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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Contig-U12768-1
Contig ID Contig-U12768-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Contig-U12768-1Q.Seq.d
NNNNNNNNNNGTTTGNTGATTTNGATCCNAAACCNTTNNTTTGNAAAACT
GNTGCTGNTGTTTCAGTTGGNGTTGCTGTTGGNGNTGCTGTTGGTGGNGC
NANTGCNCTTGGNGTNTTTATTTTTGNTGGTAAAAAAGGTTNTGNCTACT
GGAAANCNAGTCAAGGNGTTNCNANGGCCNCATNAAANGCCNATCCCCTT
TANGAAANCNATCCNTCAGGNGGNGAAAATCCNATTTATNCTAGCCCCNA
TTANCNGTAANAACTTTTNAAAATCCATNAAAACCCCCNACTCAAACCCC
Gap no gap
Contig length 300
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U12768
List of clone(s) 

est1=AHM280Z,1,291
Translated Amino Acid sequence 
XXXXLXIXIXNXXFXKLXLXFQLXLLLXXLLVXXXXLXXLFLXVKKVXXTGXXVKXXXXP
HXXPIPFXKXIXQXXKIXFXLAPIXXXNFXKSXKTPXSNP
Translated Amino Acid sequence (All Frames) 
Frame A:
XXXXLXIXIXNXXFXKLXLXFQLXLLLXXLLVXXXXLXXLFLXVKKVXXTGXXVKXXXXP
HXXPIPFXKXIXQXXKIXFXLAPIXXXNFXKSXKTPXSNP


Frame B:
xxxvx*fxsxtxxlxnxcxcfswxccwxccwwxxcxwxxyfxw*krxxllexxsrxxxgx
xkxxsplxxxsxrxxksxlx*pxlxvxtfxnpxkpptqt


Frame C:
xxxfxdxdpkpxxxktxaxvsvgvavgxavggaxalgvfifxgkkgxxywkxsqgvxxax
xxaxplxexxpsggenpiyxspxxx*xlxkihxnpxlkp
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12768-1 (Contig-U12768-1Q)
/CSM_Contig/Contig-U12768-1Q.Seq.d
         (300 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Conti...   276  1e-74
Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Conti...   186  9e-48
Contig-U13159-1 (Contig-U13159-1Q) /CSM_Contig/Conti...   155  3e-38
Contig-U13016-1 (Contig-U13016-1Q) /CSM_Contig/Conti...   109  2e-24
Contig-U12623-1 (Contig-U12623-1Q) /CSM_Contig/Conti...   100  2e-21
Contig-U14290-1 (Contig-U14290-1Q) /CSM_Contig/Conti...    96  3e-20
Contig-U12652-1 (Contig-U12652-1Q) /CSM_Contig/Conti...    92  4e-19
Contig-U14373-1 (Contig-U14373-1Q) /CSM_Contig/Conti...    84  1e-16
Contig-U12668-1 (Contig-U12668-1Q) /CSM_Contig/Conti...    84  1e-16
Contig-U14013-1 (Contig-U14013-1Q) /CSM_Contig/Conti...    66  2e-11

>Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Contig-U12768-1Q.Seq.d
          Length = 300

 Score =  276 bits (139), Expect = 1e-74
 Identities = 256/256 (100%)
 Strand = Plus / Plus

                                                                       
Query: 45  aaaactgntgctgntgtttcagttggngttgctgttggngntgctgttggtggngcnant 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  aaaactgntgctgntgtttcagttggngttgctgttggngntgctgttggtggngcnant 104

                                                                       
Query: 105 gcncttggngtntttatttttgntggtaaaaaaggttntgnctactggaaancnagtcaa 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gcncttggngtntttatttttgntggtaaaaaaggttntgnctactggaaancnagtcaa 164

                                                                       
Query: 165 ggngttncnanggccncatnaaangccnatcccctttangaaancnatccntcaggnggn 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ggngttncnanggccncatnaaangccnatcccctttangaaancnatccntcaggnggn 224

                                                                       
Query: 225 gaaaatccnatttatnctagccccnattancngtaanaacttttnaaaatccatnaaaac 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gaaaatccnatttatnctagccccnattancngtaanaacttttnaaaatccatnaaaac 284

                           
Query: 285 ccccnactcaaacccc 300
           ||||||||||||||||
Sbjct: 285 ccccnactcaaacccc 300


>Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Contig-U12766-1Q.Seq.d
          Length = 330

