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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U12765-1
Contig ID Contig-U12765-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Contig-U12765-1Q.Seq.d
CAAAAAGGAAACACTAGTCCAGTTAGAACCCCAAATACTACTACTACTAC
TACCACCACTACTACCAGTCCATTAAAACCAGTAACACCAACCCCAATAA
CCACTAATAAACCAGTAACACCAACCCCAATAACCACTAATAAACCAGTA
GCACCAGCACCAACAACAAAAGATTCTATCAGACAATGCGATATTCCTAT
GACAGAATCAAATTACTATGTACTTGAAAAAATATTTTTAATTTATTTAC
AACCAAATAATAATTTACCAGAGAAATCAATTTATTTACCATCAGTTAAT
GAACAAATTAAAGTAAGAGATAAAAGATGGACAATTGAAATTAGATAAAC
CAGTTTTAGATAGAATATTAGTTGAAAGATTATCAACAAAAGTTCAAGGT
GTACCAGCTGTAGAATATTTAATTTCATGTTTTAATAGAATTCAACAAAC
TATAAAAAAGAAAATGGCAATAGATCAACAAATATTAAAAGATTCAACCC
GAATTGGTACTTTTATATTTTGGTTTAGTTTTAACCATACCCGATATGTT
TCAAAATACATCATCATCCTATGGTATTGGTCCAGTTCAATTAATGCCTT
ATCTTTGTGGTGAAACAACTGAAGAATTAACTGATGAATTCATTTTCAAA
TTTTTAAGTGAATACCAAGAAGATCTAACACCAATTTTTGAACCAATATT
TTTAGATTTAATAAAAATTTTATCAACTACAACTTTAACTGGTAATGTAT
TCCCATACTATAAAGTATTTTCAAGATTGGTACAATTTAAAGCTGTATCT
GATCTTGTTGGTACTTTACAATGTTGGAATAGTCCAAATTTTAATGGTAA
AGAAATGGAGCGTAATACAATTTTAGGTTCATTATTTTCACCAAGTTCTG
CTTCTGATGATGGATCAACAATTAAACAATACTTTTCAAATGCATCAACA
ATGAATAAAAATACAATTGGTGATGCATTTATTTCAATTAGACAAATTCA
AATGAATATTCATAATGGATTAGTTGATTTATTAAAAGGATTTTTAAAGG
TACAACAAGAGAATAAGGAAGCATTCTTATCATGGTTAGCATCAGCAGTT
GAAAAGAATCTTGAACGTAATAAATTACAAGTTGATCGTACCAAAGCATG
TAGTGATGGTTTTGCTTTGAATTTATGTGCTGTATTGGTATTGTTATGTG
AAGCATTTGTCGATATCGATTGTTCAAAGGTTTCAATGGTTGATACTAAT
TTCTTA
Gap no gap
Contig length 1256
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1467819
End point 1466563
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U12765
List of clone(s) 

est1=AHC526F,1,577
est2=AHM108F,258,826
est3=CFH639Z,370,1257
Translated Amino Acid sequence 
krkh*ss*npkyyyyyyhhyyqsiktsntnpnnh**tsntnpnnh**tsststnnkrfyq
tmrysydrikllct*knifnlfttk**ftreinlftis**tn*skr*kmdn*n*inqf*i
ey*lkdyqqkfkvyql*ni*fhvliefnkl*krkwq*inky*KIQPELVLLYFGLVLTIP
DMFQNTSSSYGIGPVQLMPYLCGETTEELTDEFIFKFLSEYQEDLTPIFEPIFLDLIKIL
STTTLTGNVFPYYKVFSRLVQFKAVSDLVGTLQCWNSPNFNGKEMERNTILGSLFSPSSA
SDDGSTIKQYFSNASTMNKNTIGDAFISIRQIQMNIHNGLVDLLKGFLKVQQENKEAFLS
WLASAVEKNLERNKLQVDRTKACSDGFALNLCAVLVLLCEAFVDIDCSKVSMVDTNFL
Translated Amino Acid sequence (All Frames) 
Frame A:
qkgntspvrtpnttttttttttsplkpvtptpittnkpvtptpittnkpvapapttkdsi
rqcdipmtesnyyvlekifliylqpnnnlpeksiylpsvneqikvrdkrwtieir*tsfr
*nis*kiinkssrctscrifnfmf**nstnykkengnrstnikrfnpnwyfyilv*f*py
picfkihhhpmvlvqfn*clifvvkqlkn*lmnsfsnf*vntkki*hqflnqyf*i**kf
yqlql*lvmyshtikyfqdwynlklylillvlynvgivqilmvkkwsviqf*vhyfhqvl
llmmdqqlnntfqmhqq*ikiqlvmhlfqldkfk*ifimd*liy*kdf*rynkrirkhsy
hg*hqqlkrilnvinyklivpkhvvmvll*iyvlywycyvkhlsisivqrfqwlilis


