Contig-U12761-1
Contig ID Contig-U12761-1
Contig update 2002.12.18
Contig sequence
>Contig-U12761-1 (Contig-U12761-1Q) /CSM_Contig/Contig-U12761-1Q.Seq.d
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGC
CAATGCAAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTT
TAACCAATGCATCACAACAAAACTTTCCATTATTTATTCACTCATTAACA
TTAGAACTTACAAATGAAGAGAGAGATGTACAAATTCGTCAATTAGCAGG
TATTGTTTTAAAGAATAGTATTCACCCTAAAAATAGCGAAAGAAATGAAA
TTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCA
CACTGTAGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACG
CAATGTGGGAAGAATTAATCCCAGCATTATTTAAAAACATTGAAAGTGGT
TCAGAAGGTATTAAACAATCTACTCTTCAAACACTTGGTTATATTTGTGA
AGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTATTAAGAG
TTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGGT
ATTCAAGCATTATGCTTTGCATTAGAATGAATACATTTTAGATTATATGA
ATCCAATCTTTAAAGCAACAATTGATGCAATTCAAAATGATAANNNNNNN
NN

Gap no gap
Contig length 702
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U12761
List of clone(s)

est1=AHL743F,1,693
Translated Amino Acid sequence
d*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDV
QIRQLAGIVLKNSIHPKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVA
IVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDN
VLRVITDGIKDESQNVKLAGIQALCFALE*ihfrlyesnl*snn*cnsk**xxx


Translated Amino Acid sequence (All Frames)
Frame A:
d*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDV
QIRQLAGIVLKNSIHPKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVA
IVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDN
VLRVITDGIKDESQNVKLAGIQALCFALE*ihfrlyesnl*snn*cnsk**xxx


Frame B:
tnitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqmkremy
kfvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkhvtl*l
l*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkhlvifvkkliqmlcqniqim
y*ellqmvskmnhkm*n*qvfkhyalh*neyildymnpifkatidaiqndxxx


Frame C:
li*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk*rerct
nssisrycfke*ysp*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*stshcsy
cnftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssntwlyl*rn*skcyvkifr*c
iksyyrwyqr*itkckisryssimlcirmntf*ii*iqslkqqlmqfkmixxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12761-1 (Contig-U12761-1Q)
/CSM_Contig/Contig-U12761-1Q.Seq.d
(702 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12761-1 (Contig-U12761-1Q) /CSM_Contig/Conti... 1374 0.0
Contig-U12282-1 (Contig-U12282-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U10472-1 (Contig-U10472-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U09718-1 (Contig-U09718-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U05518-1 (Contig-U05518-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U02793-1 (Contig-U02793-1Q) /CSM_Contig/Conti... 34 0.19
Contig-U14330-1 (Contig-U14330-1Q) /CSM_Contig/Conti... 32 0.77
Contig-U13554-1 (Contig-U13554-1Q) /CSM_Contig/Conti... 32 0.77
Contig-U13395-1 (Contig-U13395-1Q) /CSM_Contig/Conti... 32 0.77
Contig-U12998-1 (Contig-U12998-1Q) /CSM_Contig/Conti... 32 0.77

>Contig-U12761-1 (Contig-U12761-1Q) /CSM_Contig/Contig-U12761-1Q.Seq.d
Length = 702

Score = 1374 bits (693), Expect = 0.0
Identities = 693/693 (100%)
Strand = Plus / Plus


Query: 1 gactaatataacatactccagtaaaaaatggatctttatcaagctttggccaatgcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactaatataacatactccagtaaaaaatggatctttatcaagctttggccaatgcaaat 60


Query: 61 catcaatctgaaagtgttcgttcagaagccgaatcatttttaaccaatgcatcacaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catcaatctgaaagtgttcgttcagaagccgaatcatttttaaccaatgcatcacaacaa 120


Query: 121 aactttccattatttattcactcattaacattagaacttacaaatgaagagagagatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactttccattatttattcactcattaacattagaacttacaaatgaagagagagatgta 180


Query: 181 caaattcgtcaattagcaggtattgttttaaagaatagtattcaccctaaaaatagcgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caaattcgtcaattagcaggtattgttttaaagaatagtattcaccctaaaaatagcgaa 240


Query: 241 agaaatgaaattttaattaaacaatgggcatcaattgaaccaaatgctagaaacgtcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaaatgaaattttaattaaacaatgggcatcaattgaaccaaatgctagaaacgtcatt 300


Query: 301 aaaaatactcttttacaaggtttaggatcaccaaaatatgaagcacgtcacactgtagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaatactcttttacaaggtttaggatcaccaaaatatgaagcacgtcacactgtagct 360