 Score =  186 bits (94), Expect = 9e-48
 Identities = 234/256 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  aaaactgntgctgntgtttcagttggngttgctgttggngntgctgttggtggngcnant 104
           |||||||||||||||| |||| |||||| ||||||||||||||||||||| || ||||||
Sbjct: 39  aaaactgntgctgntgnttcanttggngntgctgttggngntgctgttggnggggcnant 98

                                                                       
Query: 105 gcncttggngtntttatttttgntggtaaaaaaggttntgnctactggaaancnagtcaa 164
           || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||
Sbjct: 99  gcccttggggtntttatttttgntggnaaaaaaggttntgnctactggaaancnanncaa 158

                                                                       
Query: 165 ggngttncnanggccncatnaaangccnatcccctttangaaancnatccntcaggnggn 224
           |||| |||||||||| | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 159 ggngntncnanggccccntcaaangccnatcccctttangaaancnatccntcnggnggn 218

                                                                       
Query: 225 gaaaatccnatttatnctagccccnattancngtaanaacttttnaaaatccatnaaaac 284
           ||||| ||||||| |||||||||||||||||||| ||||||||| |||| || | |||||
Sbjct: 219 gaaaanccnatttntnctagccccnattancngtnanaacttttgaaaanccntaaaaac 278

                           
Query: 285 ccccnactcaaacccc 300
           ||||||||||||||||
Sbjct: 279 ccccnactcaaacccc 294


>Contig-U13159-1 (Contig-U13159-1Q) /CSM_Contig/Contig-U13159-1Q.Seq.d
          Length = 268

 Score =  155 bits (78), Expect = 3e-38
 Identities = 190/204 (93%)
 Strand = Plus / Plus

                                                                       
Query: 45  aaaactgntgctgntgtttcagttggngttgctgttggngntgctgttggtggngcnant 104
           ||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||
Sbjct: 63  aaaactgntgctgntgtttcanttggngntgctgttggngntgctgttggnggggcnant 122

                                                                       
Query: 105 gcncttggngtntttatttttgntggtaaaaaaggttntgnctactggaaancnagtcaa 164
           |||||||| ||||||| ||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct: 123 gcncttggggtntttanttttggtggnaaaaaaggttntgnctactggaaancaagtcaa 182

                                                                       
Query: 165 ggngttncnanggccncatnaaangccnatcccctttangaaancnatccntcaggnggn 224
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ggngntncnanggccncntnaaangccnatcccctttangaaancnatccntcaggnggn 242

                                   
Query: 225 gaaaatccnatttatnctagcccc 248
           |||||  |||||| ||||||||||
Sbjct: 243 gaaaanncnatttntnctagcccc 266


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 184
Number of Sequences: 6905
Number of extensions: 184
Number of successful extensions: 56
Number of sequences better than 10.0: 13
length of query: 300
length of database: 5,674,871
effective HSP length: 15
effective length of query: 285
effective length of database: 5,571,296
effective search space: 1587819360
effective search space used: 1587819360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Contig-U12768-1Q.Seq.d
         (300 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ355166) Dictyostelium discoideum cDNA clone:dda55o20, 3' ...   202   1e-70  2
(BJ349854) Dictyostelium discoideum cDNA clone:dda37i20, 3' ...   198   2e-69  2
(BJ349050) Dictyostelium discoideum cDNA clone:dda35p06, 3' ...   192   1e-67  2
(BJ357269) Dictyostelium discoideum cDNA clone:dda63a06, 3' ...   192   1e-67  2
(BJ349662) Dictyostelium discoideum cDNA clone:dda37b07, 3' ...   192   1e-67  2
(BJ353764) Dictyostelium discoideum cDNA clone:dda51i07, 3' ...   192   1e-67  2
(BJ354513) Dictyostelium discoideum cDNA clone:dda53i23, 3' ...   192   1e-67  2
(BJ347982) Dictyostelium discoideum cDNA clone:dda31f23, 3' ...   192   1e-67  2
(BJ349217) Dictyostelium discoideum cDNA clone:dda35d19, 3' ...   192   1e-67  2
(BJ354200) Dictyostelium discoideum cDNA clone:dda52j22, 3' ...   192   1e-67  2
(BJ351296) Dictyostelium discoideum cDNA clone:dda42o18, 3' ...   186   8e-66  2
(BJ349154) Dictyostelium discoideum cDNA clone:dda35f17, 3' ...   186   8e-66  2
(BJ356617) Dictyostelium discoideum cDNA clone:dda60k20, 3' ...   186   8e-66  2
(BJ348878) Dictyostelium discoideum cDNA clone:dda34l18, 3' ...   186   8e-66  2
(BJ354852) Dictyostelium discoideum cDNA clone:dda54p23, 3' ...   186   8e-66  2
(BJ355132) Dictyostelium discoideum cDNA clone:dda55i19, 3' ...   186   8e-66  2
(BJ355449) Dictyostelium discoideum cDNA clone:dda57j06, 3' ...   186   8e-66  2
(BJ348661) Dictyostelium discoideum cDNA clone:dda33n20, 3' ...   192   8e-66  2
(BJ350202) Dictyostelium discoideum cDNA clone:dda39g05, 3' ...   186   8e-66  2
(BJ384139) Dictyostelium discoideum cDNA clone:ddc48k11, 3' ...   186   8e-66  2
(BJ383524) Dictyostelium discoideum cDNA clone:ddc53g12, 3' ...   192   8e-66  2
(BJ351473) Dictyostelium discoideum cDNA clone:dda43h14, 3' ...   186   8e-66  2
(BJ351586) Dictyostelium discoideum cDNA clone:dda43p21, 3' ...   186   8e-66  2
(BJ348147) Dictyostelium discoideum cDNA clone:dda32g10, 3' ...   186   3e-65  2
(BJ354405) Dictyostelium discoideum cDNA clone:dda53c15, 3' ...   192   3e-65  2
(BJ355096) Dictyostelium discoideum cDNA clone:dda55a23, 3' ...   190   3e-65  2
(BJ355277) Dictyostelium discoideum cDNA clone:dda56e10, 3' ...   190   3e-65  2
(BJ404578) Dictyostelium discoideum cDNA clone:dds29a02, 3' ...   184   3e-65  2
(BJ342509) Dictyostelium discoideum cDNA clone:dda14i11, 3' ...   184   1e-64  2
(AU034939) Dictyostelium discoideum slug cDNA, clone SLE370.      182   5e-64  2
(C94367) Dictyostelium discoideum slug cDNA, clone SSK891.        182   5e-64  2
(AU033416) Dictyostelium discoideum slug cDNA, clone SLA743.      182   5e-64  2
(AU033415) Dictyostelium discoideum slug cDNA, clone SLA742.      182   5e-64  2
(BJ349933) Dictyostelium discoideum cDNA clone:dda38j05, 3' ...   186   5e-64  2
(BJ348483) Dictyostelium discoideum cDNA clone:dda33j11, 3' ...   186   5e-64  2
(C93110) Dictyostelium discoideum slug cDNA, clone SSM566.        182   5e-64  2
(BJ347868) Dictyostelium discoideum cDNA clone:dda31o07, 3' ...   186   5e-64  2
(AU038832) Dictyostelium discoideum slug cDNA, clone SSL537.      182   5e-64  2
(BJ383140) Dictyostelium discoideum cDNA clone:ddc52b04, 3' ...   180   5e-64  2
(BJ351690) Dictyostelium discoideum cDNA clone:dda44e12, 3' ...   192   5e-64  2
(AU039490) Dictyostelium discoideum slug cDNA, clone SLH882.      182   5e-64  2
(AU033699) Dictyostelium discoideum slug cDNA, clone SLB330.      182   5e-64  2
(BJ356052) Dictyostelium discoideum cDNA clone:dda59g05, 3' ...   186   2e-63  2
(BJ349366) Dictyostelium discoideum cDNA clone:dda36c12, 3' ...   186   3e-62  2
(BJ350861) Dictyostelium discoideum cDNA clone:dda41b12, 3' ...   186   3e-62  2
(BJ385679) Dictyostelium discoideum cDNA clone:ddc55d24, 3' ...   186   3e-62  2
(BJ383525) Dictyostelium discoideum cDNA clone:ddc53h09, 3' ...   192   3e-62  2
(BJ349935) Dictyostelium discoideum cDNA clone:dda38k03, 3' ...   180   3e-62  2
(BJ356304) Dictyostelium discoideum cDNA clone:dda59l20, 3' ...   190   1e-61  2
(BJ349005) Dictyostelium discoideum cDNA clone:dda35f04, 3' ...   178   7e-60  2
(BJ356697) Dictyostelium discoideum cDNA clone:dda61m01, 3' ...   168   7e-60  2
(BJ350891) Dictyostelium discoideum cDNA clone:dda41h11, 3' ...   186   3e-59  2
(BJ350200) Dictyostelium discoideum cDNA clone:dda39g02, 3' ...   151   1e-51  2
(BJ353026) Dictyostelium discoideum cDNA clone:dda48p18, 3' ...   182   1e-49  2
(BJ409767) Dictyostelium discoideum cDNA clone:dds42n05, 3' ...   157   3e-49  2
(BJ350736) Dictyostelium discoideum cDNA clone:dda40i20, 3' ...   149   3e-49  2
(BJ401594) Dictyostelium discoideum cDNA clone:dds23d23, 3' ...   192   5e-45  1
(BJ400725) Dictyostelium discoideum cDNA clone:dds14b15, 3' ...   192   5e-45  1
(BJ381587) Dictyostelium discoideum cDNA clone:ddc42b03, 3' ...   192   5e-45  1
(BJ381367) Dictyostelium discoideum cDNA clone:ddc41e12, 3' ...   192   5e-45  1
(BJ349833) Dictyostelium discoideum cDNA clone:dda37e21, 3' ...   192   5e-45  1
(BJ343144) Dictyostelium discoideum cDNA clone:dda22m03, 3' ...   192   5e-45  1
(BJ355112) Dictyostelium discoideum cDNA clone:dda55e19, 3' ...   143   7e-44  2
(AU034927) Dictyostelium discoideum slug cDNA, clone SLE350.      115   7e-44  2
(BJ350791) Dictyostelium discoideum cDNA clone:dda41e02, 3' ...   188   7e-44  1
(BJ408514) Dictyostelium discoideum cDNA clone:dds46g04, 3' ...   186   3e-43  1
(BJ402751) Dictyostelium discoideum cDNA clone:dds17l22, 3' ...   186   3e-43  1
(BJ400492) Dictyostelium discoideum cDNA clone:dds13b16, 3' ...   186   3e-43  1
(BJ398435) Dictyostelium discoideum cDNA clone:dds12n12, 3' ...   186   3e-43  1
(BJ385300) Dictyostelium discoideum cDNA clone:ddc54b13, 3' ...   186   3e-43  1
(BJ378370) Dictyostelium discoideum cDNA clone:ddc31p15, 3' ...   186   3e-43  1
(BJ377683) Dictyostelium discoideum cDNA clone:ddc25l08, 3' ...   186   3e-43  1
(BJ376250) Dictyostelium discoideum cDNA clone:ddc21c19, 3' ...   186   3e-43  1
(BJ358089) Dictyostelium discoideum cDNA clone:dda65p16, 3' ...   186   3e-43  1
(BJ357516) Dictyostelium discoideum cDNA clone:dda63e22, 3' ...   186   3e-43  1
(BJ357106) Dictyostelium discoideum cDNA clone:dda62p11, 3' ...   186   3e-43  1
(BJ356719) Dictyostelium discoideum cDNA clone:dda61a12, 3' ...   186   3e-43  1
(BJ355370) Dictyostelium discoideum cDNA clone:dda56h14, 3' ...   186   3e-43  1
(BJ355236) Dictyostelium discoideum cDNA clone:dda56l05, 3' ...   186   3e-43  1
(BJ355227) Dictyostelium discoideum cDNA clone:dda56k02, 3' ...   186   3e-43  1
(BJ354843) Dictyostelium discoideum cDNA clone:dda54n22, 3' ...   186   3e-43  1
(BJ354763) Dictyostelium discoideum cDNA clone:dda54m14, 3' ...   186   3e-43  1
(BJ354745) Dictyostelium discoideum cDNA clone:dda54i16, 3' ...   186   3e-43  1
(BJ354671) Dictyostelium discoideum cDNA clone:dda54j12, 3' ...   186   3e-43  1
(BJ354141) Dictyostelium discoideum cDNA clone:dda52l17, 3' ...   186   3e-43  1
(BJ353988) Dictyostelium discoideum cDNA clone:dda52l01, 3' ...   186   3e-43  1
(BJ353723) Dictyostelium discoideum cDNA clone:dda51p03, 3' ...   186   3e-43  1
(BJ353127) Dictyostelium discoideum cDNA clone:dda49g02, 3' ...   186   3e-43  1
(BJ351927) Dictyostelium discoideum cDNA clone:dda45e05, 3' ...   186   3e-43  1
(BJ349444) Dictyostelium discoideum cDNA clone:dda36c16, 3' ...   186   3e-43  1
(BJ349255) Dictyostelium discoideum cDNA clone:dda35l20, 3' ...   186   3e-43  1
(BJ348266) Dictyostelium discoideum cDNA clone:dda32o13, 3' ...   186   3e-43  1
(BJ344622) Dictyostelium discoideum cDNA clone:dda19n24, 3' ...   186   3e-43  1
(BJ342579) Dictyostelium discoideum cDNA clone:dda14n16, 3' ...   186   3e-43  1
(BJ408298) Dictyostelium discoideum cDNA clone:dds45i10, 3' ...   184   1e-42  1
(BJ401899) Dictyostelium discoideum cDNA clone:dds19c22, 3' ...   184   1e-42  1
(BJ383148) Dictyostelium discoideum cDNA clone:ddc52c06, 3' ...   184   1e-42  1
(BJ383124) Dictyostelium discoideum cDNA clone:ddc46n23, 3' ...   184   1e-42  1
(BJ382480) Dictyostelium discoideum cDNA clone:ddc44j24, 3' ...   184   1e-42  1
(BJ382339) Dictyostelium discoideum cDNA clone:ddc44m12, 3' ...   184   1e-42  1

>(BJ355166) Dictyostelium discoideum cDNA clone:dda55o20, 3' end,
           single read.
          Length = 291

 Score =  202 bits (102), Expect(2) = 1e-70
 Identities = 207/207 (100%)
 Strand = Plus / Minus


Query: 12  tttgntgatttngatccnaaaccnttnntttgnaaaactgntgctgntgtttcagttggn 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttgntgatttngatccnaaaccnttnntttgnaaaactgntgctgntgtttcagttggn 231


Query: 72  gttgctgttggngntgctgttggtggngcnantgcncttggngtntttatttttgntggt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gttgctgttggngntgctgttggtggngcnantgcncttggngtntttatttttgntggt 171


Query: 132 aaaaaaggttntgnctactggaaancnagtcaaggngttncnanggccncatnaaangcc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aaaaaaggttntgnctactggaaancnagtcaaggngttncnanggccncatnaaangcc 111


Query: 192 natcccctttangaaancnatccntca 218
           |||||||||||||||||||||||||||
Sbjct: 110 natcccctttangaaancnatccntca 84

 Score = 95.6 bits (48), Expect(2) = 1e-70
 Identities = 75/75 (100%)
 Strand = Plus / Minus


Query: 226 aaaatccnatttatnctagccccnattancngtaanaacttttnaaaatccatnaaaacc 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  aaaatccnatttatnctagccccnattancngtaanaacttttnaaaatccatnaaaacc 17


Query: 286 cccnactcaaacccc 300
           |||||||||||||||
Sbjct: 16  cccnactcaaacccc 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 68,708,841
Number of extensions: 3557158
Number of successful extensions: 21670
Number of sequences better than 10.0: 259
Length of query: 300
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 277
Effective length of database: 93,106,754,628
Effective search space: 25790571031956
Effective search space used: 25790571031956
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Contig-U12768-1Q.Seq.d
         (300 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 49   5e-05
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    45   8e-04
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 40   0.019
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    40   0.025
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 32   5.3
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    32   5.3

>(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;
          Length = 733

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 28/77 (36%), Positives = 31/77 (40%)
 Frame = +3

Query: 18  DXDPKPXXXKTXXXXXXXXXXXXXXXXXXXXXXFIFXGKKGXXYWKXSQGVXXAXXXAXP 197
           D DPKP   +                        IF GKKG   WK SQG   A   A P
Sbjct: 656 DYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANP 715

Query: 198 LXEXXPSGGENPIYXSP 248
           L     +GGENP+Y SP
Sbjct: 716 LYTQSSNGGENPLYNSP 732

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 147,578,296
Number of extensions: 4592241
Number of successful extensions: 547
Number of sequences better than 10.0: 6
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 6
Length of query: 100
Length of database: 1,051,180,864
Length adjustment: 69
Effective length of query: 31
Effective length of database: 827,858,293
Effective search space: 25663607083
Effective search space used: 25663607083
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.81  gvh: 0.72  alm: 0.32  top: 0.60  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.12  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12768-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0