Frame B:
kketlvqlepqilllllppllpvh*nq*hqpq*plinq*hqpq*plinq*hqhqqqkils
dnaifl*qnqitmylkkyf*fiynqiiiyqrnqfiyhqlmnklk*eikdgqlkldkpvld
rilverlstkvqgvpaveyliscfnriqqtikkkmaidqqilkdstrigtfifwfsfnht
ryvskyiiilwywsssinalslw*nn*rin**ihfqifk*iprrsntnf*tnifrfnknf
inynfnw*cipil*sifkigti*sci*scwyftmle*skf*w*rnga*ynfrfiiftkfc
f**winn*tilfkcinne*kynw*ciyfn*tnsneys*wis*fikrifkgttre*gsili
mvsiss*kes*t**its*syqsm**wfcfefmccigivm*sicryrlfkgfng*y*fl


Frame C:
krkh*ss*npkyyyyyyhhyyqsiktsntnpnnh**tsntnpnnh**tsststnnkrfyq
tmrysydrikllct*knifnlfttk**ftreinlftis**tn*skr*kmdn*n*inqf*i
ey*lkdyqqkfkvyql*ni*fhvliefnkl*krkwq*inky*KIQPELVLLYFGLVLTIP
DMFQNTSSSYGIGPVQLMPYLCGETTEELTDEFIFKFLSEYQEDLTPIFEPIFLDLIKIL
STTTLTGNVFPYYKVFSRLVQFKAVSDLVGTLQCWNSPNFNGKEMERNTILGSLFSPSSA
SDDGSTIKQYFSNASTMNKNTIGDAFISIRQIQMNIHNGLVDLLKGFLKVQQENKEAFLS
WLASAVEKNLERNKLQVDRTKACSDGFALNLCAVLVLLCEAFVDIDCSKVSMVDTNFL
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12765-1 (Contig-U12765-1Q)
/CSM_Contig/Contig-U12765-1Q.Seq.d
         (1256 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Conti...  2361  0.0
Contig-U10748-1 (Contig-U10748-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14110-1 (Contig-U14110-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12590-1 (Contig-U12590-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U10243-1 (Contig-U10243-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U09287-1 (Contig-U09287-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U03715-1 (Contig-U03715-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14058-1 (Contig-U14058-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U13965-1 (Contig-U13965-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U13824-1 (Contig-U13824-1Q) /CSM_Contig/Conti...    36  0.089

>Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Contig-U12765-1Q.Seq.d
          Length = 1256

 Score = 2361 bits (1191), Expect = 0.0
 Identities = 1191/1191 (100%)
 Strand = Plus / Plus

                                                                        
Query: 66   cagtccattaaaaccagtaacaccaaccccaataaccactaataaaccagtaacaccaac 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66   cagtccattaaaaccagtaacaccaaccccaataaccactaataaaccagtaacaccaac 125

                                                                        
Query: 126  cccaataaccactaataaaccagtagcaccagcaccaacaacaaaagattctatcagaca 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126  cccaataaccactaataaaccagtagcaccagcaccaacaacaaaagattctatcagaca 185

                                                                        
Query: 186  atgcgatattcctatgacagaatcaaattactatgtacttgaaaaaatatttttaattta 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186  atgcgatattcctatgacagaatcaaattactatgtacttgaaaaaatatttttaattta 245

                                                                        
Query: 246  tttacaaccaaataataatttaccagagaaatcaatttatttaccatcagttaatgaaca 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246  tttacaaccaaataataatttaccagagaaatcaatttatttaccatcagttaatgaaca 305