Query: 361 attgtaatttcacgtattggtcttattgaaattccatacgcaatgtgggaagaattaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgtaatttcacgtattggtcttattgaaattccatacgcaatgtgggaagaattaatc 420


Query: 421 ccagcattatttaaaaacattgaaagtggttcagaaggtattaaacaatctactcttcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccagcattatttaaaaacattgaaagtggttcagaaggtattaaacaatctactcttcaa 480


Query: 481 acacttggttatatttgtgaagaaattgatccaaatgttatgtcaaaatattcagataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acacttggttatatttgtgaagaaattgatccaaatgttatgtcaaaatattcagataat 540


Query: 541 gtattaagagttattacagatggtatcaaagatgaatcacaaaatgtaaaattagcaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtattaagagttattacagatggtatcaaagatgaatcacaaaatgtaaaattagcaggt 600


Query: 601 attcaagcattatgctttgcattagaatgaatacattttagattatatgaatccaatctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attcaagcattatgctttgcattagaatgaatacattttagattatatgaatccaatctt 660


Query: 661 taaagcaacaattgatgcaattcaaaatgataa 693
|||||||||||||||||||||||||||||||||
Sbjct: 661 taaagcaacaattgatgcaattcaaaatgataa 693


>Contig-U12282-1 (Contig-U12282-1Q) /CSM_Contig/Contig-U12282-1Q.Seq.d
Length = 1306

Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 499 gaagaaattgatccaaatg 517
|||||||||||||||||||
Sbjct: 101 gaagaaattgatccaaatg 119


>Contig-U10472-1 (Contig-U10472-1Q) /CSM_Contig/Contig-U10472-1Q.Seq.d
Length = 1091

Score = 38.2 bits (19), Expect = 0.012
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 670 aattgatgcaattcaaaatgata 692
|||||| ||||||||||||||||
Sbjct: 953 aattgaagcaattcaaaatgata 975


