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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01986-1
Contig ID Contig-U01986-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01986-1 (Contig-U01986-1Q) /CSM_Contig/Contig-U01986-1Q.Seq.d
ATGAAGGAATAAAAGTTTTCATTGTTCATGGTCATAATAATATTGTAAGA
GAAAAAGTTTCAAAATTTTTATTTGAAATGGGATTTGAACCAATTTTATT
ATTTGAAAAACCAAATAATGGTCAAACAATAATTGAAAAATTAGAGAAAG
AAATTTCAAATTGTAAATTTGGTATTGTAATAATGTCACCCGATAATAAA
GCTTTTACTAAAAAAGATTCAAATTCTGATTATGTTGAAATTGCATATCC
AAGATTAAATGTAGTTTTCGAATTTGGTTATTTAATTGGAAAATTCGGTA
GATCAAATGTAATTTATTTATCGGTTCCATATAATGGTAAATCTCAAAAT
TATGATTTACCTTCTGATTTATTAGGCTATGTTTGGATAAATTATACTGA
AGATTTAAAAGAATTAGAAAATGAAATTAATTTTGGAAATTATAAGAAAT
TATAATAATAATAAAAAAAAAAAAAAATTAAAAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAAATAAAATAATATAATAAGAAAAATAATATAA
TAATAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 579
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4893261
End point 4892682
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01986
List of clone(s) 

est1=SSM102Z,1,580
Translated Amino Acid sequence 
EGIKVFIVHGHNNIVREKVSKFLFEMGFEPILLFEKPNNGQTIIEKLEKEISNCKFGIVI
MSPDNKAFTKKDSNSDYVEIAYPRLNVVFEFGYLIGKFGRSNVIYLSVPYNGKSQNYDLP
SDLLGYVWINYTEDLKELENEINFGNYKKL****kkkkikk*nkik*nkik*nkii**ek
*ynnkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
mke*kfslfmviiil*ekkfqnfylkwdlnqfyylknqimvkq*lkn*rkkfqivnlvl*
*chpiiklllkkiqilimlklhiqd*m*fsnlvi*lensvdqm*fiyrfhimvnlkimiy
lliy*amfg*iilki*kn*kmklileiirnynnnkkkkklknkik*nkik*nkik*ynkk
nniiikkkkkkkk


Frame B:
*rnksfhcsws**yckrksfkifi*ngi*tnfii*ktk*wsnnn*kirernfkl*iwycn
nvtr**sfy*krfkf*lc*nciskikcsfriwlfnwkir*ikcnlfigsi*w*iskl*ft
f*firlcldkly*rfkrirk*n*fwkl*eiiiiikkkkn*kik*nkik*nkik*nniirk
ii***kkkkkkk


Frame C:
EGIKVFIVHGHNNIVREKVSKFLFEMGFEPILLFEKPNNGQTIIEKLEKEISNCKFGIVI
MSPDNKAFTKKDSNSDYVEIAYPRLNVVFEFGYLIGKFGRSNVIYLSVPYNGKSQNYDLP
SDLLGYVWINYTEDLKELENEINFGNYKKL****kkkkikk*nkik*nkik*nkii**ek
*ynnkkkkkkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01986-1 (Contig-U01986-1Q)
/CSM_Contig/Contig-U01986-1Q.Seq.d
         (579 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01986-1 (Contig-U01986-1Q) /CSM_Contig/Conti...   914  0.0
Contig-U11930-1 (Contig-U11930-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11136-1 (Contig-U11136-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09280-1 (Contig-U09280-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U03476-1 (Contig-U03476-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13334-1 (Contig-U13334-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12862-1 (Contig-U12862-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U11826-1 (Contig-U11826-1Q) /CSM_Contig/Conti...    36  0.040

>Contig-U01986-1 (Contig-U01986-1Q) /CSM_Contig/Contig-U01986-1Q.Seq.d
          Length = 579

 Score =  914 bits (461), Expect = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaggaataaaagttttcattgttcatggtcataataatattgtaagagaaaaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaaggaataaaagttttcattgttcatggtcataataatattgtaagagaaaaagttt 60

                                                                       
Query: 61  caaaatttttatttgaaatgggatttgaaccaattttattatttgaaaaaccaaataatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaaatttttatttgaaatgggatttgaaccaattttattatttgaaaaaccaaataatg 120

