_XGC_Emb4 Xenopus laevis c...    46   2.5    1
(BJ071652) Xenopus laevis cDNA clone:XL095a22, 5' end, singl...    46   2.5    1
(BJ057983) Xenopus laevis cDNA clone:XL051g20, 5' end, singl...    46   2.5    1
(FG743059) G1145P339FJ22.T0 Anolis carolinensis pooled norma...    46   2.5    1
(FE816992) CCAG33206.g1 CCAG Petrolisthes cinctipes heart, g...    46   2.5    1
(FE816991) CCAG33206.b1 CCAG Petrolisthes cinctipes heart, g...    46   2.5    1
(EY192304) RSAA-aaa47d10.g1 R.similis_EST_RSAA Radopholus si...    46   2.5    1
(AC079352) Homo sapiens BAC clone RP11-915C24 from 2, comple...    40   4.8    3
(AM615705) Entamoeba invadens IP1 GSS, clone inv065g12.p1k.        32   6.2    2
(AM623298) Entamoeba invadens IP1 GSS, clone inv122h06.p1k.        32   6.3    2
(AM614428) Entamoeba invadens IP1 GSS, clone inv048f03.q1k.        32   6.3    2
(CC717174) OGLBN24TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    38   7.5    2
(CC717183) OGLBN24TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    38   7.8    2
(CG456189) PUFXF41TDB ZM_0.6_1.0_KB Zea mays genomic clone Z...    38   7.9    2
(CG443969) OGVGF06TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    38   8.0    2
(CG104768) PUFXF41TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    38   8.2    2
(CG104766) PUFXF41TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    38   8.3    2
(DU970224) 379736 Tomato MboI BAC Library Solanum lycopersic...    36   8.5    2
(AJ720008) Gallus gallus mRNA for hypothetical protein, clon...    44   9.7    1
(AF067217) Caenorhabditis elegans cosmid F56A6, complete seq...    44   9.7    1
(AC114858) Rattus norvegicus clone CH230-86H24, *** SEQUENCI...    44   9.7    1
(AC113704) Rattus norvegicus clone CH230-100C24, WORKING DRA...    44   9.7    1
(AP007536) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   9.7    1
(AC223879) Bos taurus clone CH240-455H10, WORKING DRAFT SEQU...    44   9.7    1
(AC195463) Zea mays chromosome 2 clone CH201-231M12; ZMMBBc0...    44   9.7    1
(AC191134) Zea mays chromosome 2 clone CH201-10C15; ZMMBBc00...    44   9.7    1
(AC006889) Caenorhabditis elegans clone Y65B4, *** SEQUENCIN...    44   9.7    1
(ER348778) 1092345434583 Global-Ocean-Sampling_GS-34-01-01-1...    44   9.7    1
(ER289897) 1092343594790 Global-Ocean-Sampling_GS-34-01-01-1...    44   9.7    1
(DU792609) APKH4642.g2 HF770_12-21-03 uncultured marine micr...    44   9.7    1
(CE783577) tigr-gss-dog-17000330809244 Dog Library Canis lup...    44   9.7    1
(ES809105) UFL_257_72 Cotton fiber 0-10 day post anthesis Go...    44   9.7    1
(ES285415) PT009G6.XT7 in vitro interaction, P. brassicae Ph...    44   9.7    1
(DR414199) gPGC_EST04041 Embryonic gonadal PGC cDNA Library ...    44   9.7    1
(AM070826) Gallus gallus EST, clone C0000798I05_T7.                44   9.7    1
(AJ736478) Gallus gallus EST, clone 9f22s2.                        44   9.7    1
(AJ736474) Gallus gallus EST, clone 9f22r2.                        44   9.7    1
(AJ397054) Gallus gallus EST clone 28o4r1.                         44   9.7    1
(BU357995) 603478972F1 CSEQCHN71 Gallus gallus cDNA clone Ch...    44   9.7    1
(BU336141) 603499396F1 CSEQCHN65 Gallus gallus cDNA clone Ch...    44   9.7    1
(BU300673) 603735866F1 CSEQCHN56 Gallus gallus cDNA clone Ch...    44   9.7    1
(BU293673) 604163157F1 CSEQCHN55 Gallus gallus cDNA clone Ch...    44   9.7    1
(BU143951) 603228572F1 CSEQCHL26 Gallus gallus cDNA clone Ch...    44   9.7    1
(T94032) ye33d02.r1 Stratagene lung (#937210) Homo sapiens c...    44   9.7    1
(EX476371) EST_lsal_evj_797553 lsalevj mixed_tissue_mixed_st...    44   9.7    1
(EX476370) EST_lsal_evj_796785 lsalevj mixed_tissue_mixed_st...    44   9.7    1
(CP001055) Elusimicrobium minutum Pei191, complete genome.         44   9.7    1
(CP000563) Shewanella baltica OS155, complete genome.              44   9.7    1
(AE015928) Bacteroides thetaiotaomicron VPI-5482, complete g...    44   9.7    1
(AB120178) Streptococcus bovis adhE, pnpN genes for multifun...    44   9.7    1

>(AU267057) Dictyostelium discoideum vegetative cDNA clone:VSH193,
           5' end single read.
          Length = 483

 Score =  957 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Plus


Query: 1   atcaatttatagtgcatatttaaaacaattagaaaaaggtaaaactgaagaagatttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcaatttatagtgcatatttaaaacaattagaaaaaggtaaaactgaagaagatttgga 60


Query: 61  ggaattgggtaaagagatgacattactatgtgaagaggaggaacaattacgtttaatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggaattgggtaaagagatgacattactatgtgaagaggaggaacaattacgtttaatgat 120


Query: 121 tgaaaatacacatcaagagagaaaagaagttgaacaattaacattacaacttcaagatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaaatacacatcaagagagaaaagaagttgaacaattaacattacaacttcaagatag 180


Query: 181 aattgcaacgttgaaatcattggaagatagttattggagttgttttagtgaatttcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgcaacgttgaaatcattggaagatagttattggagttgttttagtgaatttcatta 240


Query: 241 tgaaacttttagaaataaagacgagagagatcaaaccaccgttcaaattcaatgggttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaaacttttagaaataaagacgagagagatcaaaccaccgttcaaattcaatgggttaa 300


Query: 301 tgaccatttagaaagtttaaaacaaaccaatattctcaatgatgctttccatctatggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaccatttagaaagtttaaaacaaaccaatattctcaatgatgctttccatctatggca 360


Query: 361 tgatggtcattttggtactataaattcattacgtcttggaaagttaccaagtcaaccagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgatggtcattttggtactataaattcattacgtcttggaaagttaccaagtcaaccagt 420


Query: 421 ggaatggaacgagatcaatgcagcatgggggtttagcagtatcacttttggatgcaatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaatggaacgagatcaatgcagcatgggggtttagcagtatcacttttggatgcaatgg 480


Query: 481 caa 483
           |||
Sbjct: 481 caa 483

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,083,309,104
Number of extensions: 63674353
Number of successful extensions: 5029935
Number of sequences better than 10.0: 92
Length of query: 968
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 944
Effective length of database: 97,308,875,965
Effective search space: 91859578910960
Effective search space used: 91859578910960
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12777-1 (Contig-U12777-1Q) /CSM_Contig/Contig-U12777-1Q.Seq.d
         (968 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JI9) RecName: Full=Beclin-1-like protein B; AltName: Full=Au...   313   7e-84
AM075832_1(AM075832|pid:none) Malus x domestica mRNA for beclin ...   133   6e-47
(Q9VCE1) RecName: Full=Beclin-1-like protein; AltName: Full=Auto...   119   4e-46
AB242872_1(AB242872|pid:none) Beta vulgaris bvBCN1, bvLTP-2, bvA...   133   2e-45
AM075829_1(AM075829|pid:none) Glycine max mRNA for beclin 1 prot...   126   4e-45
AY701316_1(AY701316|pid:none) Nicotiana benthamiana autophagy pr...   122   9e-45
AM075834_1(AM075834|pid:none) Solanum tuberosum mRNA for beclin ...   124   1e-44
AM075824_1(AM075824|pid:none) Hordeum vulgare mRNA for beclin 1 ...   118   3e-44
AM051363_1(AM051363|pid:none) Drosophila pseudoobscura mRNA for ...   114   4e-44
AY036610_1(AY036610|pid:none) Triticum aestivum beclin1-like pro...   117   1e-43
(Q9M367) RecName: Full=Beclin-1-like protein;  &AY039613_1(AY039...   116   9e-42
AM075830_1(AM075830|pid:none) Gossypium raimondii mRNA for becli...   124   2e-41
AC145383_20(AC145383|pid:none) Oryza sativa chromosome 3 BAC OSJ...   109   6e-40
AM075826_1(AM075826|pid:none) Saccharum officinarum partial mRNA...   111   2e-39
CR382130_492(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   103   3e-39
AM920435_1092(AM920435|pid:none) Penicillium chrysogenum Wiscons...    94   4e-32
CU329670_575(CU329670|pid:none) Schizosaccharomyces pombe chromo...    87   4e-32
CP000584_451(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    92   2e-31
CU633901_228(CU633901|pid:none) Podospora anserina genomic DNA c...    91   2e-30
AM270375_50(AM270375|pid:none) Aspergillus niger contig An16c023...    88   1e-29
AY812811_1(AY812811|pid:none) Schistosoma japonicum SJCHGC05202 ...    92   2e-27
FN357416_27(FN357416|pid:none) Schistosoma mansoni genome sequen...    92   1e-26
(O88597) RecName: Full=Beclin-1; AltName: Full=Coiled-coil myosi...   118   3e-25
AK032176_1(AK032176|pid:none) Mus musculus adult male olfactory ...   117   8e-25
AL132959_10(AL132959|pid:none) Arabidopsis thaliana DNA chromoso...   116   1e-24
(Q91XJ1) RecName: Full=Beclin-1; AltName: Full=Coiled-coil myosi...   116   1e-24
AF139131_1(AF139131|pid:none) Homo sapiens beclin 1 (BECN1) mRNA...   115   2e-24
(Q14457) RecName: Full=Beclin-1; AltName: Full=Coiled-coil myosi...   115   2e-24
AK223411_1(AK223411|pid:none) Homo sapiens mRNA for beclin 1 var...   115   2e-24
AY191013_1(AY191013|pid:none) Dictyostelium discoideum autophagy...    72   3e-24
(Q55CC5) RecName: Full=Beclin-1-like protein A; AltName: Full=Au...    72   3e-24
(Q5R878) RecName: Full=Beclin-1;  &CR859876_1(CR859876|pid:none)      114   4e-24
AK298619_1(AK298619|pid:none) Homo sapiens cDNA FLJ52719 complet...   114   5e-24
(Q5ZKS6) RecName: Full=Beclin-1;  &AJ720008_1(AJ720008|pid:none)      114   5e-24
(Q4A1L5) RecName: Full=Beclin-1;  &AM051354_1(AM051354|pid:none)      113   9e-24
(Q6GP52) RecName: Full=Beclin-1;  &BC073292_1(BC073292|pid:none)      112   3e-23
(Q4A1L3) RecName: Full=Beclin-1;  &AM051356_1(AM051356|pid:none)...   110   6e-23
AM072823_1(AM072823|pid:none) Kluyveromyces waltii mRNA for becl...    66   6e-23
AM051358_1(AM051358|pid:none) Oncorhynchus mykiss mRNA for becli...   107   5e-22
BT044718_1(BT044718|pid:none) Salmo salar clone ssal-rgf-501-310...   107   8e-22
AM051360_1(AM051360|pid:none) Takifugu rubripes mRNA for beclin ...   105   2e-21
(A5DIV5) RecName: Full=Autophagy-related protein 6; AltName: Ful...    74   1e-20
FM992691_233(FM992691|pid:none) Candida dubliniensis CD36 chromo...    79   2e-20
BC063319_1(BC063319|pid:none) Danio rerio beclin 1 (coiled-coil,...    99   3e-19
CR382137_685(CR382137|pid:none) Debaryomyces hansenii strain CBS...    72   9e-19
AE017343_275(AE017343|pid:none) Cryptococcus neoformans var. neo...    64   3e-18
AM072829_1(AM072829|pid:none) Saccharomyces kudriavzevii mRNA fo...    62   5e-17
CU565519_1(CU565519|pid:none) Zebrafish DNA sequence from clone ...    89   2e-16
(Q02948) RecName: Full=Vacuolar protein sorting-associated prote...    59   2e-15
AM072830_1(AM072830|pid:none) Saccharomyces paradoxus mRNA for b...    60   4e-15
Z95334_10(Z95334|pid:none) S.pombe chromosome I cosmid c20G8.          82   4e-14
(P87117) RecName: Full=Uncharacterized protein C20G8.10c;              82   4e-14
T29537(T29537)hypothetical protein T19E7.3 - Caenorhabditis eleg...    76   2e-12
Z95395_1(Z95395|pid:none) S.pombe chromosome I cosmid c3A12.           75   3e-12
FJ502069_1(FJ502069|pid:none) Aristichthys nobilis clone A144 be...    64   1e-08