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9455
Number of Sequences: 6905
Number of extensions: 9455
Number of successful extensions: 974
Number of sequences better than 10.0: 115
length of query: 702
length of database: 5,674,871
effective HSP length: 16
effective length of query: 686
effective length of database: 5,564,391
effective search space: 3817172226
effective search space used: 3817172226
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 3
Homology vs DNA
Query= Contig-U12761-1 (Contig-U12761-1Q) /CSM_Contig/Contig-U12761-1Q.Seq.d
(702 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ336552) Dictyostelium discoideum cDNA clone:dda54f11, 5' ... 1374 0.0 1
(BJ427506) Dictyostelium discoideum cDNA clone:ddv62k17, 5' ... 1237 0.0 1
(BJ425205) Dictyostelium discoideum cDNA clone:ddv54p20, 5' ... 1237 0.0 1
(BJ425179) Dictyostelium discoideum cDNA clone:ddv54j24, 5' ... 1237 0.0 1
(BJ424831) Dictyostelium discoideum cDNA clone:ddv53a20, 5' ... 1237 0.0 1
(BJ422620) Dictyostelium discoideum cDNA clone:ddv46d16, 5' ... 1237 0.0 1
(BJ421652) Dictyostelium discoideum cDNA clone:ddv43k11, 5' ... 1237 0.0 1
(BJ419209) Dictyostelium discoideum cDNA clone:ddv35j12, 5' ... 1237 0.0 1
(BJ418511) Dictyostelium discoideum cDNA clone:ddv33b04, 5' ... 1237 0.0 1
(BJ396246) Dictyostelium discoideum cDNA clone:dds41n23, 5' ... 1237 0.0 1
(BJ395842) Dictyostelium discoideum cDNA clone:dds40k10, 5' ... 1237 0.0 1
(BJ395151) Dictyostelium discoideum cDNA clone:dds37f24, 5' ... 1237 0.0 1
(BJ390970) Dictyostelium discoideum cDNA clone:dds14o10, 5' ... 1237 0.0 1
(BJ371288) Dictyostelium discoideum cDNA clone:ddc57j11, 5' ... 1237 0.0 1
(BJ371029) Dictyostelium discoideum cDNA clone:ddc56k08, 5' ... 1237 0.0 1
(BJ370725) Dictyostelium discoideum cDNA clone:ddc55l05, 5' ... 1237 0.0 1
(BJ370687) Dictyostelium discoideum cDNA clone:ddc55d01, 5' ... 1237 0.0 1
(BJ365604) Dictyostelium discoideum cDNA clone:ddc35n23, 5' ... 1237 0.0 1
(BJ364321) Dictyostelium discoideum cDNA clone:ddc31f09, 5' ... 1237 0.0 1
(BJ364296) Dictyostelium discoideum cDNA clone:ddc31p01, 5' ... 1237 0.0 1
(BJ339096) Dictyostelium discoideum cDNA clone:dda64i04, 5' ... 1237 0.0 1
(BJ337882) Dictyostelium discoideum cDNA clone:dda59e10, 5' ... 1237 0.0 1
(BJ336686) Dictyostelium discoideum cDNA clone:dda54d21, 5' ... 1237 0.0 1
(BJ336610) Dictyostelium discoideum cDNA clone:dda54c15, 5' ... 1237 0.0 1
(BJ336533) Dictyostelium discoideum cDNA clone:dda54c07, 5' ... 1237 0.0 1
(BJ336458) Dictyostelium discoideum cDNA clone:dda54a03, 5' ... 1237 0.0 1
(BJ336342) Dictyostelium discoideum cDNA clone:dda53f18, 5' ... 1237 0.0 1
(BJ335280) Dictyostelium discoideum cDNA clone:dda49i17, 5' ... 1237 0.0 1
(BJ335153) Dictyostelium discoideum cDNA clone:dda49j05, 5' ... 1237 0.0 1
(BJ334989) Dictyostelium discoideum cDNA clone:dda48d16, 5' ... 1237 0.0 1
(BJ334954) Dictyostelium discoideum cDNA clone:dda48k10, 5' ... 1237 0.0 1
(BJ334037) Dictyostelium discoideum cDNA clone:dda44k24, 5' ... 1237 0.0 1
(BJ333772) Dictyostelium discoideum cDNA clone:dda43p24, 5' ... 1237 0.0 1
(BJ333745) Dictyostelium discoideum cDNA clone:dda43j23, 5' ... 1237 0.0 1
(BJ333676) Dictyostelium discoideum cDNA clone:dda43h18, 5' ... 1237 0.0 1
(BJ333660) Dictyostelium discoideum cDNA clone:dda43d16, 5' ... 1237 0.0 1
(BJ333145) Dictyostelium discoideum cDNA clone:dda41i13, 5' ... 1237 0.0 1
(BJ332991) Dictyostelium discoideum cDNA clone:dda41i01, 5' ... 1237 0.0 1
(BJ332810) Dictyostelium discoideum cDNA clone:dda40l23, 5' ... 1237 0.0 1
(BJ332645) Dictyostelium discoideum cDNA clone:dda39g22, 5' ... 1237 0.0 1
(BJ332168) Dictyostelium discoideum cDNA clone:dda38o06, 5' ... 1237 0.0 1
(BJ332162) Dictyostelium discoideum cDNA clone:dda38n05, 5' ... 1237 0.0 1
(BJ332155) Dictyostelium discoideum cDNA clone:dda38m01, 5' ... 1237 0.0 1
(BJ332110) Dictyostelium discoideum cDNA clone:dda38b06, 5' ... 1237 0.0 1
(BJ330459) Dictyostelium discoideum cDNA clone:dda31k15, 5' ... 1237 0.0 1
(BJ330176) Dictyostelium discoideum cDNA clone:dda27k13, 5' ... 1237 0.0 1
(BJ329259) Dictyostelium discoideum cDNA clone:dda24i10, 5' ... 1237 0.0 1
(BJ328833) Dictyostelium discoideum cDNA clone:dda29p16, 5' ... 1237 0.0 1
(BJ325442) Dictyostelium discoideum cDNA clone:dda14d16, 5' ... 1237 0.0 1
(BJ425592) Dictyostelium discoideum cDNA clone:ddv56a08, 5' ... 1235 0.0 1
(BJ369958) Dictyostelium discoideum cDNA clone:ddc52k14, 5' ... 1235 0.0 1
(BJ367474) Dictyostelium discoideum cDNA clone:ddc42i22, 5' ... 1235 0.0 1
(BJ339070) Dictyostelium discoideum cDNA clone:dda64d01, 5' ... 1235 0.0 1
(BJ337817) Dictyostelium discoideum cDNA clone:dda59g05, 5' ... 1235 0.0 1
(BJ337362) Dictyostelium discoideum cDNA clone:dda57l05, 5' ... 1235 0.0 1
(BJ335171) Dictyostelium discoideum cDNA clone:dda49o05, 5' ... 1235 0.0 1
(BJ421217) Dictyostelium discoideum cDNA clone:ddv41g05, 5' ... 1233 0.0 1
(BJ419995) Dictyostelium discoideum cDNA clone:ddv37k24, 5' ... 1233 0.0 1
(BJ419639) Dictyostelium discoideum cDNA clone:ddv36p18, 5' ... 1233 0.0 1
(BJ419383) Dictyostelium discoideum cDNA clone:ddv35n24, 5' ... 1233 0.0 1
(BJ397225) Dictyostelium discoideum cDNA clone:dds45e13, 5' ... 1233 0.0 1
(BJ392427) Dictyostelium discoideum cDNA clone:dds27j16, 5' ... 1233 0.0 1
(BJ338186) Dictyostelium discoideum cDNA clone:dda60n09, 5' ... 1233 0.0 1
(BJ337407) Dictyostelium discoideum cDNA clone:dda57g09, 5' ... 1233 0.0 1
(BJ333428) Dictyostelium discoideum cDNA clone:dda42p13, 5' ... 1233 0.0 1
(BJ333325) Dictyostelium discoideum cDNA clone:dda42d11, 5' ... 1233 0.0 1
(BJ333155) Dictyostelium discoideum cDNA clone:dda41k16, 5' ... 1233 0.0 1
(BJ332838) Dictyostelium discoideum cDNA clone:dda40c06, 5' ... 1233 0.0 1
(BJ424632) Dictyostelium discoideum cDNA clone:ddv53g01, 5' ... 1231 0.0 1
(BJ337195) Dictyostelium discoideum cDNA clone:dda56h18, 5' ... 1231 0.0 1
(BJ336144) Dictyostelium discoideum cDNA clone:dda52k21, 5' ... 1231 0.0 1
(BJ333536) Dictyostelium discoideum cDNA clone:dda43h05, 5' ... 1231 0.0 1
(BJ333090) Dictyostelium discoideum cDNA clone:dda41m11, 5' ... 1231 0.0 1
(BJ332856) Dictyostelium discoideum cDNA clone:dda40h05, 5' ... 1231 0.0 1
(BJ325508) Dictyostelium discoideum cDNA clone:dda14k23, 5' ... 1231 0.0 1
(BJ427657) Dictyostelium discoideum cDNA clone:ddv63l02, 5' ... 1229 0.0 1
(BJ427390) Dictyostelium discoideum cDNA clone:ddv62d08, 5' ... 1229 0.0 1
(BJ427316) Dictyostelium discoideum cDNA clone:ddv62d05, 5' ... 1229 0.0 1
(BJ427221) Dictyostelium discoideum cDNA clone:ddv61o16, 5' ... 1229 0.0 1
(BJ426841) Dictyostelium discoideum cDNA clone:ddv60m11, 5' ... 1229 0.0 1
(BJ421741) Dictyostelium discoideum cDNA clone:ddv43m18, 5' ... 1229 0.0 1
(BJ418524) Dictyostelium discoideum cDNA clone:ddv33e05, 5' ... 1229 0.0 1
(BJ418460) Dictyostelium discoideum cDNA clone:ddv32g24, 5' ... 1229 0.0 1
(BJ418290) Dictyostelium discoideum cDNA clone:ddv32b12, 5' ... 1229 0.0 1
(BJ395132) Dictyostelium discoideum cDNA clone:dds37b21, 5' ... 1229 0.0 1
(BJ389485) Dictyostelium discoideum cDNA clone:dds18m23, 5' ... 1229 0.0 1
(BJ370911) Dictyostelium discoideum cDNA clone:ddc55m22, 5' ... 1229 0.0 1
(BJ370776) Dictyostelium discoideum cDNA clone:ddc55i12, 5' ... 1229 0.0 1
(BJ339536) Dictyostelium discoideum cDNA clone:dda65o14, 5' ... 1229 0.0 1
(BJ338163) Dictyostelium discoideum cDNA clone:dda60h09, 5' ... 1229 0.0 1
(BJ337576) Dictyostelium discoideum cDNA clone:dda57o23, 5' ... 1229 0.0 1
(BJ336520) Dictyostelium discoideum cDNA clone:dda54o02, 5' ... 1229 0.0 1
(BJ336440) Dictyostelium discoideum cDNA clone:dda53m21, 5' ... 1229 0.0 1
(BJ336269) Dictyostelium discoideum cDNA clone:dda53f12, 5' ... 1229 0.0 1
(BJ336217) Dictyostelium discoideum cDNA clone:dda53k03, 5' ... 1229 0.0 1
(BJ336192) Dictyostelium discoideum cDNA clone:dda53f04, 5' ... 1229 0.0 1
(BJ335999) Dictyostelium discoideum cDNA clone:dda52h10, 5' ... 1229 0.0 1
(BJ334900) Dictyostelium discoideum cDNA clone:dda48p03, 5' ... 1229 0.0 1
(BJ334848) Dictyostelium discoideum cDNA clone:dda48d03, 5' ... 1229 0.0 1
(BJ333577) Dictyostelium discoideum cDNA clone:dda43a10, 5' ... 1229 0.0 1

>(BJ336552) Dictyostelium discoideum cDNA clone:dda54f11, 5' end,
single read.
Length = 693

Score = 1374 bits (693), Expect = 0.0
Identities = 693/693 (100%)
Strand = Plus / Plus


Query: 1 gactaatataacatactccagtaaaaaatggatctttatcaagctttggccaatgcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactaatataacatactccagtaaaaaatggatctttatcaagctttggccaatgcaaat 60


Query: 61 catcaatctgaaagtgttcgttcagaagccgaatcatttttaaccaatgcatcacaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catcaatctgaaagtgttcgttcagaagccgaatcatttttaaccaatgcatcacaacaa 120


Query: 121 aactttccattatttattcactcattaacattagaacttacaaatgaagagagagatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactttccattatttattcactcattaacattagaacttacaaatgaagagagagatgta 180


Query: 181 caaattcgtcaattagcaggtattgttttaaagaatagtattcaccctaaaaatagcgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caaattcgtcaattagcaggtattgttttaaagaatagtattcaccctaaaaatagcgaa 240


Query: 241 agaaatgaaattttaattaaacaatgggcatcaattgaaccaaatgctagaaacgtcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaaatgaaattttaattaaacaatgggcatcaattgaaccaaatgctagaaacgtcatt 300


Query: 301 aaaaatactcttttacaaggtttaggatcaccaaaatatgaagcacgtcacactgtagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaatactcttttacaaggtttaggatcaccaaaatatgaagcacgtcacactgtagct 360


Query: 361 attgtaatttcacgtattggtcttattgaaattccatacgcaatgtgggaagaattaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgtaatttcacgtattggtcttattgaaattccatacgcaatgtgggaagaattaatc 420


Query: 421 ccagcattatttaaaaacattgaaagtggttcagaaggtattaaacaatctactcttcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccagcattatttaaaaacattgaaagtggttcagaaggtattaaacaatctactcttcaa 480


Query: 481 acacttggttatatttgtgaagaaattgatccaaatgttatgtcaaaatattcagataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acacttggttatatttgtgaagaaattgatccaaatgttatgtcaaaatattcagataat 540


Query: 541 gtattaagagttattacagatggtatcaaagatgaatcacaaaatgtaaaattagcaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtattaagagttattacagatggtatcaaagatgaatcacaaaatgtaaaattagcaggt 600


Query: 601 attcaagcattatgctttgcattagaatgaatacattttagattatatgaatccaatctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attcaagcattatgctttgcattagaatgaatacattttagattatatgaatccaatctt 660


Query: 661 taaagcaacaattgatgcaattcaaaatgataa 693
|||||||||||||||||||||||||||||||||
Sbjct: 661 taaagcaacaattgatgcaattcaaaatgataa 693