                                                                       
Query: 121 gtcaaacaataattgaaaaattagagaaagaaatttcaaattgtaaatttggtattgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcaaacaataattgaaaaattagagaaagaaatttcaaattgtaaatttggtattgtaa 180

                                                                       
Query: 181 taatgtcacccgataataaagcttttactaaaaaagattcaaattctgattatgttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatgtcacccgataataaagcttttactaaaaaagattcaaattctgattatgttgaaa 240

                                                                       
Query: 241 ttgcatatccaagattaaatgtagttttcgaatttggttatttaattggaaaattcggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgcatatccaagattaaatgtagttttcgaatttggttatttaattggaaaattcggta 300

                                                                       
Query: 301 gatcaaatgtaatttatttatcggttccatataatggtaaatctcaaaattatgatttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatcaaatgtaatttatttatcggttccatataatggtaaatctcaaaattatgatttac 360

                                                                       
Query: 361 cttctgatttattaggctatgtttggataaattatactgaagatttaaaagaattagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttctgatttattaggctatgtttggataaattatactgaagatttaaaagaattagaaa 420

                                                    
Query: 421 atgaaattaattttggaaattataagaaattataataataa 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgaaattaattttggaaattataagaaattataataataa 461


>Contig-U11930-1 (Contig-U11930-1Q) /CSM_Contig/Contig-U11930-1Q.Seq.d
          Length = 2845

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 412  aattagaaaatgaaattaatttt 434
            ||||| |||||||||||||||||
Sbjct: 2612 aattaaaaaatgaaattaatttt 2634


 Score = 32.2 bits (16), Expect = 0.63
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 418  aaaatgaaattaattt 433
            ||||||||||||||||
Sbjct: 2160 aaaatgaaattaattt 2175


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 117  aatggtcaaacaat 130
            ||||||||||||||
Sbjct: 1409 aatggtcaaacaat 1422


>Contig-U11136-1 (Contig-U11136-1Q) /CSM_Contig/Contig-U11136-1Q.Seq.d
          Length = 4763

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 134  tgaaaaattagagaaagaa 152
            |||||||||||||||||||
Sbjct: 4106 tgaaaaattagagaaagaa 4124


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 269  cgaatttggttatt 282
            ||||||||||||||
Sbjct: 1692 cgaatttggttatt 1679