                                                                        
Query: 306  aattaaagtaagagataaaagatggacaattgaaattagataaaccagttttagatagaa 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306  aattaaagtaagagataaaagatggacaattgaaattagataaaccagttttagatagaa 365

                                                                        
Query: 366  tattagttgaaagattatcaacaaaagttcaaggtgtaccagctgtagaatatttaattt 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366  tattagttgaaagattatcaacaaaagttcaaggtgtaccagctgtagaatatttaattt 425

                                                                        
Query: 426  catgttttaatagaattcaacaaactataaaaaagaaaatggcaatagatcaacaaatat 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426  catgttttaatagaattcaacaaactataaaaaagaaaatggcaatagatcaacaaatat 485

                                                                        
Query: 486  taaaagattcaacccgaattggtacttttatattttggtttagttttaaccatacccgat 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  taaaagattcaacccgaattggtacttttatattttggtttagttttaaccatacccgat 545

                                                                        
Query: 546  atgtttcaaaatacatcatcatcctatggtattggtccagttcaattaatgccttatctt 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  atgtttcaaaatacatcatcatcctatggtattggtccagttcaattaatgccttatctt 605

                                                                        
Query: 606  tgtggtgaaacaactgaagaattaactgatgaattcattttcaaatttttaagtgaatac 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  tgtggtgaaacaactgaagaattaactgatgaattcattttcaaatttttaagtgaatac 665

                                                                        
Query: 666  caagaagatctaacaccaatttttgaaccaatatttttagatttaataaaaattttatca 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  caagaagatctaacaccaatttttgaaccaatatttttagatttaataaaaattttatca 725

                                                                        
Query: 726  actacaactttaactggtaatgtattcccatactataaagtattttcaagattggtacaa 785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  actacaactttaactggtaatgtattcccatactataaagtattttcaagattggtacaa 785

                                                                        
Query: 786  tttaaagctgtatctgatcttgttggtactttacaatgttggaatagtccaaattttaat 845
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  tttaaagctgtatctgatcttgttggtactttacaatgttggaatagtccaaattttaat 845

                                                                        
Query: 846  ggtaaagaaatggagcgtaatacaattttaggttcattattttcaccaagttctgcttct 905
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  ggtaaagaaatggagcgtaatacaattttaggttcattattttcaccaagttctgcttct 905

                                                                        
Query: 906  gatgatggatcaacaattaaacaatacttttcaaatgcatcaacaatgaataaaaataca 965
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  gatgatggatcaacaattaaacaatacttttcaaatgcatcaacaatgaataaaaataca 965

                                                                        
Query: 966  attggtgatgcatttatttcaattagacaaattcaaatgaatattcataatggattagtt 1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  attggtgatgcatttatttcaattagacaaattcaaatgaatattcataatggattagtt 1025

                                                                        
Query: 1026 gatttattaaaaggatttttaaaggtacaacaagagaataaggaagcattcttatcatgg 1085
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 gatttattaaaaggatttttaaaggtacaacaagagaataaggaagcattcttatcatgg 1085

                                                                        
Query: 1086 ttagcatcagcagttgaaaagaatcttgaacgtaataaattacaagttgatcgtaccaaa 1145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ttagcatcagcagttgaaaagaatcttgaacgtaataaattacaagttgatcgtaccaaa 1145

                                                                        
Query: 1146 gcatgtagtgatggttttgctttgaatttatgtgctgtattggtattgttatgtgaagca 1205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gcatgtagtgatggttttgctttgaatttatgtgctgtattggtattgttatgtgaagca 1205

                                                               
Query: 1206 tttgtcgatatcgattgttcaaaggtttcaatggttgatactaatttctta 1256
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 tttgtcgatatcgattgttcaaaggtttcaatggttgatactaatttctta 1256


 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  caaaaaggaaacactagtccagttagaaccccaaa 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  caaaaaggaaacactagtccagttagaaccccaaa 35


>Contig-U10748-1 (Contig-U10748-1Q) /CSM_Contig/Contig-U10748-1Q.Seq.d
          Length = 4060

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 956 taaaaatacaattggtgatg 975
           ||||||||||||||||||||
Sbjct: 248 taaaaatacaattggtgatg 229


>Contig-U14110-1 (Contig-U14110-1Q) /CSM_Contig/Contig-U14110-1Q.Seq.d
          Length = 129

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 233 tatttttaatttatttaca 251
           |||||||||||||||||||
Sbjct: 86  tatttttaatttatttaca 104


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,936
Number of Sequences: 6905
Number of extensions: 26936
Number of successful extensions: 3230
Number of sequences better than 10.0: 409
length of query: 1256
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1240
effective length of database: 5,564,391
effective search space: 6899844840
effective search space used: 6899844840
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 3
Homology vs DNA 
Query= Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Contig-U12765-1Q.Seq.d
         (1256 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF044255) Dictyostelium discoideum NOSA (nosA) mRNA, comple...  1495   0.0    3
(BJ374822) Dictyostelium discoideum cDNA clone:ddc16m10, 3' ...  1011   0.0    1
(BJ336803) Dictyostelium discoideum cDNA clone:dda55o01, 5' ...   644   0.0    4
(BJ331589) Dictyostelium discoideum cDNA clone:dda36c07, 5' ...   521   0.0    3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.001  19
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.002  19
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    42   0.002  2
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    42   0.002  2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    42   0.002  2
(CP000727) Clostridium botulinum A str. Hall, complete genome.     42   0.002  2
(AP009744) Lotus japonicus genomic DNA, clone: LjT30L13, TM1...    38   0.008  9
(AW829494) ra40h01.y1 Bird-Rao Meloidogyne incognita J2 Melo...    42   0.024  3
(CR925819) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.025  8
(CR382300) Zebrafish DNA sequence from clone DKEY-25E11 in l...    44   0.044  7
(AC183767) Pan troglodytes BAC clone CH251-373L9 from chromo...    38   0.049  7
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    36   0.058  22
(BZ011795) oeh48g11.g1 B.oleracea002 Brassica oleracea genom...    44   0.060  2
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    46   0.074  23
(Z68316) Caenorhabditis elegans Cosmid K08E4.                      32   0.078  5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    40   0.084  12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.087  10
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.090  16
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.10   16
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.10   16
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   0.12   21
(EJ082558) 1095460058845 Global-Ocean-Sampling_GS-26-01-01-1...    32   0.15   3
(AC211307) Populus trichocarpa clone POP006-B16, complete se...    42   0.16   8
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    36   0.17   20
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.17   19
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.21   1
(AP003313) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.21   1
(EA682958) Sequence 61837 from patent US 7365185.                  50   0.21   1
(ER577193) 1093015816170 Global-Ocean-Sampling_GS-36-01-01-2...    50   0.21   1
(CW666763) OG_BBa0021N06.r OG_BBa Oryza glaberrima genomic c...    50   0.21   1
(CL618663) OR_BBa0012C08.f OR_BBa Oryza nivara genomic clone...    50   0.21   1
(CD295322) StrPu691.006717 Sea urchin larva cDNA library MPM...    50   0.21   1
(FC476625) CAXH8357.fwd CAXH Mnemiopsis leidyi whole animal ...    50   0.21   1
(FC476624) CAXH8357.rev CAXH Mnemiopsis leidyi whole animal ...    50   0.21   1
(FC466541) CAXH3560.fwd CAXH Mnemiopsis leidyi whole animal ...    50   0.21   1
(FC466540) CAXH3560.rev CAXH Mnemiopsis leidyi whole animal ...    50   0.21   1
(FC462386) CAXH1025.fwd CAXH Mnemiopsis leidyi whole animal ...    50   0.21   1
(FC462385) CAXH1025.rev CAXH Mnemiopsis leidyi whole animal ...    50   0.21   1
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    40   0.21   20
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    32   0.25   11
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.30   14
(AC210346) Solanum lycopersicum chromosome 7 clone C07HBa000...    36   0.31   9
