Contig-U12759-1
Contig ID Contig-U12759-1
Contig update 2002.12.18
Contig sequence
>Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Contig-U12759-1Q.Seq.d
ATCAAACTCTCCCACTTTTATTAAATAATAATAATACATACAAATATATT
TACACATATATATAAATAATGCAATCTATTGTAAAAAAAGATTTGGATTT
ACCAACATTAAGAAATGAATCAAGTAATGTTAAAGGATTATCACATCCAG
TTGAAAGTATTCAATTAGATCAAGGTAAAACAGAAATAAAATTAAAAAAT
TTTGCAATGATAAAATGTTTTCGGTACACATATGGTTATGAATAATGAAA
TTGAAAAACAAATTTATTCACAATTTAAAAGATTACCAACTTTACAAAGT
TCAATGGTTGGTTTAGAAACAATTTTAGGTTTAGATGAAGATTTCGATTT
TGGTGATTATCTTTGTGATCCAGCCACATCAGAAGCACCATTACCACAAT
TACATACATCTATGGAGCATAGACGTGGTATGACTAGTTCCAAGAGTATT
TTATAGATAAATTATCCATTCATAAATATATAAAACCGCACCACCACCAT
CATCATCATCGTCATCACCACCACCATTACCAAATATTGTCATTATAATA
AATCAGCATTACTTANAAAAAAAA

Gap no gap
Contig length 574
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 985533
End point 984960
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U12759
List of clone(s)

est1=VHP445F,1,574
est2=AHL548Z,7,287
Translated Amino Acid sequence
iklshfy*iiiihtnifthiyk*cnll*kkiwiyqh*emnqvmlkdyhiqlkvfn*ikvk
qk*n*kilq**NVFGTHMVMNNEIEKQIYSQFKRLPTLQSSMVGLETILGLDEDFDFGDY
LCDPATSEAPLPQLHTSMEHRRGMTSSKSIL*inypfini*nrtttiiiivitttitkyc
hynksallxkk


Translated Amino Acid sequence (All Frames)
Frame A:
iklshfy*iiiihtnifthiyk*cnll*kkiwiyqh*emnqvmlkdyhiqlkvfn*ikvk
qk*n*kilq**NVFGTHMVMNNEIEKQIYSQFKRLPTLQSSMVGLETILGLDEDFDFGDY
LCDPATSEAPLPQLHTSMEHRRGMTSSKSIL*inypfini*nrtttiiiivitttitkyc
hynksallxkk


Frame B:
snsptfik***yiqiylhiyinnaiyckkrfgftnikk*ik*c*riitss*kysirsr*n
rnkikkfcndkmfsvhiwl*imklknkfihnlkdyqlykvqwlv*kqf*v*mkisilvii
fviqphqkhhyhnyihlwsidvv*lvprvfyr*iihs*iyktapppssssssppplpniv
iiinqhylxkk


Frame C:
qtlplllnnnntykyiytyi*imqsivkkdldlptlrnessnvkglshpvesiqldqgkt
eiklknfamikcfrytygye**n*ktnlfti*kitnftkfngwfrnnfrfr*rfrfw*ls
l*sshirstittityiyga*twyd*fqeyfidklsihkyikphhhhhhhrhhhhhyqils
l**isitxkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12759-1 (Contig-U12759-1Q)
/CSM_Contig/Contig-U12759-1Q.Seq.d
(574 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Conti... 791 0.0
Contig-U03642-1 (Contig-U03642-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U04331-1 (Contig-U04331-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U14466-1 (Contig-U14466-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U11336-1 (Contig-U11336-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U05317-1 (Contig-U05317-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U04923-1 (Contig-U04923-1Q) /CSM_Contig/Conti... 36 0.040

>Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Contig-U12759-1Q.Seq.d
Length = 574

Score = 791 bits (399), Expect = 0.0
Identities = 413/420 (98%)
Strand = Plus / Plus


Query: 65 aataatgcaatctattgtnnnnnnngatttggatttaccaacattaagaaatgaatcaag 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 65 aataatgcaatctattgtaaaaaaagatttggatttaccaacattaagaaatgaatcaag 124


Query: 125 taatgttaaaggattatcacatccagttgaaagtattcaattagatcaaggtaaaacaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 taatgttaaaggattatcacatccagttgaaagtattcaattagatcaaggtaaaacaga 184


Query: 185 aataaaattaaaaaattttgcaatgataaaatgttttcggtacacatatggttatgaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aataaaattaaaaaattttgcaatgataaaatgttttcggtacacatatggttatgaata 244


Query: 245 atgaaattgaaaaacaaatttattcacaatttaaaagattaccaactttacaaagttcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgaaattgaaaaacaaatttattcacaatttaaaagattaccaactttacaaagttcaa 304


Query: 305 tggttggtttagaaacaattttaggtttagatgaagatttcgattttggtgattatcttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggttggtttagaaacaattttaggtttagatgaagatttcgattttggtgattatcttt 364


Query: 365 gtgatccagccacatcagaagcaccattaccacaattacatacatctatggagcatagac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgatccagccacatcagaagcaccattaccacaattacatacatctatggagcatagac 424


Query: 425 gtggtatgactagttccaagagtattttatagataaattatccattcataaatatataaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtggtatgactagttccaagagtattttatagataaattatccattcataaatatataaa 484


Score = 65.9 bits (33), Expect = 4e-11
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 533 aatattgtcattataataaatcagcattactta 565
|||||||||||||||||||||||||||||||||
Sbjct: 533 aatattgtcattataataaatcagcattactta 565


Score = 36.2 bits (18), Expect = 0.040
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1 atcaaactctcccacttt 18
||||||||||||||||||
Sbjct: 1 atcaaactctcccacttt 18


>Contig-U03642-1 (Contig-U03642-1Q) /CSM_Contig/Contig-U03642-1Q.Seq.d
Length = 512

Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 177 aaaacagaaataaaattaaaaaat 200
|||||| |||||||||||||||||
Sbjct: 388 aaaacaaaaataaaattaaaaaat 365


>Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Contig-U12384-1Q.Seq.d
Length = 1671

Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 240 gaataatgaaattgaaaaa 258
|||||||||||||||||||
Sbjct: 253 gaataatgaaattgaaaaa 271


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,071
Number of Sequences: 6905
Number of extensions: 10071
Number of successful extensions: 1408
Number of sequences better than 10.0: 526
length of query: 574
length of database: 5,674,871
effective HSP length: 16
effective length of query: 558
effective length of database: 5,564,391
effective search space: 3104930178
effective search space used: 3104930178
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 3
Homology vs DNA
Query= Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Contig-U12759-1Q.Seq.d
(574 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427129) Dictyostelium discoideum cDNA clone:ddv61j12, 5' ... 549 0.0 4
(BJ354694) Dictyostelium discoideum cDNA clone:dda54o11, 3' ... 347 7e-93 2
(EJ280539) 1095366052282 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.022 1
(AC179761) Strongylocentrotus purpuratus clone R3-1016N15, W... 44 0.051 3
(BX323587) Zebrafish DNA sequence from clone CH211-100L3. 46 0.073 2
(EJ569581) 1092960023405 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.085 3
(CR774183) Zebrafish DNA sequence from clone CH211-190A18 in... 50 0.088 1
(CV008080) zfi01-2ms1-g10 Zfi01 Zamia fischeri cDNA clone zf... 50 0.088 1
(BX465193) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.12 2
(CU856599) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.20 2
(AC214420) Populus trichocarpa clone POP111-L12, complete se... 38 0.21 2
(AC214631) Populus trichocarpa clone POP071-C21, complete se... 48 0.25 2
(AC010197) Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (R... 38 0.32 4
(AM435315) Vitis vinifera contig VV78X252702.12, whole genom... 48 0.33 3
(AU269110) Dictyostelium discoideum vegetative cDNA clone:VS... 48 0.35 1
(FC763257) CBBN13813.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 48 0.35 1
(CR848038) Chlamydophila abortus strain S26/3, complete genome. 48 0.35 1
(AC087279) Homo sapiens chromosome 11, clone RP11-559I10, co... 42 0.51 2
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.64 7
(EK118381) 1092963279925 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.79 2
(CN708290) E0544E10-5 NIA Mouse eight-cell-Embryo cDNA libra... 34 0.98 2
(DX525408) GH_MBb0021N03f GH_MBb Gossypium hirsutum genomic ... 40 1.0 2
(AC160004) Bos taurus clone CH240-82A15, WORKING DRAFT SEQUE... 36 1.3 6
(BX546452) Zebrafish DNA sequence from clone DKEYP-8B11 in l... 46 1.4 1
(BX530027) Zebrafish DNA sequence from clone DKEYP-81G7 in l... 46 1.4 1
(BX004889) Zebrafish DNA sequence from clone DKEY-65P15 in l... 46 1.4 1
(AB217044) Equus caballus DNA, microsatellite TKY3101. 46 1.4 1
(AC150237) Papio anubis clone RP41-59A12, WORKING DRAFT SEQU... 46 1.4 1
(AC141758) Apis mellifera clone CH224-60D16, WORKING DRAFT S... 46 1.4 1
(AC141052) Rattus norvegicus clone CH230-420E24, WORKING DRA... 46 1.4 1
(AC133670) Rattus norvegicus clone CH230-230B11, *** SEQUENC... 46 1.4 1
(AC129743) Rattus norvegicus clone CH230-31G7, WORKING DRAFT... 46 1.4 1
(CU915622) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(BX957293) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1
(AC203346) Macaca mulatta clone CH250-339G21, WORKING DRAFT ... 46 1.4 1
(BH535058) BOGJH90TF BOGJ Brassica oleracea genomic clone BO... 46 1.4 1
(EK171938) 1095458079262 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EJ636662) 1093000801636 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1
(EJ611784) 1092962050021 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1
(ED075246) AUAC-aap44c07.b1 Ascaris suum whole genome shotgu... 46 1.4 1
(AJ584111) Equus caballus GSS, BAC clone CH241-102E10, T7 en... 46 1.4 1
(EH685771) CCIM10563.b1_E02.ab1 CCI(LMS) chicory Cichorium i... 46 1.4 1
(EG319244) MSAM303398_3680_0204 LCM-dissected maize inbred l... 46 1.4 1
(DT211986) N121_E06 Non embryogenic SSH library Cichorium in... 46 1.4 1
(AC155838) Mus musculus 6 BAC RP24-441P8 (Roswell Park Cance... 44 2.0 2
(AC161925) Mus musculus chromosome 18 clone RP23-59L5 map 18... 40 2.1 2
(BM170222) EST572745 PyBS Plasmodium yoelii yoelii cDNA clon... 36 2.2 2
(BM160629) EST563152 PyBS Plasmodium yoelii yoelii cDNA clon... 36 2.3 2
(ER573240) 1093015801398 Global-Ocean-Sampling_GS-36-01-01-2... 38 2.4 2
(AC160352) Bos taurus clone CH240-91G12, WORKING DRAFT SEQUE... 40 2.7 4
(AC154283) Mus musculus BAC clone RP24-279H4 from chromosome... 34 2.7 2
(AC165163) Mus musculus BAC clone RP23-146B12 from chromosom... 34 2.7 2
(AC149353) Phakopsora pachyrhizi clone JGIAFNA-41F11, comple... 34 2.9 2
(EJ493137) 1095403555553 Global-Ocean-Sampling_GS-28-01-01-1... 38 3.0 2
(DQ889679) Bacillus cereus strain G9241 plasmid pBC210, comp... 38 3.0 6
(CZ865165) OC__Ba0260G06.f OC__Ba Oryza coarctata genomic cl... 38 3.0 2
(EJ682363) 1092955140348 Global-Ocean-Sampling_GS-30-02-01-1... 34 3.0 2
(AM476477) Vitis vinifera contig VV78X119783.11, whole genom... 32 3.1 3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 3.2 6
(EJ483006) 1095403482079 Global-Ocean-Sampling_GS-28-01-01-1... 38 3.2 2
(DX573474) Phaseolus-Bat-7_02_M10.T3 Phaseolus-Bat-7 Phaseol... 42 3.3 2
(AC175518) Bos taurus clone CH240-209I21, WORKING DRAFT SEQU... 44 3.5 5
(EJ391940) 1092963953440 Global-Ocean-Sampling_GS-28-01-01-1... 32 3.6 2
(CB247502) UI-M-FI0-cdz-j-22-0-UI.r1 NIH_BMAP_FI0 Mus muscul... 34 3.6 2
(AC079256) Homo sapiens BAC clone RP11-325I24 from 2, comple... 38 3.6 4
(CU062485) Zebrafish DNA sequence from clone CH73-353H16 in ... 42 3.9 3
(AC213016) Populus trichocarpa clone POP038-D19, complete se... 40 4.2 5
(AX344305) Sequence 152 from Patent WO0200926. 36 4.3 2
(CU915598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 4.6 3
(BM168820) EST571343 PyBS Plasmodium yoelii yoelii cDNA clon... 34 4.8 2
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 4.9 6
(CR388209) Zebrafish DNA sequence from clone DKEY-25C4 in li... 44 5.4 1
(BX323030) Zebrafish DNA sequence from clone DKEYP-77D7 in l... 44 5.4 1
(AC145948) Gallus gallus BAC clone CH261-24O17 from chromoso... 44 5.4 1
(AL935055) Mouse DNA sequence from clone RP23-131J21 on chro... 44 5.4 1
(AC115847) Mus musculus chromosome 5, clone RP24-245J15, com... 44 5.4 1
(AC215622) Populus trichocarpa clone ACSB2349-D05, complete ... 44 5.4 1
(AC187862) Populus trichocarpa clone Pop1-1L5, complete sequ... 44 5.4 1
(AC182707) Populus trichocarpa clone Pop1-80E22, complete se... 44 5.4 1
(AL139189) Human DNA sequence from clone RP11-94F16 on chrom... 44 5.4 1
(AC107956) Homo sapiens chromosome 11, clone RP11-452G18, co... 44 5.4 1
(AC003690) Human Chromosome 11 pac pDJ169p3, complete sequence. 44 5.4 1
(AC103209) Rattus norvegicus clone CH230-35H18, *** SEQUENCI... 44 5.4 1
(CU659418) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.4 1
(AC034296) Homo sapiens chromosome 13 clone RP11-438I6 map 1... 44 5.4 1
(AC185865) Bos taurus clone RP42-89E10, WORKING DRAFT SEQUEN... 44 5.4 1
(AC180818) Strongylocentrotus purpuratus clone R3-3071B18, W... 44 5.4 1
(AC024240) Homo sapiens chromosome 11 clone RP11-498A15, WOR... 44 5.4 1
(BH403129) AG-ND-171O1.TF ND-TAM Anopheles gambiae genomic c... 44 5.4 1
(BH376243) AG-ND-178B12.TR ND-TAM Anopheles gambiae genomic ... 44 5.4 1
(AZ606706) 1M0428F18R Mouse 10kb plasmid UUGC1M library Mus ... 44 5.4 1
(AZ378394) 1M0133F08F Mouse 10kb plasmid UUGC1M library Mus ... 44 5.4 1
(FH081561) CHO_OF3712xa11f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.4 1
(ER557038) 1092351559299 Global-Ocean-Sampling_GS-36-01-01-2... 44 5.4 1
(ER468746) 1092963941497 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.4 1
(EK356716) 1095468577061 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(EK133346) 1093011269708 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(EK113501) 1092963148919 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(EK066794) 1092960134750 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1
(EJ465822) 1095403006364 Global-Ocean-Sampling_GS-28-01-01-1... 44 5.4 1

>(BJ427129) Dictyostelium discoideum cDNA clone:ddv61j12, 5' end,
single read.
Length = 573

Score = 549 bits (277), Expect(4) = 0.0
Identities = 277/277 (100%)
Strand = Plus / Plus


Query: 212 aaaatgttttcggtacacatatggttatgaataatgaaattgaaaaacaaatttattcac 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aaaatgttttcggtacacatatggttatgaataatgaaattgaaaaacaaatttattcac 270


Query: 272 aatttaaaagattaccaactttacaaagttcaatggttggtttagaaacaattttaggtt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatttaaaagattaccaactttacaaagttcaatggttggtttagaaacaattttaggtt 330


Query: 332 tagatgaagatttcgattttggtgattatctttgtgatccagccacatcagaagcaccat 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tagatgaagatttcgattttggtgattatctttgtgatccagccacatcagaagcaccat 390


Query: 392 taccacaattacatacatctatggagcatagacgtggtatgactagttccaagagtattt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taccacaattacatacatctatggagcatagacgtggtatgactagttccaagagtattt 450


Query: 452 tatagataaattatccattcataaatatataaaaccg 488
|||||||||||||||||||||||||||||||||||||
Sbjct: 451 tatagataaattatccattcataaatatataaaaccg 487

Score = 240 bits (121), Expect(4) = 0.0
Identities = 121/121 (100%)
Strand = Plus / Plus


Query: 90 gatttggatttaccaacattaagaaatgaatcaagtaatgttaaaggattatcacatcca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gatttggatttaccaacattaagaaatgaatcaagtaatgttaaaggattatcacatcca 149


Query: 150 gttgaaagtattcaattagatcaaggtaaaacagaaataaaattaaaaaattttgcaatg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gttgaaagtattcaattagatcaaggtaaaacagaaataaaattaaaaaattttgcaatg 209


Query: 210 a 210
|
Sbjct: 210 a 210

Score = 65.9 bits (33), Expect(4) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 533 aatattgtcattataataaatcagcattactta 565
|||||||||||||||||||||||||||||||||
Sbjct: 532 aatattgtcattataataaatcagcattactta 564

Score = 42.1 bits (21), Expect(4) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1 atcaaactctcccacttttat 21
|||||||||||||||||||||
Sbjct: 1 atcaaactctcccacttttat 21

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 623,131,776
Number of extensions: 42729527
Number of successful extensions: 4023447
Number of sequences better than 10.0: 136
Length of query: 574
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 551
Effective length of database: 93,106,754,628
Effective search space: 51301821800028
Effective search space used: 51301821800028
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 4
Homology vs Protein
Query= Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Contig-U12759-1Q.Seq.d
(574 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55G18) RecName: Full=Proteasome maturation protein homolog; 162 7e-61
EF081833_1(EF081833|pid:none) Picea sitchensis clone WS0277_E02 ... 57 5e-08
AM447916_2(AM447916|pid:none) Vitis vinifera contig VV78X028200.... 56 8e-07
AC002130_7(AC002130|pid:none) Genomic sequence for Arabidopsis t... 55 2e-06
BT075020_1(BT075020|pid:none) Osmerus mordax clone omor-eva-007-... 54 3e-06
BT046312_1(BT046312|pid:none) Salmo salar clone ssal-evd-548-365... 53 7e-06
BT080084_1(BT080084|pid:none) Esox lucius clone eluc-evq-527-304... 52 2e-05
BT073388_1(BT073388|pid:none) Oncorhynchus mykiss clone omyk-evn... 52 2e-05
AB005231_20(AB005231|pid:none) Arabidopsis thaliana genomic DNA,... 52 2e-05
BT048916_1(BT048916|pid:none) Salmo salar clone ssal-evf-006-329... 51 2e-05
BT046655_1(BT046655|pid:none) Salmo salar clone ssal-evd-532-309... 51 2e-05
CR855731_1(CR855731|pid:none) Xenopus tropicalis finished cDNA, ... 51 3e-05
AK069830_1(AK069830|pid:none) Oryza sativa Japonica Group cDNA c... 51 3e-05
EF144452_1(EF144452|pid:none) Populus trichocarpa clone PX0019_J... 51 3e-05
BT073790_1(BT073790|pid:none) Oncorhynchus mykiss clone omyk-evo... 50 3e-05
BT073195_1(BT073195|pid:none) Oncorhynchus mykiss clone omyk-evn... 50 3e-05
DQ215365_1(DQ215365|pid:none) Taeniopygia guttata clone 0058P002... 50 3e-05
DQ215362_1(DQ215362|pid:none) Taeniopygia guttata clone 0063P003... 50 3e-05
DQ215359_1(DQ215359|pid:none) Taeniopygia guttata clone 0058P002... 50 3e-05
BT047921_1(BT047921|pid:none) Salmo salar clone ssal-eve-507-317... 50 4e-05
BT035670_1(BT035670|pid:none) Zea mays full-length cDNA clone ZM... 49 1e-04
BC068691_1(BC068691|pid:none) Xenopus laevis hypothetical protei... 47 4e-04
AP008215_295(AP008215|pid:none) Oryza sativa (japonica cultivar-... 46 6e-04
AK013934_1(AK013934|pid:none) Mus musculus 13 days embryo head c... 44 0.004
BC076250_1(BC076250|pid:none) Danio rerio zgc:92775, mRNA (cDNA ... 43 0.005
(Q5R9L9) RecName: Full=Proteasome maturation protein; AltName: F... 43 0.007
AB174503_1(AB174503|pid:none) Macaca fascicularis brain cDNA clo... 42 0.009
(Q3SZV5) RecName: Full=Proteasome maturation protein; AltName: F... 42 0.016
AM055943_138(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 42 0.016
CR940348_588(CR940348|pid:none) Theileria annulata strain Ankara... 40 0.029
AP005782_14(AP005782|pid:none) Oryza sativa Japonica Group genom... 36 0.65
DQ889521_1(DQ889521|pid:none) Arachis hypogaea clone UU4 unknown... 35 1.1
EU961939_1(EU961939|pid:none) Zea mays clone 239175 unknown mRNA. 32 9.4

>(Q55G18) RecName: Full=Proteasome maturation protein homolog;
Length = 128

Score = 162 bits (409), Expect(2) = 7e-61
Identities = 79/80 (98%), Positives = 79/80 (98%)
Frame = +1

Query: 214 NVFGTHMVMNNEIEKQIYSQFKRLPTLQSSMVGLETILGLDEDFDFGDYLCDPATSEAPL 393
NVFGTHMVMNNEIEKQIYSQFKRLPTLQSSMVGLETILGLDEDFDFGDYLCDPATSEAPL
Sbjct: 49 NVFGTHMVMNNEIEKQIYSQFKRLPTLQSSMVGLETILGLDEDFDFGDYLCDPATSEAPL 108

Query: 394 PQLHTSMEHRRGMTSSKSIL 453
PQLHTSMEHR GMTSSKSIL
Sbjct: 109 PQLHTSMEHRLGMTSSKSIL 128

Score = 95.1 bits (235), Expect(2) = 7e-61
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +3

Query: 69 MQSIVKKDLDLPTLRNESSNVKGLSHPVESIQLDQGKTEIKLKNFAMIKCF 221
MQSIVKKDLDLPTLRNESSNVKGLSHPVESIQLDQGKTEIKLKNFAM F
Sbjct: 1 MQSIVKKDLDLPTLRNESSNVKGLSHPVESIQLDQGKTEIKLKNFAMKNVF 51

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 725,078,671
Number of extensions: 12443239
Number of successful extensions: 27104
Number of sequences better than 10.0: 33
Number of HSP's gapped: 27088
Number of HSP's successfully gapped: 36
Length of query: 191
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 70
Effective length of database: 659,557,225
Effective search space: 46169005750
Effective search space used: 46169005750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.91 gvh: 0.39 alm: 0.44 top: 0.50 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: cytoskeletal
8.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for Contig-U12759-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0