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,654
Number of Sequences: 6905
Number of extensions: 14654
Number of successful extensions: 1857
Number of sequences better than 10.0: 632
length of query: 579
length of database: 5,674,871
effective HSP length: 16
effective length of query: 563
effective length of database: 5,564,391
effective search space: 3132752133
effective search space used: 3132752133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.11
Homology vs DNA 
Query= Contig-U01986-1 (Contig-U01986-1Q) /CSM_Contig/Contig-U01986-1Q.Seq.d
         (579 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038886) Dictyostelium discoideum slug cDNA, clone SSM102.      454   e-178  2
(AC198849) Spermophilus tridecemlineatus clone VMRC20-474A15...    50   0.095  1
(CR933729) Zebrafish DNA sequence from clone CH211-287E24 in...    40   0.32   2
(AC234505) Ochotona princeps clone VMRC40-432O9, WORKING DRA...    48   0.37   1
(AC234496) Ochotona princeps clone VMRC40-22A18, WORKING DRA...    48   0.37   1
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    48   0.37   1
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    48   0.37   1
(CP000025) Campylobacter jejuni RM1221, complete genome.           48   0.37   1
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    48   0.37   1
(FP102184) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.79   2
(CU633347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.79   2
(CR903408) Sus scrofa BES.                                         36   1.1    2
(AC127277) Mus musculus BAC clone RP24-221P14 from chromosom...    46   1.5    1
(AC102569) Mus musculus chromosome 12, clone RP23-226F7, com...    46   1.5    1
(AB023028) Arabidopsis thaliana genomic DNA, chromosome 5, T...    46   1.5    1
(CS086350) Sequence 55 from Patent WO2005042786.                   46   1.5    1
(AC010653) Homo sapiens chromosome 16 clone RP11-417N10, com...    46   1.5    1
(CR974573) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    46   1.5    1
(AZ968196) 2M0240M21F Mouse 10kb plasmid UUGC2M library Mus ...    46   1.5    1
(EK363117) 1095469322797 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EK322023) 1095462432466 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EJ499031) 1095403604796 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.5    1
(CZ586476) OA_BBa0153E06.f OA_BBa Oryza alta genomic clone O...    46   1.5    1
(CR001340) Reverse strand read from insert in 3'HPRT inserti...    46   1.5    1
(AG374296) Mus musculus molossinus DNA, clone:MSMg01-180P14....    46   1.5    1
(EY069978) CATG2749.rev CATG Artemisia annua, Tanzanian, fro...    46   1.5    1
(AC220466) Bos taurus clone CH240-358C19, WORKING DRAFT SEQU...    42   1.8    2
(AC020585) Homo sapiens chromosome 20 clone RP11-84B9, WORKI...    34   2.9    2
(AL133341) Human DNA sequence from clone RP3-342O24 on chrom...    34   3.2    2
(CZ464970) MCF756d21TR Human MCF7 breast cancer cell line li...    34   3.9    2
(AC186763) Pongo abelii chromosome UNK clone CH276-31H12, co...    38   5.0    5
(AC122166) Medicago truncatula clone mth2-33b23, complete se...    44   5.8    1
(AC186999) Canis familiaris chromosome 11, clone XX-404J22, ...    44   5.8    1
(Z48006) Caenorhabditis elegans Cosmid F19C6.                      44   5.8    1
(AL356241) Human DNA sequence from clone RP11-58K5 on chromo...    44   5.8    1
(AC104016) Homo sapiens chromosome 11, clone RP11-343J8, com...    44   5.8    1
(AC027016) Homo sapiens chromosome 11, clone RP11-439M19, co...    44   5.8    1
(AC126347) Homo sapiens chromosome 11 clone RP11-181P16 map ...    44   5.8    1
(CU695036) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CU694543) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(AC067879) Homo sapiens chromosome 13 clone RP11-668K21 map ...    44   5.8    1
(CU041258) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(AC201113) Strongylocentrotus purpuratus clone R3-13L22, WOR...    44   5.8    1
(AC186904) Zea mays chromosome 2 clone CH201-167C12; ZMMBBc0...    44   5.8    1
(AC181333) Strongylocentrotus purpuratus clone R3-4019D07, W...    44   5.8    1
(AC176654) Strongylocentrotus purpuratus clone R3-3080P20, W...    44   5.8    1
(AC176652) Strongylocentrotus purpuratus clone R3-3080O09, W...    44   5.8    1
(AC176595) Strongylocentrotus purpuratus clone R3-3077O12, W...    44   5.8    1
(AC168774) Strongylocentrotus purpuratus clone R3-13N22, WOR...    44   5.8    1
(AC024418) Homo sapiens chromosome 13 clone RP11-763F16 map ...    44   5.8    1
(EF530145) Actinidia deliciosa cysteine protease Cp5 mRNA, c...    44   5.8    1
(ER489314) 1093015318363 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.8    1
(EK400985) 1095469540602 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK274370) 1095462270662 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(AM643266) Entamoeba dispar GSS, clone dispar112g10.p1k.           44   5.8    1
(AM642971) Entamoeba dispar GSS, clone dispar9d10.p1k.             44   5.8    1
(ED759433) GM_WBb0129I07.r GM_WBb Glycine max genomic clone ...    44   5.8    1
(DU313470) 1098312109277 CHORI-243 Ovis aries genomic clone ...    44   5.8    1
(EE822304) 020605ONLN149046HT ONLN Ovis aries cDNA, mRNA seq...    44   5.8    1
(EE817772) 010914ONDC191061HT ONDC Ovis aries cDNA, mRNA seq...    44   5.8    1
(EE806462) 010914ONDC076057HT ONDC Ovis aries cDNA, mRNA seq...    44   5.8    1
(FG496490) 030414KAWC007683HT (KAWC) Actinidia chinensis - a...    44   5.8    1
(FG427936) 010423KABA019861HT (KABA) A. deliciosa petal Acti...    44   5.8    1
(FG425622) 010816KUFA008017HT (KUFA) Actinidia eriantha youn...    44   5.8    1
(FG423146) 010801KUFA012592HT (KUFA) Actinidia eriantha youn...    44   5.8    1
(FG423138) 010801KUFA012584HT (KUFA) Actinidia eriantha youn...    44   5.8    1
(EW416061) rnbm25b_d24.y1 nbm Sus scrofa cDNA 5', mRNA seque...    44   5.8    1
(CP001186) Bacillus cereus G9842, complete genome.                 44   5.8    1
(AM450642) Vitis vinifera, whole genome shotgun sequence, co...    32   6.7    4
(CP001123) Salmonella enterica subsp. enterica serovar Kentu...    42   7.9    2
(CR932017) Zebrafish DNA sequence from clone DKEY-33F9 in li...    40   9.2    5
(AC225458) Medicago truncatula clone mth2-161l3, WORKING DRA...    36   9.4    7

>(AU038886) Dictyostelium discoideum slug cDNA, clone SSM102.
          Length = 580

 Score =  454 bits (229), Expect(2) = e-178
 Identities = 229/229 (100%)
 Strand = Plus / Plus


Query: 170 tggtattgtaataatgtcacccgataataaagcttttactaaaaaagattcaaattctga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tggtattgtaataatgtcacccgataataaagcttttactaaaaaagattcaaattctga 229


Query: 230 ttatgttgaaattgcatatccaagattaaatgtagttttcgaatttggttatttaattgg 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ttatgttgaaattgcatatccaagattaaatgtagttttcgaatttggttatttaattgg 289


Query: 290 aaaattcggtagatcaaatgtaatttatttatcggttccatataatggtaaatctcaaaa 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaaattcggtagatcaaatgtaatttatttatcggttccatataatggtaaatctcaaaa 349


Query: 350 ttatgatttaccttctgatttattaggctatgtttggataaattatact 398
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttatgatttaccttctgatttattaggctatgtttggataaattatact 398

 Score =  208 bits (105), Expect(2) = e-178
 Identities = 105/105 (100%)
 Strand = Plus / Plus


Query: 1   atgaaggaataaaagttttcattgttcatggtcataataatattgtaagagaaaaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaaggaataaaagttttcattgttcatggtcataataatattgtaagagaaaaagttt 60


Query: 61  caaaatttttatttgaaatgggatttgaaccaattttattatttg 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaaatttttatttgaaatgggatttgaaccaattttattatttg 105

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 527,759,520
Number of extensions: 33947400
Number of successful extensions: 2895381
Number of sequences better than 10.0: 73
Length of query: 579
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 556
Effective length of database: 99,442,330,388
Effective search space: 55289935695728
Effective search space used: 55289935695728
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01986-1 (Contig-U01986-1Q) /CSM_Contig/Contig-U01986-1Q.Seq.d
         (579 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000947_1153(CP000947|pid:none) Haemophilus somnus 2336, comple...    97   2e-19
CP000510_2175(CP000510|pid:none) Psychromonas ingrahamii 37, com...    93   6e-18
CP000446_3047(CP000446|pid:none) Shewanella sp. MR-4, complete g...    93   6e-18
BX950851_2867(BX950851|pid:none) Erwinia carotovora subsp. atros...    90   5e-17
CP000133_1940(CP000133|pid:none) Rhizobium etli CFN 42, complete...    90   5e-17
CP000282_713(CP000282|pid:none) Saccharophagus degradans 2-40, c...    89   1e-16
CP000616_642(CP000616|pid:none) Burkholderia vietnamiensis G4 ch...    89   1e-16
CP000962_739(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    87   4e-16
CP001032_3099(CP001032|pid:none) Opitutus terrae PB90-1, complet...    82   1e-14
CP000089_1903(CP000089|pid:none) Dechloromonas aromatica RCB, co...    81   2e-14
CP000494_3110(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    78   2e-13
A90521(A90521) hypothetical protein MYPU_0730 [imported] - Mycop...    77   3e-13
CP001154_387(CP001154|pid:none) Laribacter hongkongensis HLHK9, ...    76   8e-13
CP001108_609(CP001108|pid:none) Prosthecochloris aestuarii DSM 2...    73   5e-12
AE016795_2293(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos...    69   9e-11
EF157847_9(EF157847|pid:none) Mesorhizobium sp. R88B IntA (intA)...    69   1e-10
CP000301_3024(CP000301|pid:none) Rhodopseudomonas palustris BisB...    60   3e-08
CP001635_2671(CP001635|pid:none) Variovorax paradoxus S110 chrom...    60   4e-08
CP000150_73(CP000150|pid:none) Burkholderia sp. 383 chromosome 3...    56   6e-07
EF611303_20(EF611303|pid:none) Pseudomonas aeruginosa PAGI-7 gen...    54   4e-06
AE005673_2679(AE005673|pid:none) Caulobacter crescentus CB15, co...    53   7e-06
CP000116_816(CP000116|pid:none) Thiobacillus denitrificans ATCC ...    52   1e-05
CP000806_2636(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    46   6e-04
CP000867_436(CP000867|pid:none) Methanococcus maripaludis C6, co...    42   0.012
A90110(A90110) 26S proteasome regulatory subunit [imported] - Gu...    42   0.016
CP001299_230(CP001299|pid:none) Methylobacterium chloromethanicu...    42   0.016
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'...    39   0.13
CP000463_3284(CP000463|pid:none) Rhodopseudomonas palustris BisA...    38   0.17
AE014187_196(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.66
CP000961_2483(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    36   0.66
CR940348_171(CR940348|pid:none) Theileria annulata strain Ankara...    35   1.5
AF211133_4(AF211133|pid:none) Carsonella ruddii natural-host Cte...    35   1.9
CP001056_694(CP001056|pid:none) Clostridium botulinum B str. Ekl...    35   1.9
AY521251_10(AY521251|pid:none) Aleurodicus dugesii mitochondrion...    35   1.9
CP000013_259(CP000013|pid:none) Borrelia garinii PBi, complete g...    34   2.5
CP001078_654(CP001078|pid:none) Clostridium botulinum E3 str. Al...    34   2.5
AE017308_600(AE017308|pid:none) Mycoplasma mobile 163K complete ...    34   2.5
(P61683) RecName: Full=UDP-N-acetylmuramate--L-alanine ligase;  ...    34   3.3
AD1880(AD1880) hypothetical protein all0589 [imported] - Nostoc ...    34   3.3
CP001614_1576(CP001614|pid:none) Teredinibacter turnerae T7901, ...    34   3.3
CP000111_1067(CP000111|pid:none) Prochlorococcus marinus str. MI...    33   4.3
CP001172_1934(CP001172|pid:none) Acinetobacter baumannii AB307-0...    33   4.3
CP000863_1549(CP000863|pid:none) Acinetobacter baumannii ACICU, ...    33   4.3
CP000552_1170(CP000552|pid:none) Prochlorococcus marinus str. MI...    33   4.3
AE016817_196(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    33   5.6
DQ229107_102(DQ229107|pid:none) Chara vulgaris chloroplast, comp...    33   7.3
CP001322_2997(CP001322|pid:none) Desulfatibacillum alkenivorans ...    33   7.3
AL844507_17(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    33   7.3
DQ927303_31(DQ927303|pid:none) Tetrahymena malaccensis strain MP...    33   7.3
CP001322_360(CP001322|pid:none) Desulfatibacillum alkenivorans A...    33   7.3
FN357541_6(FN357541|pid:none) Schistosoma mansoni genome sequenc...    32   9.5
AM910993_475(AM910993|pid:none) Plasmodium knowlesi strain H chr...    32   9.5
AM180355_1040(AM180355|pid:none) Clostridium difficile 630 compl...    32   9.6
AY588062_1(AY588062|pid:none) Homalodisca coagulata putative arg...    32   9.6

>CP000947_1153(CP000947|pid:none) Haemophilus somnus 2336, complete
           genome.
          Length = 279

 Score = 97.4 bits (241), Expect = 2e-19
 Identities = 57/128 (44%), Positives = 84/128 (65%)
 Frame = +3

Query: 12  KVFIVHGHNNIVREKVSKFLFEMGFEPILLFEKPNNGQTIIEKLEKEISNCKFGIVIMSP 191
           KVFIVHG +N  +++V++F+ +MGFEPI+L E+ + G TIIEK+EK  +N  FGIV+ +P
Sbjct: 135 KVFIVHGRDNETKQEVARFIEKMGFEPIILHEQSSLGMTIIEKIEK-YTNVGFGIVLYTP 193

Query: 192 DNKAFTKKDSNSDYVEIAYPRLNVVFEFGYLIGKFGRSNVIYLSVPYNGKSQNYDLPSDL 371
            +K + +KDS  +    A  R NVVFE G+LI K GR+NV  L         + + P+D+
Sbjct: 194 CDKGY-EKDSPKEIKSRA--RQNVVFEHGFLISKLGRNNVCAL------VKDDIEKPNDI 244

Query: 372 LGYVWINY 395
            G V+I +
Sbjct: 245 SGVVYITF 252

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 670,749,730
Number of extensions: 12970320
Number of successful extensions: 39745
Number of sequences better than 10.0: 54
Number of HSP's gapped: 39671
Number of HSP's successfully gapped: 54
Length of query: 193
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 71
Effective length of database: 656,320,666
Effective search space: 46598767286
Effective search space used: 46598767286
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.78  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U01986-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0