AM072822_1(AM072822|pid:none) Clavispora lusitaniae mRNA for bec...    61   7e-08
AM072825_1(AM072825|pid:none) Saccharomyces castelli mRNA for be...    55   3e-06
AY347839_1(AY347839|pid:none) Malus x domestica clone 3-3 beclin...    41   3e-06
CP000140_3842(CP000140|pid:none) Parabacteroides distasonis ATCC...    42   0.032
CP000885_2413(CP000885|pid:none) Clostridium phytofermentans ISD...    39   0.21
DQ147983_1(DQ147983|pid:none) Macaca mulatta clone dl1_i04_t7_11...    39   0.21
AK297958_1(AK297958|pid:none) Homo sapiens cDNA FLJ54475 complet...    39   0.35
BC149013_1(BC149013|pid:none) Bos taurus syncoilin, intermediate...    38   0.46
Z81118_6(Z81118|pid:none) Caenorhabditis elegans Cosmid T10G3, c...    38   0.46
T24806(T24806)hypothetical protein T10G3.5 - Caenorhabditis eleg...    38   0.46
AY032860_1(AY032860|pid:none) Caenorhabditis elegans EEA1 mRNA, ...    38   0.46
CP001229_945(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    38   0.46
CP000382_2279(CP000382|pid:none) Clostridium novyi NT, complete ...    38   0.60
AL844506_189(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.78
CP000885_3166(CP000885|pid:none) Clostridium phytofermentans ISD...    37   1.0
CP000053_1226(CP000053|pid:none) Rickettsia felis URRWXCal2, com...    37   1.3
BX005462_1(BX005462|pid:none) Zebrafish DNA sequence from clone ...    37   1.3
CP001279_1447(CP001279|pid:none) Nautilia profundicola AmH, comp...    36   1.7
AJ000390_1(AJ000390|pid:none) Locusta migratoria mRNA for nAChR ...    36   1.7
CP000847_1088(CP000847|pid:none) Rickettsia akari str. Hartford,...    36   2.3
(Q12234) RecName: Full=GRIP domain-containing protein RUD3; AltN...    36   2.3
CR380953_99(CR380953|pid:none) Candida glabrata strain CBS138 ch...    36   2.3
A64505(A64505)P115 homolog - Methanococcus jannaschii                  36   2.3
BC163575_1(BC163575|pid:none) Danio rerio myosin VA (heavy polyp...    35   3.0
AE009951_1756(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    35   3.0
AE014185_129(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.0
AM502251_151(AM502251|pid:none) Leishmania infantum chromosome 33.     35   3.0
CP001098_562(CP001098|pid:none) Halothermothrix orenii H 168, co...    35   3.0
AJ236786_1(AJ236786|pid:none) Myzus persicae mRNA for nicotinic ...    35   3.0
(Q3IIZ7) RecName: Full=[Protein-PII] uridylyltransferase;       ...    35   3.0
BC077128_1(BC077128|pid:none) Danio rerio homer homolog 1 (Droso...    35   3.9
BA000002_724(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet...    35   3.9
AB375440_2(AB375440|pid:none) Pseudomonas aeruginosa plasmid Rms...    35   3.9
CR626903_2(CR626903|pid:none) Zebrafish DNA sequence from clone ...    35   3.9
CR626903_1(CR626903|pid:none) Zebrafish DNA sequence from clone ...    35   3.9
AE014186_87(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.9
B72704(B72704)hypothetical protein APE1049 - Aeropyrum pernix (s...    35   3.9
AB028975_1(AB028975|pid:none) Homo sapiens KIAA1052 mRNA for KIA...    35   5.1
CU638744_112(CU638744|pid:none) Podospora anserina genomic DNA c...    35   5.1
AP007155_376(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    35   5.1
AL137265_1(AL137265|pid:none) Homo sapiens mRNA; cDNA DKFZp434O2...    35   5.1
BC076678_1(BC076678|pid:none) Xenopus tropicalis myosin, heavy p...    35   5.1
CP001185_924(CP001185|pid:none) Thermosipho africanus TCF52B, co...    35   5.1
BT037687_1(BT037687|pid:none) Zea mays full-length cDNA clone ZM...    34   6.6
AP009377_80(AP009377|pid:none) Cryptomeria japonica chloroplast ...    34   6.6
AP010966_79(AP010966|pid:none) Cryptomeria japonica chloroplast ...    34   6.6
T47237(T47237) myosin II heavy chain [imported] - Naegleria fowl...    34   6.6
AB280021_1(AB280021|pid:none) Molgula tectiformis Mt-tropomyosin...    34   6.6
(Q9LME2) RecName: Full=Synaptonemal complex protein 1; AltName: ...    34   6.6
EU143794_1(EU143794|pid:none) Bombyx mori nicotinic acetylcholin...    34   6.6
(P48785) RecName: Full=Pathogenesis-related homeodomain protein;...    34   6.6
DQ026032_1(DQ026032|pid:none) Apis mellifera nicotinic acetylcho...    34   6.6
BC149423_1(BC149423|pid:none) Bos taurus MORC family CW-type zin...    34   6.6
CP000058_908(CP000058|pid:none) Pseudomonas syringae pv. phaseol...    34   6.6
AB093257_1(AB093257|pid:none) Mus musculus mRNA for mKIAA0665 pr...    34   8.7
FM992691_625(FM992691|pid:none) Candida dubliniensis CD36 chromo...    34   8.7
CR382125_524(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    34   8.7
AB058704_1(AB058704|pid:none) Homo sapiens mRNA for KIAA1801 pro...    34   8.7
BC023364_1(BC023364|pid:none) Mus musculus RAB11 family interact...    34   8.7
(P25386) RecName: Full=Intracellular protein transport protein U...    34   8.7
X54378_1(X54378|pid:none) S.cerevisiae gene for Uso1 protein, in...    34   8.7
L03188_1(L03188|pid:none) Saccharomyces cerevisiae integrin anal...    34   8.7
BC093530_1(BC093530|pid:none) Xenopus laevis hypothetical protei...    34   8.7
AK022365_1(AK022365|pid:none) Homo sapiens cDNA FLJ12303 fis, cl...    34   8.7

>(Q54JI9) RecName: Full=Beclin-1-like protein B; AltName:
           Full=Autophagy-related protein 6B;
          Length = 855

 Score =  313 bits (801), Expect = 7e-84
 Identities = 150/152 (98%), Positives = 151/152 (99%)
 Frame = +2

Query: 2   SIYSAYLKQLEKGKTEEDLEELGKEMTLLCEEEEQLRLMIENTHQERKEVEQLTLQLQDR 181
           SIYSAYLKQLEKGKTEEDLEELGKEMTLLCEEEEQLRLMIENTHQERKEVEQLTLQLQDR
Sbjct: 528 SIYSAYLKQLEKGKTEEDLEELGKEMTLLCEEEEQLRLMIENTHQERKEVEQLTLQLQDR 587

Query: 182 IATLKSLEDSYWSCFSEFHYETFRNKDERDQTTVQIQWVNDHLESLKQTNILNDAFHLWH 361
           IATLKSLEDSYWSCFSEFHYETFRNKDERDQTTVQIQWVNDHLESLKQTNILNDAFHLWH
Sbjct: 588 IATLKSLEDSYWSCFSEFHYETFRNKDERDQTTVQIQWVNDHLESLKQTNILNDAFHLWH 647

Query: 362 DGHFGTINSLRLGKLPSQPVEWNEINAAWGFS 457
           DGHFGTINSLRLGKLPSQPVEWNEINAAWG +
Sbjct: 648 DGHFGTINSLRLGKLPSQPVEWNEINAAWGLA 679

 Score =  266 bits (680), Expect = 8e-70
 Identities = 130/149 (87%), Positives = 132/149 (88%)
 Frame = +3

Query: 417  QWNGTRSMQHGGLAVSLLDAMAXXXXXXXXXXTLVPNGSCSRVDKRDVDPPLAYELYGTN 596
            +WN   +    GLAVSLLDAMA          TLVPNGSCSRVDKRDVDPPLAYELYGTN
Sbjct: 668  EWNEINAAW--GLAVSLLDAMAKKLKFKFQQFTLVPNGSCSRVDKRDVDPPLAYELYGTN 725

Query: 597  DISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPYKIDKEYIGGMCIKLQFTN 776
            DISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPYKIDKEYIGGMCIKLQFTN
Sbjct: 726  DISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPYKIDKEYIGGMCIKLQFTN 785

Query: 777  DDTWTKSLKFMLTNLKWILIWIVKNETLT 863
            DDTWTKSLKFMLTNLKWILIWIVKNETLT
Sbjct: 786  DDTWTKSLKFMLTNLKWILIWIVKNETLT 814

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,443,005,543
Number of extensions: 29422621
Number of successful extensions: 85335
Number of sequences better than 10.0: 119
Number of HSP's gapped: 84904
Number of HSP's successfully gapped: 173
Length of query: 322
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 194
Effective length of database: 636,901,312
Effective search space: 123558854528
Effective search space used: 123558854528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for Contig-U12777-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0