(AP009545) Solanum lycopersicum DNA, chromosome 8, clone: C0...    40   0.36   8
(AG303485) Mus musculus molossinus DNA, clone:MSMg01-083F06....    34   0.36   3
(BX572622) Zebrafish DNA sequence from clone CH211-150O20 in...    36   0.50   8
(AC022017) Homo sapiens chromosome 10 clone RP11-210G22, com...    36   0.51   9
(AC024458) Homo sapiens chromosome 13 clone RP11-172N12 map ...    46   0.54   7
(FH098479) CHO_OF3031xf22r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   0.56   3
(DX064968) KBrB072J19F KBrB, Brassica rapa BamHI BAC library...    34   0.56   3
(AP010223) Lotus japonicus genomic DNA, clone: LjT48H14, TM1...    40   0.56   5
(CO436515) GD317 Glycyphagus domesticus cDNA library Glycyph...    34   0.58   2
(CO436524) GD325 Glycyphagus domesticus cDNA library Glycyph...    34   0.58   2
(CO436590) GD39 Glycyphagus domesticus cDNA library Glycypha...    34   0.58   2
(AY283294) Blomia tropicalis isolate BT1694 Blo t 13 allerge...    34   0.58   2
(CB283324) BT1694 Blomia tropicalis cDNA library Blomia trop...    34   0.58   2
(AC091739) Homo sapiens chromosome UNK clone RP11-623E20, **...    46   0.61   6
(CP000312) Clostridium perfringens SM101, complete genome.         36   0.61   20
(CR626868) Zebrafish DNA sequence from clone DKEY-164P4 in l...    38   0.67   5
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    32   0.70   7
(AM427875) Vitis vinifera contig VV78X101547.2, whole genome...    38   0.71   3
(CW140140) 104_530_11135625_116_34912_037 Sorghum methylatio...    40   0.75   2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   0.76   12
(AC177743) Strongylocentrotus purpuratus clone R3-1008E14, W...    36   0.78   10
(CB856209) ri49e08.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    36   0.80   3
(BX470070) Zebrafish DNA sequence from clone CH211-194B21 in...    48   0.81   1
(AB254824) Paralichthys olivaceus NITR gene for novel immune...    48   0.81   1
(AP010449) Lotus japonicus genomic DNA, chromosome 2, clone:...    48   0.81   1
(AC226510) Solanum lycopersicum chromosome 2 clone C02HBa017...    48   0.81   1
(AX346205) Sequence 1276 from Patent WO0200928.                    48   0.81   1
(AR584244) Sequence 1 from patent US 6797466.                      48   0.81   1
(AR271569) Sequence 1 from patent US 6503729.                      48   0.81   1
(AF020503) Homo sapiens FRA3B common fragile region, diadeno...    48   0.81   1
(AC099536) Homo sapiens chromosome 3 clone RP11-27C2, comple...    48   0.81   1
(AC093556) Homo sapiens chromosome 3 clone RP11-48E21, compl...    48   0.81   1
(AC055708) Homo sapiens chromosome 3 clone RP11-89B6, WORKIN...    48   0.81   1
(AP007417) Lotus japonicus genomic DNA, chromosome 2, clone:...    48   0.81   1
(AC226014) Solanum lycopersicum chromosome 6 clone C06SLm002...    48   0.81   1
(AC172786) Bos taurus clone CH240-247N17, WORKING DRAFT SEQU...    48   0.81   1
(AC169042) Bos taurus clone CH240-237L13, WORKING DRAFT SEQU...    48   0.81   1
(AC021406) Homo sapiens clone RP11-29O20, WORKING DRAFT SEQU...    48   0.81   1
(BH207121) Sm1-60E12.TF Sm1 Schistosoma mansoni genomic clon...    48   0.81   1
(EK375291) 1095469435746 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.81   1
(ED615200) GM_WBa0007H04.r GM_WBa Glycine max genomic clone ...    48   0.81   1
(DU962757) 233618 Tomato MboI BAC Library Solanum lycopersic...    48   0.81   1
(CZ424062) 1019765 RP42 Bos taurus genomic clone RP42-71E03,...    48   0.81   1
(AG242220) Lotus japonicus DNA, clone:LjT10f01_sfi.                48   0.81   1
(FF306767) 279367868 Pea aphid whole body normalized full le...    48   0.81   1
(FD661003) CROLF1NG_EX2_158_E02_26AUG2006_008 CROLF1NG Catha...    48   0.81   1
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    48   0.81   1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    30   0.84   12
(AC215623) Populus trichocarpa clone POP004-A06, complete se...    44   0.84   8
(CD419969) rj17d04.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    36   0.90   3
(EJ029675) 1095454041565 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.0    2
(AC147317) Pan troglodytes BAC clone RP43-49P4 from chromoso...    38   1.1    7
(AC097651) Homo sapiens chromosome 4 clone RP11-130F6, WORKI...    38   1.1    7
(CB931237) ri55b12.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    36   1.4    3

