Contig-U12759-1 |
Contig ID |
Contig-U12759-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
574 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
985533 |
End point |
984960 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U12759 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 3 |
Homology vs DNA |
Query= Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Contig-U12759-1Q.Seq.d (574 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ427129) Dictyostelium discoideum cDNA clone:ddv61j12, 5' ... 549 0.0 4 (BJ354694) Dictyostelium discoideum cDNA clone:dda54o11, 3' ... 347 7e-93 2 (EJ280539) 1095366052282 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.022 1 (AC179761) Strongylocentrotus purpuratus clone R3-1016N15, W... 44 0.051 3 (BX323587) Zebrafish DNA sequence from clone CH211-100L3. 46 0.073 2 (EJ569581) 1092960023405 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.085 3 (CR774183) Zebrafish DNA sequence from clone CH211-190A18 in... 50 0.088 1 (CV008080) zfi01-2ms1-g10 Zfi01 Zamia fischeri cDNA clone zf... 50 0.088 1 (BX465193) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.12 2 (CU856599) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.20 2 (AC214420) Populus trichocarpa clone POP111-L12, complete se... 38 0.21 2 (AC214631) Populus trichocarpa clone POP071-C21, complete se... 48 0.25 2 (AC010197) Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (R... 38 0.32 4 (AM435315) Vitis vinifera contig VV78X252702.12, whole genom... 48 0.33 3 (AU269110) Dictyostelium discoideum vegetative cDNA clone:VS... 48 0.35 1 (FC763257) CBBN13813.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 48 0.35 1 (CR848038) Chlamydophila abortus strain S26/3, complete genome. 48 0.35 1 (AC087279) Homo sapiens chromosome 11, clone RP11-559I10, co... 42 0.51 2 (AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.64 7 (EK118381) 1092963279925 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.79 2 (CN708290) E0544E10-5 NIA Mouse eight-cell-Embryo cDNA libra... 34 0.98 2 (DX525408) GH_MBb0021N03f GH_MBb Gossypium hirsutum genomic ... 40 1.0 2 (AC160004) Bos taurus clone CH240-82A15, WORKING DRAFT SEQUE... 36 1.3 6 (BX546452) Zebrafish DNA sequence from clone DKEYP-8B11 in l... 46 1.4 1 (BX530027) Zebrafish DNA sequence from clone DKEYP-81G7 in l... 46 1.4 1 (BX004889) Zebrafish DNA sequence from clone DKEY-65P15 in l... 46 1.4 1 (AB217044) Equus caballus DNA, microsatellite TKY3101. 46 1.4 1 (AC150237) Papio anubis clone RP41-59A12, WORKING DRAFT SEQU... 46 1.4 1 (AC141758) Apis mellifera clone CH224-60D16, WORKING DRAFT S... 46 1.4 1 (AC141052) Rattus norvegicus clone CH230-420E24, WORKING DRA... 46 1.4 1 (AC133670) Rattus norvegicus clone CH230-230B11, *** SEQUENC... 46 1.4 1 (AC129743) Rattus norvegicus clone CH230-31G7, WORKING DRAFT... 46 1.4 1 (CU915622) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1 (BX957293) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1 (AC203346) Macaca mulatta clone CH250-339G21, WORKING DRAFT ... 46 1.4 1 (BH535058) BOGJH90TF BOGJ Brassica oleracea genomic clone BO... 46 1.4 1 (EK171938) 1095458079262 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1 (EJ636662) 1093000801636 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1 (EJ611784) 1092962050021 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1 (ED075246) AUAC-aap44c07.b1 Ascaris suum whole genome shotgu... 46 1.4 1 (AJ584111) Equus caballus GSS, BAC clone CH241-102E10, T7 en... 46 1.4 1 (EH685771) CCIM10563.b1_E02.ab1 CCI(LMS) chicory Cichorium i... 46 1.4 1 (EG319244) MSAM303398_3680_0204 LCM-dissected maize inbred l... 46 1.4 1 (DT211986) N121_E06 Non embryogenic SSH library Cichorium in... 46 1.4 1 (AC155838) Mus musculus 6 BAC RP24-441P8 (Roswell Park Cance... 44 2.0 2 (AC161925) Mus musculus chromosome 18 clone RP23-59L5 map 18... 40 2.1 2 (BM170222) EST572745 PyBS Plasmodium yoelii yoelii cDNA clon... 36 2.2 2 (BM160629) EST563152 PyBS Plasmodium yoelii yoelii cDNA clon... 36 2.3 2 (ER573240) 1093015801398 Global-Ocean-Sampling_GS-36-01-01-2... 38 2.4 2 (AC160352) Bos taurus clone CH240-91G12, WORKING DRAFT SEQUE... 40 2.7 4 (AC154283) Mus musculus BAC clone RP24-279H4 from chromosome... 34 2.7 2 (AC165163) Mus musculus BAC clone RP23-146B12 from chromosom... 34 2.7 2 (AC149353) Phakopsora pachyrhizi clone JGIAFNA-41F11, comple... 34 2.9 2 (EJ493137) 1095403555553 Global-Ocean-Sampling_GS-28-01-01-1... 38 3.0 2 (DQ889679) Bacillus cereus strain G9241 plasmid pBC210, comp... 38 3.0 6 (CZ865165) OC__Ba0260G06.f OC__Ba Oryza coarctata genomic cl... 38 3.0 2 (EJ682363) 1092955140348 Global-Ocean-Sampling_GS-30-02-01-1... 34 3.0 2 (AM476477) Vitis vinifera contig VV78X119783.11, whole genom... 32 3.1 3 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 3.2 6 (EJ483006) 1095403482079 Global-Ocean-Sampling_GS-28-01-01-1... 38 3.2 2 (DX573474) Phaseolus-Bat-7_02_M10.T3 Phaseolus-Bat-7 Phaseol... 42 3.3 2 (AC175518) Bos taurus clone CH240-209I21, WORKING DRAFT SEQU... 44 3.5 5 (EJ391940) 1092963953440 Global-Ocean-Sampling_GS-28-01-01-1... 32 3.6 2 (CB247502) UI-M-FI0-cdz-j-22-0-UI.r1 NIH_BMAP_FI0 Mus muscul... 34 3.6 2 (AC079256) Homo sapiens BAC clone RP11-325I24 from 2, comple... 38 3.6 4 (CU062485) Zebrafish DNA sequence from clone CH73-353H16 in ... 42 3.9 3 (AC213016) Populus trichocarpa clone POP038-D19, complete se... 40 4.2 5 (AX344305) Sequence 152 from Patent WO0200926. 36 4.3 2 (CU915598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 4.6 3 (BM168820) EST571343 PyBS Plasmodium yoelii yoelii cDNA clon... 34 4.8 2 (AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 4.9 6 (CR388209) Zebrafish DNA sequence from clone DKEY-25C4 in li... 44 5.4 1 (BX323030) Zebrafish DNA sequence from clone DKEYP-77D7 in l... 44 5.4 1 (AC145948) Gallus gallus BAC clone CH261-24O17 from chromoso... 44 5.4 1 (AL935055) Mouse DNA sequence from clone RP23-131J21 on chro... 44 5.4 1 (AC115847) Mus musculus chromosome 5, clone RP24-245J15, com... 44 5.4 1 (AC215622) Populus trichocarpa clone ACSB2349-D05, complete ... 44 5.4 1 (AC187862) Populus trichocarpa clone Pop1-1L5, complete sequ... 44 5.4 1 (AC182707) Populus trichocarpa clone Pop1-80E22, complete se... 44 5.4 1 (AL139189) Human DNA sequence from clone RP11-94F16 on chrom... 44 5.4 1 (AC107956) Homo sapiens chromosome 11, clone RP11-452G18, co... 44 5.4 1 (AC003690) Human Chromosome 11 pac pDJ169p3, complete sequence. 44 5.4 1 (AC103209) Rattus norvegicus clone CH230-35H18, *** SEQUENCI... 44 5.4 1 (CU659418) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.4 1 (AC034296) Homo sapiens chromosome 13 clone RP11-438I6 map 1... 44 5.4 1 (AC185865) Bos taurus clone RP42-89E10, WORKING DRAFT SEQUEN... 