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 910,117,452
Number of extensions: 56210018
Number of successful extensions: 4373079
Number of sequences better than 10.0: 613
Length of query: 702
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 678
Effective length of database: 97,308,875,965
Effective search space: 65975417904270
Effective search space used: 65975417904270
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 4
Homology vs Protein
Query= Contig-U12761-1 (Contig-U12761-1Q) /CSM_Contig/Contig-U12761-1Q.Seq.d
(702 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001327_234(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 125 2e-27
AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo... 124 3e-27
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin... 115 1e-24
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 115 1e-24
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl... 114 2e-24
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C... 114 2e-24
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 114 2e-24
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo... 111 2e-23
BX842622_14(BX842622|pid:none) Neurospora crassa DNA linkage gro... 110 4e-23
CR382135_96(CR382135|pid:none) Debaryomyces hansenii strain CBS7... 107 3e-22
AF003136_1(AF003136|pid:none) Caenorhabditis elegans cosmid F28B... 107 3e-22
AY303543_1(AY303543|pid:none) Emericella nidulans putative karyo... 107 5e-22
(P52296) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 105 1e-21
AM502252_51(AM502252|pid:none) Leishmania infantum chromosome 34. 100 3e-20
FN392322_265(FN392322|pid:none) Pichia pastoris GS115 chromosome... 99 1e-19
DQ072162_1(DQ072162|pid:none) Aplysia californica importin beta ... 97 4e-19
BC107501_1(BC107501|pid:none) Danio rerio karyopherin (importin)... 96 1e-18
AM494957_47(AM494957|pid:none) Leishmania braziliensis chromosom... 96 1e-18
FN357382_14(FN357382|pid:none) Schistosoma mansoni genome sequen... 95 2e-18
AP007151_972(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 92 1e-17
(O18388) RecName: Full=Importin subunit beta; AltName: Full=Kary... 90 6e-17
CP000582_69(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 90 8e-17
CR382122_234(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 89 1e-16
CR380953_40(CR380953|pid:none) Candida glabrata strain CBS138 ch... 87 6e-16
CU928171_741(CU928171|pid:none) Kluyveromyces thermotolerans str... 87 6e-16
CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 86 1e-15
AJ002729_1(AJ002729|pid:none) Drosophila melanogaster ketel gene. 84 3e-15
CR382130_499(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 83 7e-15
CU928173_528(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 80 6e-14
AF374376_17(AF374376|pid:none) Oikopleura dioica clone BAC clone... 76 1e-12
AE016816_19(AE016816|pid:none) Ashbya gossypii (= Eremothecium g... 75 3e-12
AM055942_160(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 75 3e-12
AL844507_143(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 70 5e-11
FM992688_747(FM992688|pid:none) Candida dubliniensis CD36 chromo... 61 3e-08
(Q55CQ7) RecName: Full=Transportin; AltName: Full=Importin subun... 61 3e-08
CP000882_160(CP000882|pid:none) Hemiselmis andersenii chromosome... 59 1e-07
CR380953_142(CR380953|pid:none) Candida glabrata strain CBS138 c... 58 3e-07
BT062810_1(BT062810|pid:none) Zea mays full-length cDNA clone ZM... 56 9e-07
(P40069) RecName: Full=Importin subunit beta-4; AltName: Full=Ka... 56 1e-06
CR940347_1084(CR940347|pid:none) Theileria annulata strain Ankar... 54 4e-06
AC005167_13(AC005167|pid:none) Arabidopsis thaliana chromosome 2... 54 5e-06
CR382132_607(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 54 5e-06
CR382135_476(CR382135|pid:none) Debaryomyces hansenii strain CBS... 54 5e-06
AE016820_73(AE016820|pid:none) Ashbya gossypii (= Eremothecium g... 54 6e-06
AK299145_1(AK299145|pid:none) Homo sapiens cDNA FLJ50625 complet... 52 1e-05
AK316421_1(AK316421|pid:none) Homo sapiens cDNA, FLJ79320 comple... 52 2e-05
CR382136_177(CR382136|pid:none) Debaryomyces hansenii strain CBS... 51 3e-05
FN357418_19(FN357418|pid:none) Schistosoma mansoni genome sequen... 51 4e-05
AM437344_1(AM437344|pid:none) Vitis vinifera contig VV78X175554.... 50 5e-05
AJ010592_47(AJ010592|pid:none) Guillardia theta DNA for complete... 50 7e-05
(O14089) RecName: Full=Importin subunit beta-2; AltName: Full=Ka... 50 7e-05
CR382131_506(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 49 2e-04
CP001324_701(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 49 2e-04
AE017345_111(AE017345|pid:none) Cryptococcus neoformans var. neo... 49 2e-04
BC068908_1(BC068908|pid:none) Xenopus laevis hypothetical protei... 49 2e-04
AC135206_1(AC135206|pid:none) Oryza sativa (japonica cultivar-gr... 49 2e-04
AM910993_216(AM910993|pid:none) Plasmodium knowlesi strain H chr... 48 3e-04
BC168434_1(BC168434|pid:none) Xenopus tropicalis importin 11, mR... 47 4e-04
AL606656_5(AL606656|pid:none) Oryza sativa genomic DNA, chromoso... 47 7e-04
AP008210_2372(AP008210|pid:none) Oryza sativa (japonica cultivar... 47 7e-04
BC080218_1(BC080218|pid:none) Danio rerio transportin 2 (importi... 46 0.001
AM425954_1(AM425954|pid:none) Vitis vinifera contig VV78X232329.... 46 0.001
(Q9UI26) RecName: Full=Importin-11; Short=Imp11; AltNam... 45 0.003
AE014296_1166(AE014296|pid:none) Drosophila melanogaster chromos... 45 0.003
CR954214_206(CR954214|pid:none) Ostreococcus tauri strain OTTH05... 45 0.003
(Q54EW3) RecName: Full=Probable importin-5 homolog; AltName: Ful... 45 0.003
CU928167_261(CU928167|pid:none) Kluyveromyces thermotolerans str... 45 0.003