>(AF044255) Dictyostelium discoideum NOSA (nosA) mRNA, complete cds.
          Length = 3451

 Score = 1495 bits (754), Expect(3) = 0.0
 Identities = 757/758 (99%)
 Strand = Plus / Plus


Query: 499  ccgaattggtacttttatattttggtttagttttaaccatacccgatatgtttcaaaata 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  ccgaattggtacttttatattttggtttagttttaaccatacccgatatgtttcaaaata 995


Query: 559  catcatcatcctatggtattggtccagttcaattaatgccttatctttgtggtgaaacaa 618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  catcatcatcctatggtattggtccagttcaattaatgccttatctttgtggtgaaacaa 1055


Query: 619  ctgaagaattaactgatgaattcattttcaaatttttaagtgaataccaagaagatctaa 678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ctgaagaattaactgatgaattcattttcaaatttttaagtgaataccaagaagatctaa 1115


Query: 679  caccaatttttgaaccaatatttttagatttaataaaaattttatcaactacaactttaa 738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 caccaatttttgaaccaatatttttagatttaataaaaattttatcaactacaactttaa 1175


Query: 739  ctggtaatgtattcccatactataaagtattttcaagattggtacaatttaaagctgtat 798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 ctggtaatgtattcccatactataaagtattttcaagattggtacaatttaaagctgtat 1235


Query: 799  ctgatcttgttggtactttacaatgttggaatagtccaaattttaatggtaaagaaatgg 858
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 ctgatcttgttgttactttacaatgttggaatagtccaaattttaatggtaaagaaatgg 1295


Query: 859  agcgtaatacaattttaggttcattattttcaccaagttctgcttctgatgatggatcaa 918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 agcgtaatacaattttaggttcattattttcaccaagttctgcttctgatgatggatcaa 1355


Query: 919  caattaaacaatacttttcaaatgcatcaacaatgaataaaaatacaattggtgatgcat 978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 caattaaacaatacttttcaaatgcatcaacaatgaataaaaatacaattggtgatgcat 1415


Query: 979  ttatttcaattagacaaattcaaatgaatattcataatggattagttgatttattaaaag 1038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 ttatttcaattagacaaattcaaatgaatattcataatggattagttgatttattaaaag 1475


Query: 1039 gatttttaaaggtacaacaagagaataaggaagcattcttatcatggttagcatcagcag 1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 gatttttaaaggtacaacaagagaataaggaagcattcttatcatggttagcatcagcag 1535


Query: 1099 ttgaaaagaatcttgaacgtaataaattacaagttgatcgtaccaaagcatgtagtgatg 1158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 ttgaaaagaatcttgaacgtaataaattacaagttgatcgtaccaaagcatgtagtgatg 1595


Query: 1159 gttttgctttgaatttatgtgctgtattggtattgttatgtgaagcatttgtcgatatcg 1218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 gttttgctttgaatttatgtgctgtattggtattgttatgtgaagcatttgtcgatatcg 1655


Query: 1219 attgttcaaaggtttcaatggttgatactaatttctta 1256
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 attgttcaaaggtttcaatggttgatactaatttctta 1693

 Score =  367 bits (185), Expect(3) = 0.0
 Identities = 185/185 (100%)
 Strand = Plus / Plus


Query: 315 aagagataaaagatggacaattgaaattagataaaccagttttagatagaatattagttg 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aagagataaaagatggacaattgaaattagataaaccagttttagatagaatattagttg 812


Query: 375 aaagattatcaacaaaagttcaaggtgtaccagctgtagaatatttaatttcatgtttta 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaagattatcaacaaaagttcaaggtgtaccagctgtagaatatttaatttcatgtttta 872