44 5.4 1 (AC180818) Strongylocentrotus purpuratus clone R3-3071B18, W... 44 5.4 1 (AC024240) Homo sapiens chromosome 11 clone RP11-498A15, WOR... 44 5.4 1 (BH403129) AG-ND-171O1.TF ND-TAM Anopheles gambiae genomic c... 44 5.4 1 (BH376243) AG-ND-178B12.TR ND-TAM Anopheles gambiae genomic ... 44 5.4 1 (AZ606706) 1M0428F18R Mouse 10kb plasmid UUGC1M library Mus ... 44 5.4 1 (AZ378394) 1M0133F08F Mouse 10kb plasmid UUGC1M library Mus ... 44 5.4 1 (FH081561) CHO_OF3712xa11f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.4 1 (ER557038) 1092351559299 Global-Ocean-Sampling_GS-36-01-01-2... 44 5.4 1 (ER468746) 1092963941497 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.4 1 (EK356716) 1095468577061 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1 (EK133346) 1093011269708 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1 (EK113501) 1092963148919 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1 (EK066794) 1092960134750 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.4 1 (EJ465822) 1095403006364 Global-Ocean-Sampling_GS-28-01-01-1... 44 5.4 1
>(BJ427129) Dictyostelium discoideum cDNA clone:ddv61j12, 5' end, single read. Length = 573
Score = 549 bits (277), Expect(4) = 0.0 Identities = 277/277 (100%) Strand = Plus / Plus
Query: 212 aaaatgttttcggtacacatatggttatgaataatgaaattgaaaaacaaatttattcac 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 aaaatgttttcggtacacatatggttatgaataatgaaattgaaaaacaaatttattcac 270
Query: 272 aatttaaaagattaccaactttacaaagttcaatggttggtttagaaacaattttaggtt 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 aatttaaaagattaccaactttacaaagttcaatggttggtttagaaacaattttaggtt 330
Query: 332 tagatgaagatttcgattttggtgattatctttgtgatccagccacatcagaagcaccat 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 tagatgaagatttcgattttggtgattatctttgtgatccagccacatcagaagcaccat 390
Query: 392 taccacaattacatacatctatggagcatagacgtggtatgactagttccaagagtattt 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 taccacaattacatacatctatggagcatagacgtggtatgactagttccaagagtattt 450
Query: 452 tatagataaattatccattcataaatatataaaaccg 488 ||||||||||||||||||||||||||||||||||||| Sbjct: 451 tatagataaattatccattcataaatatataaaaccg 487
Score = 240 bits (121), Expect(4) = 0.0 Identities = 121/121 (100%) Strand = Plus / Plus
Query: 90 gatttggatttaccaacattaagaaatgaatcaagtaatgttaaaggattatcacatcca 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 gatttggatttaccaacattaagaaatgaatcaagtaatgttaaaggattatcacatcca 149
Query: 150 gttgaaagtattcaattagatcaaggtaaaacagaaataaaattaaaaaattttgcaatg 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 gttgaaagtattcaattagatcaaggtaaaacagaaataaaattaaaaaattttgcaatg 209
Query: 210 a 210 | Sbjct: 210 a 210
Score = 65.9 bits (33), Expect(4) = 0.0 Identities = 33/33 (100%) Strand = Plus / Plus
Query: 533 aatattgtcattataataaatcagcattactta 565 ||||||||||||||||||||||||||||||||| Sbjct: 532 aatattgtcattataataaatcagcattactta 564
Score = 42.1 bits (21), Expect(4) = 0.0 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1 atcaaactctcccacttttat 21 ||||||||||||||||||||| Sbjct: 1 atcaaactctcccacttttat 21
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 623,131,776 Number of extensions: 42729527 Number of successful extensions: 4023447 Number of sequences better than 10.0: 136 Length of query: 574 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 551 Effective length of database: 93,106,754,628 Effective search space: 51301821800028 Effective search space used: 51301821800028 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |