Contig-U12772-1 |
Contig ID |
Contig-U12772-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
534 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
1355954 |
End point |
1355445 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U12772 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 3 |
Homology vs DNA |
Query= Contig-U12772-1 (Contig-U12772-1Q) /CSM_Contig/Contig-U12772-1Q.Seq.d (534 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ336808) Dictyostelium discoideum cDNA clone:dda55p02, 5' ... 486 0.0 3 (AC115584) Dictyostelium discoideum chromosome 2 map complem... 44 0.21 4 (AC193814) Trichinella spiralis BAC clone TS195-31H12 from c... 48 0.32 1 (EJ412751) 1093012160974 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.54 2 (AC142555) Pan troglodytes clone CH251-526K6, WORKING DRAFT ... 36 0.83 4 (AF310892) Dictyostelium discoideum citrate synthase (gltA) ... 44 0.96 2 (BJ336901) Dictyostelium discoideum cDNA clone:dda55f14, 5' ... 30 1.0 3 (BJ364114) Dictyostelium discoideum cDNA clone:ddc30c04, 5' ... 30 1.2 3 (CU915378) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1 (AC223189) Bos taurus clone CH240-426L19, WORKING DRAFT SEQU... 46 1.3 1 (AC223092) Bos taurus clone CH240-429J8, WORKING DRAFT SEQUE... 46 1.3 1 (BB938390) Trifolium pratense cDNA clone:RCC11638. 46 1.3 1 (BB932975) Trifolium pratense cDNA clone:RCC05036. 46 1.3 1 (FE384176) CBNT2899.fwd CBNT_Daphnia_pulex_Chosen_One_Librar... 46 1.3 1 (FE384175) CBNT2899.rev CBNT_Daphnia_pulex_Chosen_One_Librar... 46 1.3 1 (FE291143) CANI491.fwd CANI_Daphnia_pulex_Log50_Library_18 D... 46 1.3 1 (FE291142) CANI491.rev CANI_Daphnia_pulex_Log50_Library_18 D... 46 1.3 1 (CP000422) Pediococcus pentosaceus ATCC 25745, complete genome. 46 1.3 1 (BJ393053) Dictyostelium discoideum cDNA clone:dds29m23, 5' ... 30 1.3 3 (BJ392061) Dictyostelium discoideum cDNA clone:dds26a11, 5' ... 30 1.5 3 (AY484462) Dictyostelium discoideum kinesin family member 8 ... 34 2.0 3 (AM200038) Paracentrotus lividus EST, clone MPMGp1172C0649Q,... 40 2.0 2 (AM557944) Paracentrotus lividus EST, clone MPMGp1172K1264Q,... 40 2.4 2 (EB542884) AGENCOURT_52936399 D. erecta EST Drosophila erect... 34 3.3 2 (EB542518) AGENCOURT_52937142 D. erecta EST Drosophila erect... 34 3.3 2 (EB552348) AGENCOURT_52953869 D. erecta EST Drosophila erect... 34 3.3 2 (EB534627) AGENCOURT_52963658 D. erecta EST Drosophila erect... 34 3.3 2 (BJ370131) Dictyostelium discoideum cDNA clone:ddc53d02, 5' ... 30 3.8 3 (AP003431) Oryza sativa Japonica Group genomic DNA, chromoso... 42 4.2 3 (AC115305) Mus musculus BAC clone RP24-372L1 from 18, comple... 42 5.0 2 (L00766) Human chromosome 4 sequence-tagged site STS4-252, s... 44 5.0 1 (G33314) human STS SHGC-24203, sequence tagged site. 44 5.0 1 (AL928926) Mouse DNA sequence from clone RP23-443G7 on chrom... 44 5.0 1 (AC097510) Homo sapiens BAC clone RP11-390C19 from 4, comple... 44 5.0 1 (AC128578) Rattus norvegicus clone CH230-154H20, WORKING DRA... 44 5.0 1 (AC126631) Rattus norvegicus clone CH230-205O19, *** SEQUENC... 44 5.0 1 (CT737204) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.0 1 (BH031051) RPCI-24-341I12.TJ RPCI-24 Mus musculus genomic cl... 44 5.0 1 (AQ602461) HS_2128_A1_E10_T7C CIT Approved Human Genomic Spe... 44 5.0 1 (DX372141) 3B_036_H03_FM1 Triticum aestivum chromosome 3B-sp... 44 5.0 1 (DE103053) Oryzias latipes DNA, clone: ola1-136N11.F, genomi... 44 5.0 1 (DE102522) Oryzias latipes DNA, clone: ola1-136B08.R, genomi... 44 5.0 1 (ES846463) UFL_133_63 Cotton fiber 0-10 day post anthesis Go... 44 5.0 1 (DW515054) GH_TMIRS_187_G10_F Cotton Normalized Library dT p... 44 5.0 1 (DV141323) CV03128A1B08.f1 CV03-normalized library Euphorbia... 44 5.0 1 (DT467297) GH_CHX20D03.r GH_CHX Gossypium hirsutum cDNA clon... 44 5.0 1 (DT467296) GH_CHX20D03.f GH_CHX Gossypium hirsutum cDNA clon... 44 5.0 1 (DT462097) GH_CHX08F07.x GH_CHX Gossypium hirsutum cDNA clon... 44 5.0 1 (AU074278) Dictyostelium discoideum slug cDNA, clone SSK211. 44 5.0 1 (CV559928) UI-M-HZ0-ctl-a-21-0-UI.r1 NIH_BMAP_HZ0 Mus muscul... 44 5.0 1 (BQ594867) E012262-024-024-K05-SP6 MPIZ-ADIS-024-developing ... 44 5.0 1 (BQ594782) E012441-024-024-K05-SP6 MPIZ-ADIS-024-developing ... 44 5.0 1 (BQ411988) GA__Ed0044G04r Gossypium arboreum 7-10 dpa fiber ... 44 5.0 1 (BP527626) Nicotiana tabacum cDNA, clone: BY12429, primer: M... 44 5.0 1 (BJ328719) Dictyostelium discoideum cDNA clone:dda29o03, 5' ... 44 5.0 1 (FG478188) 020918KALA009448HT (KALA) Dormant kiwifruit buds ... 44 5.0 1 (EY729487) CS00-C3-704-017-F01-CT.F Sweet orange fruit, deve... 44 5.0 1 (AV916299) Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDN... 44 5.0 1 (AE017263) Mesoplasma florum L1 complete genome. 44 5.0 1 (AC074335) Mus Musculus Strain C57BL6/J Chromosome 18 BAC, R... 42 6.3 2 (AC101998) Mus musculus chromosome 10 clone RP24-449N22 map ... 38 6.5 2 (AF525505) Fusobacterium nucleatum outer membrane protein ge... 42 6.7 2 (DV738894) ID0AFF12AA02CM1 ID0AFF Acyrthosiphon pisum cDNA c... 36 6.8 2 (AC136273) Rattus norvegicus clone CH230-446C17, *** SEQUENC... 36 7.5 4 (AL110292) Human chromosome 14 DNA sequence BAC R-384J4 of l... 40 7.5 5 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 7.7 5 (CC632482) OGLAV23TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 8.0 2 (CJ467103) Macaca fascicularis mRNA, clone: QnpA-16545, 5' e... 36 8.2 2 (CJ435270) Macaca fascicularis mRNA, clone: QccE-12305, 5' e... 38 8.5 2 (DT739843) EST1173692 Aquilegia cDNA library Aquilegia formo... 34 8.8 2 (ET034388) MUGQ_CH252P337C09Sp6_CP625_045 CHORI-252 Vervet M... 36 8.8 2 (AC206539) Pongo abelii BAC clone CH276-55H24 from chromosom... 32 8.9 2 (CC632472) OGLAV23TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 9.0 2 (AC212172) Pongo abelii chromosome UNKNOWN clone CH276-207B5... 32 9.0 2 (DR914492) EST1106031 Aquilegia cDNA library Aquilegia formo... 34 9.2 2 (DR936380) EST1127919 Aquilegia cDNA library Aquilegia formo... 34 9.2 2 (CC624734) OGUKR53TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 9.3 2 (CC624739) OGUKR53TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 9.6 2 (AL408673) T7 end of clone AV0AA010A09 of library AV0AA from... 40 9.8 2
>(BJ336808) Dictyostelium discoideum cDNA clone:dda55p02, 5' end, single read. Length = 525
Score = 486 bits (245), Expect(3) = 0.0 Identities = 245/245 (100%) Strand = Plus / Plus
Query: 118 cactgaaaaggataacgaagatgatgaaactgatttagtatttgatcaaaaagttagcga 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 cactgaaaaggataacgaagatgatgaaactgatttagtatttgatcaaaaagttagcga 177
Query: 178 tacaagtagatttaaagttagaaatcaaaagaaagattgggatgatgaatttgataattt 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 tacaagtagatttaaagttagaaatcaaaagaaagattgggatgatgaatttgataattt 237
Query: 238 cggttcaagtggtgatgaatctgaatcttcaacagcaacaacaaatgcagcaataaattc 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 cggttcaagtggtgatgaatctgaatcttcaacagcaacaacaaatgcagcaataaattc 297
Query: 298 aaatattgcaaagaaaatactaccatcaaatagaatcattagatatagtagtagtggtca 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 aaatattgcaaagaaaatactaccatcaaatagaatcattagatatagtagtagtggtca 357
Query: 358 actta 362 ||||| Sbjct: 358 actta 362
Score = 192 bits (97), Expect(3) = 0.0 Identities = 97/97 (100%) Strand = Plus / Plus
Query: 429 cattatcgccatcagaaatgaaattaaaagttaaagaaacttcagaagaatgggatacag 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 cattatcgccatcagaaatgaaattaaaagttaaagaaacttcagaagaatgggatacag 488
Query: 489 aatttgaagaatcgtttgatacaatatcatggtcaga 525 ||||||||||||||||||||||||||||||||||||| Sbjct: 489 aatttgaagaatcgtttgatacaatatcatggtcaga 525
Score = 30.2 bits (15), Expect(3) = 0.0 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 1 ctgttggcctactgg 15 ||||||||||||||| Sbjct: 1 ctgttggcctactgg 15
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 456,202,155 Number of extensions: 28787099 Number of successful extensions: 3061589 Number of sequences better than 10.0: 81 Length of query: 534 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 511 Effective length of database: 93,106,754,628 Effective search space: 47577551614908 Effective search space used: 47577551614908 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |