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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Contig-U12766-1
Contig ID Contig-U12766-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Contig-U12766-1Q.Seq.d
NNNNNNNNNNTGATTTNGATCCNAAACCNTTNNTTTGNAAAACTGNTGCT
GNTGNTTCANTTGGNGNTGCTGTTGGNGNTGCTGTTGGNGGGGCNANTGC
CCTTGGGGTNTTTATTTTTGNTGGNAAAAAAGGTTNTGNCTACTGGAAAN
CNANNCAAGGNGNTNCNANGGCCCCNTCAAANGCCNATCCCCTTTANGAA
ANCNATCCNTCNGGNGGNGAAAANCCNATTTNTNCTAGCCCCNATTANCN
GTNANAACTTTTGAAAANCCNTAAAAACCCCCNACTCAAACCCCCNCTNT
AACTTATTNNTTAACCCTTTTTTTAAAAAA
Gap no gap
Contig length 330
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U12766
List of clone(s) 

est1=AHM175Z,1,321
Translated Amino Acid sequence 
XXXDXDPKPXXXKTXAXXSXGXAVGXAVGGAXALGVFIFXGKKGXXYWKXXQGXXXAPSX
AXPLXEXXPSGGEXPIXXSPXXXXXLLKXXKNPXLKPPL*lix*pff*k
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxixixnxxfxklxlxxxlxxllxxllxgxxplgxlflxxkkvxxtgxxxkxxxxpxq
xpipfxkxixxxxkxxfxlapixxxnf*kxxktpxsnpxxnlxxnpffkk


Frame B:
xxx*fxsxtxxlxnxcxxfxwxccwxccwxgxcpwgxyfxwxkrxxllexxxrxxxgpxk
xxsplxxxsxxxxkxxxx*pxlxvxtfexp*kpptqtpxxtyxltlflk


Frame C:
XXXDXDPKPXXXKTXAXXSXGXAVGXAVGGAXALGVFIFXGKKGXXYWKXXQGXXXAPSX
AXPLXEXXPSGGEXPIXXSPXXXXXLLKXXKNPXLKPPL*lix*pff*k
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12766-1 (Contig-U12766-1Q)
/CSM_Contig/Contig-U12766-1Q.Seq.d
         (330 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Conti...   240  8e-64
Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Conti...   198  3e-51
Contig-U13159-1 (Contig-U13159-1Q) /CSM_Contig/Conti...   163  1e-40
Contig-U14373-1 (Contig-U14373-1Q) /CSM_Contig/Conti...   103  1e-22
Contig-U14013-1 (Contig-U14013-1Q) /CSM_Contig/Conti...    92  4e-19
Contig-U12853-1 (Contig-U12853-1Q) /CSM_Contig/Conti...    66  3e-11
Contig-U12700-1 (Contig-U12700-1Q) /CSM_Contig/Conti...    52  4e-07

>Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Contig-U12766-1Q.Seq.d
          Length = 330

 Score =  240 bits (121), Expect = 8e-64
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  tgatttngatccnaaaccnttnntttgnaaaactgntgctgntgnttcanttggngntgc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  tgatttngatccnaaaccnttnntttgnaaaactgntgctgntgnttcanttggngntgc 70

                                                                       
Query: 71  tgttggngntgctgttggnggggcnantgcccttggggtntttatttttgntggnaaaaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgttggngntgctgttggnggggcnantgcccttggggtntttatttttgntggnaaaaa 130

                                                                       
Query: 131 aggttntgnctactggaaancnanncaaggngntncnanggccccntcaaangccnatcc 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aggttntgnctactggaaancnanncaaggngntncnanggccccntcaaangccnatcc 190

                                                                       
Query: 191 cctttangaaancnatccntcnggnggngaaaanccnatttntnctagccccnattancn 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctttangaaancnatccntcnggnggngaaaanccnatttntnctagccccnattancn 250

                                                   
Query: 251 gtnanaacttttgaaaanccntaaaaacccccnactcaaa 290
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtnanaacttttgaaaanccntaaaaacccccnactcaaa 290


>Contig-U12768-1 (Contig-U12768-1Q) /CSM_Contig/Contig-U12768-1Q.Seq.d
          Length = 300

 Score =  198 bits (100), Expect = 3e-51
 Identities = 258/280 (92%)
 Strand = Plus / Plus

                                                                       
Query: 11  tgatttngatccnaaaccnttnntttgnaaaactgntgctgntgnttcanttggngntgc 70
           |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct: 17  tgatttngatccnaaaccnttnntttgnaaaactgntgctgntgtttcagttggngttgc 76

                                                                       
Query: 71  tgttggngntgctgttggnggggcnantgcccttggggtntttatttttgntggnaaaaa 130
           |||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||
Sbjct: 77  tgttggngntgctgttggtggngcnantgcncttggngtntttatttttgntggtaaaaa 136

                                                                       
Query: 131 aggttntgnctactggaaancnanncaaggngntncnanggccccntcaaangccnatcc 190
           |||||||||||||||||||||||  ||||||| |||||||||| | | ||||||||||||
Sbjct: 137 aggttntgnctactggaaancnagtcaaggngttncnanggccncatnaaangccnatcc 196

                                                                       
Query: 191 cctttangaaancnatccntcnggnggngaaaanccnatttntnctagccccnattancn 250
           ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||
Sbjct: 197 cctttangaaancnatccntcaggnggngaaaatccnatttatnctagccccnattancn 256

                                                   
Query: 251 gtnanaacttttgaaaanccntaaaaacccccnactcaaa 290
           || ||||||||| |||| || | |||||||||||||||||
Sbjct: 257 gtaanaacttttnaaaatccatnaaaacccccnactcaaa 296


>Contig-U13159-1 (Contig-U13159-1Q) /CSM_Contig/Contig-U13159-1Q.Seq.d
          Length = 268

 Score =  163 bits (82), Expect = 1e-40
 Identities = 221/232 (95%)
 Strand = Plus / Plus

                                                                       
Query: 11  tgatttngatccnaaaccnttnntttgnaaaactgntgctgntgnttcanttggngntgc 70
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 35  tgatttngatccnaaaccnttnntttgnaaaactgntgctgntgtttcanttggngntgc 94

                                                                       
Query: 71  tgttggngntgctgttggnggggcnantgcccttggggtntttatttttgntggnaaaaa 130
           |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 95  tgttggngntgctgttggnggggcnantgcncttggggtntttanttttggtggnaaaaa 154

                                                                       
Query: 131 aggttntgnctactggaaancnanncaaggngntncnanggccccntcaaangccnatcc 190
           ||||||||||||||||||||| |  |||||||||||||||||| ||| ||||||||||||
Sbjct: 155 aggttntgnctactggaaancaagtcaaggngntncnanggccncntnaaangccnatcc 214

                                                               
Query: 191 cctttangaaancnatccntcnggnggngaaaanccnatttntnctagcccc 242
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 215 cctttangaaancnatccntcaggnggngaaaanncnatttntnctagcccc 266


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112
Number of Sequences: 6905
Number of extensions: 112
Number of successful extensions: 7
Number of sequences better than 10.0: 7
length of query: 330
length of database: 5,674,871
effective HSP length: 15
effective length of query: 315
effective length of database: 5,571,296
effective search space: 1754958240
effective search space used: 1754958240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Contig-U12766-1Q.Seq.d
         (330 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ355112) Dictyostelium discoideum cDNA clone:dda55e19, 3' ...   101   2e-41  2
(BJ349854) Dictyostelium discoideum cDNA clone:dda37i20, 3' ...   100   2e-35  2
(BJ349050) Dictyostelium discoideum cDNA clone:dda35p06, 3' ...    98   3e-33  2
(BJ357269) Dictyostelium discoideum cDNA clone:dda63a06, 3' ...    98   3e-33  2
(BJ347982) Dictyostelium discoideum cDNA clone:dda31f23, 3' ...    98   3e-33  2
(BJ351296) Dictyostelium discoideum cDNA clone:dda42o18, 3' ...    98   5e-32  2
(BJ356617) Dictyostelium discoideum cDNA clone:dda60k20, 3' ...    98   5e-32  2
(BJ353764) Dictyostelium discoideum cDNA clone:dda51i07, 3' ...    94   5e-32  2
(BJ355449) Dictyostelium discoideum cDNA clone:dda57j06, 3' ...   100   5e-32  2
(BJ348661) Dictyostelium discoideum cDNA clone:dda33n20, 3' ...    94   5e-32  2
(BJ381587) Dictyostelium discoideum cDNA clone:ddc42b03, 3' ...    94   5e-32  2
(BJ349217) Dictyostelium discoideum cDNA clone:dda35d19, 3' ...    92   2e-31  2
(BJ347868) Dictyostelium discoideum cDNA clone:dda31o07, 3' ...    94   8e-31  2
(BJ355132) Dictyostelium discoideum cDNA clone:dda55i19, 3' ...    94   8e-31  2
(BJ348147) Dictyostelium discoideum cDNA clone:dda32g10, 3' ...    94   3e-30  2
(BJ354405) Dictyostelium discoideum cDNA clone:dda53c15, 3' ...    86   3e-30  2
(BJ351505) Dictyostelium discoideum cDNA clone:dda43o14, 3' ...    92   3e-30  2
(BJ349935) Dictyostelium discoideum cDNA clone:dda38k03, 3' ...    88   3e-30  2
(BJ353723) Dictyostelium discoideum cDNA clone:dda51p03, 3' ...    92   1e-29  2
(BJ357106) Dictyostelium discoideum cDNA clone:dda62p11, 3' ...    94   1e-29  2
(BJ355096) Dictyostelium discoideum cDNA clone:dda55a23, 3' ...    92   1e-29  2
(BJ348266) Dictyostelium discoideum cDNA clone:dda32o13, 3' ...    94   1e-29  2
(BJ356719) Dictyostelium discoideum cDNA clone:dda61a12, 3' ...    94   1e-29  2
(BJ349255) Dictyostelium discoideum cDNA clone:dda35l20, 3' ...    94   5e-29  2
(BJ385679) Dictyostelium discoideum cDNA clone:ddc55d24, 3' ...    90   5e-29  2
(BJ354763) Dictyostelium discoideum cDNA clone:dda54m14, 3' ...    92   2e-28  2
(BJ355236) Dictyostelium discoideum cDNA clone:dda56l05, 3' ...    92   2e-28  2
(BJ348483) Dictyostelium discoideum cDNA clone:dda33j11, 3' ...    88   2e-28  2
(BJ385300) Dictyostelium discoideum cDNA clone:ddc54b13, 3' ...    92   2e-28  2
(BJ342509) Dictyostelium discoideum cDNA clone:dda14i11, 3' ...    92   7e-28  2
(BJ358089) Dictyostelium discoideum cDNA clone:dda65p16, 3' ...    88   7e-28  2
(BJ382480) Dictyostelium discoideum cDNA clone:ddc44j24, 3' ...    92   7e-28  2
(BJ401899) Dictyostelium discoideum cDNA clone:dds19c22, 3' ...    92   7e-28  2
(BJ346071) Dictyostelium discoideum cDNA clone:dda29c02, 3' ...    90   3e-27  2
(BJ349366) Dictyostelium discoideum cDNA clone:dda36c12, 3' ...    84   3e-27  2
(BJ348878) Dictyostelium discoideum cDNA clone:dda34l18, 3' ...    84   3e-27  2
(BJ349951) Dictyostelium discoideum cDNA clone:dda38n03, 3' ...    90   1e-26  2
(BJ354400) Dictyostelium discoideum cDNA clone:dda53b15, 3' ...    90   1e-26  2
(AU034939) Dictyostelium discoideum slug cDNA, clone SLE370.       90   1e-26  2
(C94367) Dictyostelium discoideum slug cDNA, clone SSK891.         90   1e-26  2
(AU033416) Dictyostelium discoideum slug cDNA, clone SLA743.       90   1e-26  2
(AU033415) Dictyostelium discoideum slug cDNA, clone SLA742.       90   1e-26  2
(BJ352099) Dictyostelium discoideum cDNA clone:dda45j15, 3' ...    90   1e-26  2
(BJ355105) Dictyostelium discoideum cDNA clone:dda55c22, 3' ...    90   1e-26  2
(BJ353939) Dictyostelium discoideum cDNA clone:dda52a02, 3' ...    90   1e-26  2
(BJ402751) Dictyostelium discoideum cDNA clone:dds17l22, 3' ...    82   1e-26  2
(C93110) Dictyostelium discoideum slug cDNA, clone SSM566.         90   1e-26  2
(AU052790) Dictyostelium discoideum slug cDNA, clone SLF104.       90   1e-26  2
(AU038832) Dictyostelium discoideum slug cDNA, clone SSL537.       90   1e-26  2
(BJ351475) Dictyostelium discoideum cDNA clone:dda43h17, 3' ...    90   1e-26  2
(AU052855) Dictyostelium discoideum slug cDNA, clone SLF214.       90   1e-26  2
(BJ357184) Dictyostelium discoideum cDNA clone:dda62a19, 3' ...    90   1e-26  2
(BJ351867) Dictyostelium discoideum cDNA clone:dda44i23, 3' ...    90   1e-26  2
(AU039490) Dictyostelium discoideum slug cDNA, clone SLH882.       90   1e-26  2
(AU033699) Dictyostelium discoideum slug cDNA, clone SLB330.       90   1e-26  2
(AU034927) Dictyostelium discoideum slug cDNA, clone SLE350.       90   1e-26  2
(BJ380435) Dictyostelium discoideum cDNA clone:ddc38l02, 3' ...    86   4e-26  2
(BJ355277) Dictyostelium discoideum cDNA clone:dda56e10, 3' ...    86   4e-26  2
(BJ383524) Dictyostelium discoideum cDNA clone:ddc53g12, 3' ...    76   2e-25  2
(BJ350736) Dictyostelium discoideum cDNA clone:dda40i20, 3' ...    82   6e-25  2
(BJ355166) Dictyostelium discoideum cDNA clone:dda55o20, 3' ...    78   6e-25  2
(BJ350031) Dictyostelium discoideum cDNA clone:dda38p07, 3' ...    82   2e-24  2
(BJ379392) Dictyostelium discoideum cDNA clone:ddc34a19, 3' ...    92   2e-24  2
(BJ376250) Dictyostelium discoideum cDNA clone:ddc21c19, 3' ...    74   4e-23  2
(BJ357502) Dictyostelium discoideum cDNA clone:dda63b23, 3' ...    76   4e-23  2
(BJ383525) Dictyostelium discoideum cDNA clone:ddc53h09, 3' ...    78   4e-23  2
(BJ352373) Dictyostelium discoideum cDNA clone:dda46e14, 3' ...    76   1e-22  2
(BJ356052) Dictyostelium discoideum cDNA clone:dda59g05, 3' ...    70   6e-22  2
(BJ343144) Dictyostelium discoideum cDNA clone:dda22m03, 3' ...    76   2e-21  2
(BJ345697) Dictyostelium discoideum cDNA clone:dda28d15, 3' ...    70   2e-21  2
(BJ349476) Dictyostelium discoideum cDNA clone:dda36i16, 3' ...    76   2e-21  2
(BJ384009) Dictyostelium discoideum cDNA clone:ddc47n19, 3' ...    74   8e-21  2
(BJ350200) Dictyostelium discoideum cDNA clone:dda39g02, 3' ...    82   1e-19  2
(BJ342579) Dictyostelium discoideum cDNA clone:dda14n16, 3' ...    72   2e-18  2
(BJ400492) Dictyostelium discoideum cDNA clone:dds13b16, 3' ...    70   7e-18  2
(BJ401594) Dictyostelium discoideum cDNA clone:dds23d23, 3' ...    74   8e-18  2
(BJ354993) Dictyostelium discoideum cDNA clone:dda55l07, 3' ...   100   6e-17  1
(BJ354852) Dictyostelium discoideum cDNA clone:dda54p23, 3' ...   100   6e-17  1
(BJ351586) Dictyostelium discoideum cDNA clone:dda43p21, 3' ...   100   6e-17  1
(BJ351473) Dictyostelium discoideum cDNA clone:dda43h14, 3' ...   100   6e-17  1
(BJ349662) Dictyostelium discoideum cDNA clone:dda37b07, 3' ...   100   6e-17  1
(BJ384139) Dictyostelium discoideum cDNA clone:ddc48k11, 3' ...    98   2e-16  1
(BJ354200) Dictyostelium discoideum cDNA clone:dda52j22, 3' ...    98   2e-16  1
(BJ350202) Dictyostelium discoideum cDNA clone:dda39g05, 3' ...    98   2e-16  1
(BJ349933) Dictyostelium discoideum cDNA clone:dda38j05, 3' ...    96   9e-16  1
(BJ398435) Dictyostelium discoideum cDNA clone:dds12n12, 3' ...    68   2e-15  2
(BJ356697) Dictyostelium discoideum cDNA clone:dda61m01, 3' ...    94   4e-15  1
(BJ355227) Dictyostelium discoideum cDNA clone:dda56k02, 3' ...    94   4e-15  1
(BJ351690) Dictyostelium discoideum cDNA clone:dda44e12, 3' ...    94   4e-15  1
(BJ378370) Dictyostelium discoideum cDNA clone:ddc31p15, 3' ...    92   1e-14  1
(BJ357516) Dictyostelium discoideum cDNA clone:dda63e22, 3' ...    92   1e-14  1
(BJ356042) Dictyostelium discoideum cDNA clone:dda59e05, 3' ...    92   1e-14  1
(BJ354671) Dictyostelium discoideum cDNA clone:dda54j12, 3' ...    92   1e-14  1
(BJ354513) Dictyostelium discoideum cDNA clone:dda53i23, 3' ...    92   1e-14  1
(BJ354500) Dictyostelium discoideum cDNA clone:dda53g19, 3' ...    92   1e-14  1
(BJ350992) Dictyostelium discoideum cDNA clone:dda41m14, 3' ...    92   1e-14  1
(AU034792) Dictyostelium discoideum slug cDNA, clone SLE336.       90   6e-14  1
(C90536) Dictyostelium discoideum slug cDNA, clone SSI689.         90   6e-14  1
(BJ356317) Dictyostelium discoideum cDNA clone:dda59n22, 3' ...    90   6e-14  1
(BJ349154) Dictyostelium discoideum cDNA clone:dda35f17, 3' ...    90   6e-14  1

>(BJ355112) Dictyostelium discoideum cDNA clone:dda55e19, 3' end,
           single read.
          Length = 321

 Score =  101 bits (51), Expect(2) = 2e-41
 Identities = 111/111 (100%)
 Strand = Plus / Minus


Query: 98  tgcccttggggtntttatttttgntggnaaaaaaggttntgnctactggaaancnannca 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tgcccttggggtntttatttttgntggnaaaaaaggttntgnctactggaaancnannca 175


Query: 158 aggngntncnanggccccntcaaangccnatcccctttangaaancnatcc 208
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aggngntncnanggccccntcaaangccnatcccctttangaaancnatcc 124

 Score = 99.6 bits (50), Expect(2) = 2e-41
 Identities = 98/98 (100%)
 Strand = Plus / Minus


Query: 220 aaaanccnatttntnctagccccnattancngtnanaacttttgaaaanccntaaaaacc 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaaanccnatttntnctagccccnattancngtnanaacttttgaaaanccntaaaaacc 53


Query: 280 cccnactcaaacccccnctntaacttattnnttaaccc 317
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 52  cccnactcaaacccccnctntaacttattnnttaaccc 15

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 61,096,543
Number of extensions: 3052641
Number of successful extensions: 2778
Number of sequences better than 10.0: 180
Length of query: 330
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 307
Effective length of database: 93,106,754,628
Effective search space: 28583773670796
Effective search space used: 28583773670796
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Contig-U12766-1Q.Seq.d
         (330 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 48   9e-05
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    42   0.009
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 37   0.28
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    36   0.36

>(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;
          Length = 733

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 28/77 (36%), Positives = 31/77 (40%)
 Frame = +3

Query: 12  DXDPKPXXXKTXAXXSXGXXXXXXXXXXXXXXXFIFXGKKGXXYWKXXQGXXXAPSXAXP 191
           D DPKP   +  A  S                  IF GKKG   WK  QG   A S A P
Sbjct: 656 DYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANP 715

Query: 192 LXEXXPSGGEXPIXXSP 242
           L     +GGE P+  SP
Sbjct: 716 LYTQSSNGGENPLYNSP 732

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 175,572,390
Number of extensions: 7509620
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 4
Length of query: 110
Length of database: 1,051,180,864
Length adjustment: 77
Effective length of query: 33
Effective length of database: 801,965,821
Effective search space: 26464872093
Effective search space used: 26464872093
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.87  gvh: 0.54  alm: 0.32  top: 0.67  tms: 0.07  mit: -0.04  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U12766-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0