Query: 435 atagaattcaacaaactataaaaaagaaaatggcaatagatcaacaaatattaaaagatt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 atagaattcaacaaactataaaaaagaaaatggcaatagatcaacaaatattaaaagatt 932


Query: 495 caacc 499
           |||||
Sbjct: 933 caacc 937

 Score =  329 bits (166), Expect(3) = 0.0
 Identities = 166/166 (100%)
 Strand = Plus / Plus


Query: 148 gtagcaccagcaccaacaacaaaagattctatcagacaatgcgatattcctatgacagaa 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtagcaccagcaccaacaacaaaagattctatcagacaatgcgatattcctatgacagaa 646


Query: 208 tcaaattactatgtacttgaaaaaatatttttaatttatttacaaccaaataataattta 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tcaaattactatgtacttgaaaaaatatttttaatttatttacaaccaaataataattta 706


Query: 268 ccagagaaatcaatttatttaccatcagttaatgaacaaattaaag 313
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccagagaaatcaatttatttaccatcagttaatgaacaaattaaag 752

 Score = 69.9 bits (35), Expect = 2e-07
 Identities = 35/35 (100%)
 Strand = Plus / Plus


Query: 1   caaaaaggaaacactagtccagttagaaccccaaa 35
           |||||||||||||||||||||||||||||||||||
Sbjct: 440 caaaaaggaaacactagtccagttagaaccccaaa 474

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,655,302,342
Number of extensions: 113497492
Number of successful extensions: 10063930
Number of sequences better than 10.0: 299
Length of query: 1256
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1232
Effective length of database: 97,308,875,965
Effective search space: 119884535188880
Effective search space used: 119884535188880
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Contig-U12765-1Q.Seq.d
         (1256 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF044255_1(AF044255|pid:none) Dictyostelium discoideum NOSA (nos...   471   e-131
CU638743_488(CU638743|pid:none) Podospora anserina genomic DNA c...    93   2e-20
AF059906_1(AF059906|pid:none) Schizosaccharomyces pombe ubiquiti...    87   2e-15
AM920437_1853(AM920437|pid:none) Penicillium chrysogenum Wiscons...    82   3e-14
DQ683066_1(DQ683066|pid:none) Synthetic construct UFD2 (UFD2) ge...    63   5e-12
AL807372_10(AL807372|pid:none) Neurospora crassa DNA linkage gro...    60   2e-07
T00358(T00358)hypothetical protein KIAA0684 - human (fragment)         59   4e-07
AK292444_1(AK292444|pid:none) Homo sapiens cDNA FLJ78424 complet...    59   4e-07
AB028839_1(AB028839|pid:none) Homo sapiens HDNB1(homzygously del...    59   4e-07
AB014584_1(AB014584|pid:none) Homo sapiens mRNA for KIAA0684 pro...    59   4e-07
(O95155) RecName: Full=Ubiquitin conjugation factor E4 B; AltNam...    59   4e-07
AK304484_1(AK304484|pid:none) Homo sapiens cDNA FLJ50370 complet...    59   4e-07
AK122345_1(AK122345|pid:none) Mus musculus mRNA for mKIAA0684 pr...    58   8e-07
AK029914_1(AK029914|pid:none) Mus musculus adult male testis cDN...    58   8e-07
AE016817_496(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    43   0.021
BC157178_1(BC157178|pid:none) Xenopus tropicalis cDNA clone MGC:...    42   0.046
(P54860) RecName: Full=Ubiquitin conjugation factor E4; AltName:...    35   4.3
U22154_1(U22154|pid:none) Saccharomyces cerevisiae ubiquitin fus...    35   4.3
AC146785_24(AC146785|pid:none) Medicago truncatula clone mth2-4h...    35   5.7
CP001230_818(CP001230|pid:none) Persephonella marina EX-H1, comp...    34   9.7
AJ312240_14(AJ312240|pid:none) Bacteriophage PSA complete genome.      34   9.7

>AF044255_1(AF044255|pid:none) Dictyostelium discoideum NOSA (nosA)
            mRNA, complete cds.  &T14576(T14576)
          Length = 1089

 Score =  471 bits (1213), Expect = e-131
 Identities = 240/256 (93%), Positives = 240/256 (93%)
 Frame = +3

Query: 489  KIQPELVLLYFGLVLTIPDMFQNTSSSYGIGPVQLMPYLCGETTEELTDEFIFKFLSEYQ 668
            K   ELVLLYFGLVLTIPDMFQNTSSSYGIGPVQLMPYLCGETTEELTDEFIFKFLSEYQ
Sbjct: 249  KDSTELVLLYFGLVLTIPDMFQNTSSSYGIGPVQLMPYLCGETTEELTDEFIFKFLSEYQ 308

Query: 669  EDLTPIFEPIFLDLIKILSTTTLTGNVFPYYKVFSRLVQFKAVSDLVGTLQCWNSPNFNG 848
            EDLTPIFEPIFLDLIKILSTTTLTGNVFPYYKVFSRLVQFKAVSDLV TLQCWNSPNFNG
Sbjct: 309  EDLTPIFEPIFLDLIKILSTTTLTGNVFPYYKVFSRLVQFKAVSDLVVTLQCWNSPNFNG 368

Query: 849  KEMERNTILGSLFSPSSASDDGSTIKQYFSNASTMNKNTIGDAFISIRQIQMNIHNGLVD 1028
            KEMERNTILGSLFSPSSASDDGSTIKQYFSNASTMNKNTIGDAFISIRQIQMNIHNGLVD
Sbjct: 369  KEMERNTILGSLFSPSSASDDGSTIKQYFSNASTMNKNTIGDAFISIRQIQMNIHNGLVD 428

Query: 1029 LLKGFLKVQQENKEAFLSWLASAVEKNLERNKLQVDRTKACSDGFXXXXXXXXXXXXEAF 1208
            LLKGFLKVQQENKEAFLSWLASAVEKNLERNKLQVDRTKACSDGF            EAF
Sbjct: 429  LLKGFLKVQQENKEAFLSWLASAVEKNLERNKLQVDRTKACSDGFALNLCAVLVLLCEAF 488

Query: 1209 VDIDCSKVSMVDTNFL 1256
            VDIDCSKVSMVDTNFL
Sbjct: 489  VDIDCSKVSMVDTNFL 504

 Score =  150 bits (379), Expect(2) = 4e-65
 Identities = 72/72 (100%), Positives = 72/72 (100%)
 Frame = +1

Query: 97  ITTNKPVTPTPITTNKPVAPAPTTKDSIRQCDIPMTESNYYVLEKIFLIYLQPNNNLPEK 276
           ITTNKPVTPTPITTNKPVAPAPTTKDSIRQCDIPMTESNYYVLEKIFLIYLQPNNNLPEK
Sbjct: 119 ITTNKPVTPTPITTNKPVAPAPTTKDSIRQCDIPMTESNYYVLEKIFLIYLQPNNNLPEK 178

Query: 277 SIYLPSVNEQIK 312
           SIYLPSVNEQIK
Sbjct: 179 SIYLPSVNEQIK 190

 Score =  122 bits (307), Expect(2) = 4e-65
 Identities = 63/72 (87%), Positives = 66/72 (91%)
 Frame = +2

Query: 305 KLK*EIKDGQLKLDKPVLDRILVERLSTKVQGVPAVEYLISCFNRIQQTIKKKMAIDQQI 484
           ++K EIKDGQLKLDKPVLDRILVERLSTKVQGVPAVEYLISCFNRIQQTIKKKMAIDQQI
Sbjct: 188 QIKEEIKDGQLKLDKPVLDRILVERLSTKVQGVPAVEYLISCFNRIQQTIKKKMAIDQQI 247

Query: 485 LKDSTRIGTFIF 520
           LKDST +    F
Sbjct: 248 LKDSTELVLLYF 259

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,720,405,741
Number of extensions: 32266353
Number of successful extensions: 90457
Number of sequences better than 10.0: 21
Number of HSP's gapped: 90286
Number of HSP's successfully gapped: 25
Length of query: 418
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 287
Effective length of database: 627,191,635
Effective search space: 180003999245
Effective search space used: 180003999245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.94  gvh: 0.64  alm: 0.23  top: 0.27  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U12765-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0