AY118705_1(AY118705|pid:none) Drosophila melanogaster AT21921 fu... 45 0.003
AK001696_1(AK001696|pid:none) Homo sapiens cDNA FLJ10834 fis, cl... 45 0.003
AK154985_1(AK154985|pid:none) Mus musculus NOD-derived CD11c +ve... 44 0.006
BC018314_1(BC018314|pid:none) Homo sapiens transportin 2, mRNA (... 44 0.006
AK155760_1(AK155760|pid:none) Mus musculus B6-derived CD11 +ve d... 44 0.006
BC072420_1(BC072420|pid:none) Homo sapiens transportin 2, mRNA (... 44 0.006
AF007748_1(AF007748|pid:none) Homo sapiens karyopherin beta2b ho... 44 0.006
AB384365_1(AB384365|pid:none) Synthetic construct DNA, clone: pF... 44 0.006
BC112762_1(BC112762|pid:none) Bos taurus transportin 2, mRNA (cD... 44 0.006
CU928175_49(CU928175|pid:none) Zygosaccharomyces rouxii strain C... 43 0.011
AE014296_1163(AE014296|pid:none) Drosophila melanogaster chromos... 42 0.014
BT003191_1(BT003191|pid:none) Drosophila melanogaster RE59670 fu... 42 0.014
AF059613_1(AF059613|pid:none) Drosophila melanogaster transporti... 42 0.014
CP001331_232(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 41 0.031
T23948(T23948) hypothetical protein R06A4.4a - Caenorhabditis el... 40 0.069
A85829(A85829) fucose synthetase [imported] - Escherichia coli (... 40 0.090
AF061251_8(AF061251|pid:none) Eschericia coli serotype O157:H7 O... 40 0.090
FN392319_725(FN392319|pid:none) Pichia pastoris GS115 chromosome... 39 0.12
BC084978_1(BC084978|pid:none) Xenopus laevis hypothetical LOC495... 38 0.26
BC084944_1(BC084944|pid:none) Xenopus laevis hypothetical LOC495... 38 0.34
T28923(T28923)hypothetical protein C48B6.6 - Caenorhabditis eleg... 38 0.34
U97189_3(U97189|pid:none) Caenorhabditis elegans cosmid C48B6, c... 38 0.34
AK299485_1(AK299485|pid:none) Homo sapiens cDNA FLJ54538 complet... 38 0.34
(O01510) RecName: Full=Serine/threonine-protein kinase smg-1; ... 38 0.34
(Q8BFY9) RecName: Full=Transportin-1; AltName: Full=Importin bet... 37 0.45
AK167049_1(AK167049|pid:none) Mus musculus blastocyst blastocyst... 37 0.45
U70322_1(U70322|pid:none) Human transportin (TRN) mRNA, complete... 37 0.45
(Q92973) RecName: Full=Transportin-1; AltName: Full=Importin bet... 37 0.45
AK029953_1(AK029953|pid:none) Mus musculus adult male testis cDN... 37 0.45
BC103374_1(BC103374|pid:none) Bos taurus transportin 1, mRNA (cD... 37 0.45
AE014134_2355(AE014134|pid:none) Drosophila melanogaster chromos... 37 0.58
AC171267_15(AC171267|pid:none) Medicago truncatula clone mth2-17... 37 0.58
PDBN(1QBK)B MOL_ID: 1;MOL_ID: 1; MOLECULE: KARYOPHERIN BETA2; MO... 37 0.58
CR940347_895(CR940347|pid:none) Theileria annulata strain Ankara... 36 1.00
(A5UHC9) RecName: Full=UPF0274 protein CGSHiGG_06450; &CP000672... 36 1.00
CP000053_1122(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 36 1.00
EU180848_1(EU180848|pid:none) Boechera divaricarpa clone BAC45b2... 36 1.3
AM920427_331(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 36 1.3
CP000500_677(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 35 1.7
(P44796) RecName: Full=UPF0274 protein HI0638; &I64155(I64155) ... 35 1.7
CP000767_1163(CP000767|pid:none) Campylobacter curvus 525.92, co... 35 1.7
U72395_1(U72395|pid:none) Homo sapiens MIP mRNA, complete cds. 35 2.2
CR382138_118(CR382138|pid:none) Debaryomyces hansenii strain CBS... 35 2.2
AM910992_299(AM910992|pid:none) Plasmodium knowlesi strain H chr... 35 2.2
AB170846_1(AB170846|pid:none) Macaca fascicularis brain cDNA clo... 35 2.9
(O60518) RecName: Full=Ran-binding protein 6; Short=Ran... 35 2.9
AC006193_10(AC006193|pid:none) Arabidopsis thaliana chromosome I... 35 2.9
AM168274_1(AM168274|pid:none) Gibberella fujikuroi tor gene for ... 34 3.8
CP000127_1504(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 34 3.8
(A5UE98) RecName: Full=UPF0274 protein CGSHiEE_09030; &CP000671... 34 3.8
(Q8D4N8) RecName: Full=Ribosomal protein S12 methylthiotransfera... 34 4.9
AY730592_9(AY730592|pid:none) Citrobacter freundii serotype 90 U... 34 4.9
CP001233_2499(CP001233|pid:none) Vibrio cholerae M66-2 chromosom... 34 4.9
CP000822_706(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,... 34 4.9
(A5F514) RecName: Full=Ribosomal protein S12 methylthiotransfera... 34 4.9
(Q7MG88) RecName: Full=Ribosomal protein S12 methylthiotransfera... 34 4.9
AB000623_1(AB000623|pid:none) Nicotiana tabacum mRNA for glucosy... 34 4.9
(A5WGF2) RecName: Full=Ribosomal protein S12 methylthiotransfera... 34 4.9
CP000597_103(CP000597|pid:none) Ostreococcus lucimarinus CCE9901... 34 4.9
AK170420_1(AK170420|pid:none) Mus musculus NOD-derived CD11c +ve... 33 6.5
AB029342_1(AB029342|pid:none) Rattus norvegicus mRNA for TIP120-... 33 6.5
AK145112_1(AK145112|pid:none) Mus musculus mammary gland RCB-052... 33 6.5
CP000479_1222(CP000479|pid:none) Mycobacterium avium 104, comple... 33 6.5
BC056365_1(BC056365|pid:none) Mus musculus cullin-associated and... 33 6.5
(Q9R0L4) RecName: Full=Cullin-associated NEDD8-dissociated prote... 33 6.5
AP008209_2460(AP008209|pid:none) Oryza sativa (japonica cultivar... 33 8.4
CP001344_1822(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 33 8.4
BC136592_1(BC136592|pid:none) Homo sapiens cullin-associated and... 33 8.4
AP000736_1(AP000736|pid:none) Arabidopsis thaliana genomic DNA, ... 33 8.4
AK132870_1(AK132870|pid:none) Mus musculus adult male testis cDN... 33 8.4
AY035044_1(AY035044|pid:none) Arabidopsis thaliana unknown prote... 33 8.4
BC112672_1(BC112672|pid:none) Bos taurus testis expressed 10, mR... 33 8.4
AB014567_1(AB014567|pid:none) Homo sapiens mRNA for KIAA0667 pro... 33 8.4
FN318261_1(FN318261|pid:none) Schistosoma japonicum isolate Anhu... 33 8.4
AC146936_30(AC146936|pid:none) Oryza sativa (japonica cultivar-g... 33 8.4

>CP001327_234(CP001327|pid:none) Micromonas sp. RCC299 chromosome 6,
complete sequence.
Length = 876

Score = 125 bits (313), Expect = 2e-27
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 3/201 (1%)
Frame = +1

Query: 31 DLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDVQIRQLAGIVL 210
D+ L+ + R AE+ L A +QN F+ SL E+ E + + R+LAG++L
Sbjct: 3 DITAVLSATTSPDAATREAAEAQLKQAQEQNLGAFLQSLANEVATEAKPLDSRRLAGLIL 62

Query: 211 KNSIHPKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVAIVISRIGLIE 390
KN++ ++ ++W +++ N RN +K + LGSP E RHT A VI++I E
Sbjct: 63 KNALDARDETVKADKQEKWVTMDANIRNTVKGCVWNQLGSPVQEIRHTCAQVIAKIAGAE 122

Query: 391 IPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDN-VLRVITDGI 567
+P A+W L+ L N+ +G G +QSTL+ LGYICEEI+ + + N +L I G+
Sbjct: 123 MPKALWPSLVTDLQNNMATGDPGKRQSTLEALGYICEEIEHEHLQEADVNAMLTAIVQGM 182

Query: 568 K--DESQNVKLAGIQALCFAL 624
+ +ES ++LA AL A+
Sbjct: 183 RKEEESNEIRLAATNALVNAM 203

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,012,577,531
Number of extensions: 18286756
Number of successful extensions: 41934
Number of sequences better than 10.0: 142
Number of HSP's gapped: 41847
Number of HSP's successfully gapped: 142
Length of query: 234
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 109
Effective length of database: 646,610,989
Effective search space: 70480597801
Effective search space used: 70480597801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.76 gvh: 0.42 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for Contig-U12761-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0