>Contig-U12752-1 (Contig-U12752-1Q) /CSM_Contig/Contig-U12752-1Q.Seq.d
NNNNNNNNNNGAGTTTGTTGATTTNGATCCNAAACCNTTNNTTTGNAAAA
NTGNTGCTGTTGTTTCANTTGGNGNTGCTGTTGGNGNTNCTGTTGGNGGG
GCNANTGCNCTTGGNGTNTTTATTTTTGNTGGTAAAAAANGTTNTNACTN
CTGGAAANCNAGTCAAGGNGNTNCAANGGCCNCNTCAAANGCCNATCCCC
TTT

est1=AHK782Z,1,194

XXXEFVDXDPKPXXXKXXAVVSXGXAVGXXVGGAXALGVFIFXGKKXXXXWKXSQGXXXA
XSXAXPL

Frame A:
xxxxvc*fxsxtxxlxxxcccfxwxccwxxcwxgxcxwxxyfxw*kxxxllexxsrxxxg
xxkxxsp


Frame B:
XXXEFVDXDPKPXXXKXXAVVSXGXAVGXXVGGAXALGVFIFXGKKXXXXWKXSQGXXXA
XSXAXPL


Frame C:
xxxsllixixnxxfxkxxllfxlxxllxxllxgxxxlxxlflxvkxvxtxgxxvkxxqxp
xqxpipf

Query= Contig-U12752-1 (Contig-U12752-1Q)
/CSM_Contig/Contig-U12752-1Q.Seq.d
         (203 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12752-1 (Contig-U12752-1Q) /CSM_Contig/Conti...   109  1e-24
Contig-U11508-1 (Contig-U11508-1Q) /CSM_Contig/Conti...    62  2e-10
Contig-U14290-1 (Contig-U14290-1Q) /CSM_Contig/Conti...    54  6e-08
Contig-U12652-1 (Contig-U12652-1Q) /CSM_Contig/Conti...    46  1e-05
Contig-U13043-1 (Contig-U13043-1Q) /CSM_Contig/Conti...    28  3.3
Contig-U11524-1 (Contig-U11524-1Q) /CSM_Contig/Conti...    28  3.3
Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Conti...    28  3.3
Contig-U09022-1 (Contig-U09022-1Q) /CSM_Contig/Conti...    28  3.3
Contig-U05419-1 (Contig-U05419-1Q) /CSM_Contig/Conti...    28  3.3

>Contig-U12752-1 (Contig-U12752-1Q) /CSM_Contig/Contig-U12752-1Q.Seq.d
          Length = 203

 Score =  109 bits (55), Expect = 1e-24
 Identities = 182/193 (94%)
 Strand = Plus / Plus

                                                                       
Query: 11  gagtttgttgatttngatccnaaaccnnnnnnnngnaaaantgntgctgttgtttcantt 70
           |||||||||||||||||||||||||||  ||   ||||||||||||||||||||||||||
Sbjct: 11  gagtttgttgatttngatccnaaaccnttnntttgnaaaantgntgctgttgtttcantt 70

                                                                       
Query: 71  ggngntgctgttggngntnctgttnnnnnnncnantgcncttggngtntttatttttgnt 130
           ||||||||||||||||||||||||  |    |||||||||||||||||||||||||||||
Sbjct: 71  ggngntgctgttggngntnctgttggnggggcnantgcncttggngtntttatttttgnt 130

                                                                       
Query: 131 ggtaaaaaangttntnactnctggaaancnagtcaaggngntncaanggccncntcaaan 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ggtaaaaaangttntnactnctggaaancnagtcaaggngntncaanggccncntcaaan 190

                        
Query: 191 gccnatccccttt 203
           |||||||||||||
Sbjct: 191 gccnatccccttt 203


>Contig-U11508-1 (Contig-U11508-1Q) /CSM_Contig/Contig-U11508-1Q.Seq.d
          Length = 1223

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 166/193 (86%)
 Strand = Plus / Plus

                                                                        
Query: 11   gagtttgttgatttngatccnaaaccnnnnnnnngnaaaantgntgctgttgtttcantt 70
            ||||||| |||||||||||||||||||  ||   |||||||||||| || ||||||||||
Sbjct: 1001 gagtttgntgatttngatccnaaaccnttnntttgnaaaantgntgntgntgtttcantt 1060

                                                                        
Query: 71   ggngntgctgttggngntnctgttnnnnnnncnantgcncttggngtntttatttttgnt 130
            |||||||||||||||||| |||||  |    ||||||||||||| || |||| ||||| |
Sbjct: 1061 ggngntgctgttggngntgctgttggnggggcnantgcncttggggtttttanttttggt 1120

                                                                        
Query: 131  ggtaaaaaangttntnactnctggaaancnagtcaaggngntncaanggccncntcaaan 190
            || |||||| |||||  |||||||||||| | ||||||||||||||||||||| | ||||
Sbjct: 1121 ggnaaaaaaggttntgnctnctggaaancaantcaaggngntncaanggccncatnaaan 1180

                         
Query: 191  gccnatccccttt 203
            |||||||||||||
Sbjct: 1181 gccnatccccttt 1193


>Contig-U14290-1 (Contig-U14290-1Q) /CSM_Contig/Contig-U14290-1Q.Seq.d
          Length = 157

 Score = 54.0 bits (27), Expect = 6e-08
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                       
Query: 47  aaaantgntgctgttgtttcanttggngntgctgttggngntnctgttnnnnnnncnant 106
           |||||||||||||||||||||||||||||||||||||||||| |||||     | |||||
Sbjct: 45  aaaantgntgctgttgtttcanttggngntgctgttggngntgctgttggtggngcnant 104

                                                              
Query: 107 gcncttggngtntttatttttgntggtaaaaaangttntnactnctggaaa 157
           |||||||||||||||| ||||| ||| |||||||||| | | | |||||||
Sbjct: 105 gcncttggngtntttanttttggtggnaaaaaangttatgantactggaaa 155


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196
Number of Sequences: 6905
Number of extensions: 196
Number of successful extensions: 44
Number of sequences better than 10.0: 9
length of query: 203
length of database: 5,674,871
effective HSP length: 15
effective length of query: 188
effective length of database: 5,571,296
effective search space: 1047403648
effective search space used: 1047403648
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U12752-1 (Contig-U12752-1Q) /CSM_Contig/Contig-U12752-1Q.Seq.d
         (203 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ351535) Dictyostelium discoideum cDNA clone:dda43f20, 3' ...    88   1e-18  2
(BJ355096) Dictyostelium discoideum cDNA clone:dda55a23, 3' ...    82   2e-16  2
(BJ383524) Dictyostelium discoideum cDNA clone:ddc53g12, 3' ...    82   9e-15  2
(BJ349366) Dictyostelium discoideum cDNA clone:dda36c12, 3' ...    82   1e-14  2
(BJ343144) Dictyostelium discoideum cDNA clone:dda22m03, 3' ...    82   1e-14  2
(BJ381587) Dictyostelium discoideum cDNA clone:ddc42b03, 3' ...    82   3e-14  2
(BJ350791) Dictyostelium discoideum cDNA clone:dda41e02, 3' ...    82   3e-14  2
(BJ349217) Dictyostelium discoideum cDNA clone:dda35d19, 3' ...    82   3e-14  2
(BJ347982) Dictyostelium discoideum cDNA clone:dda31f23, 3' ...    82   3e-14  2
(BJ349833) Dictyostelium discoideum cDNA clone:dda37e21, 3' ...    82   3e-14  2
(BJ401594) Dictyostelium discoideum cDNA clone:dds23d23, 3' ...    82   3e-14  2
(BJ348661) Dictyostelium discoideum cDNA clone:dda33n20, 3' ...    82   4e-14  2
(BJ355449) Dictyostelium discoideum cDNA clone:dda57j06, 3' ...    82   4e-14  2
(BJ354405) Dictyostelium discoideum cDNA clone:dda53c15, 3' ...    82   4e-14  2
(BJ353764) Dictyostelium discoideum cDNA clone:dda51i07, 3' ...    82   4e-14  2
(BJ348483) Dictyostelium discoideum cDNA clone:dda33j11, 3' ...    82   4e-14  2
(BJ356617) Dictyostelium discoideum cDNA clone:dda60k20, 3' ...    82   4e-14  2
(BJ349854) Dictyostelium discoideum cDNA clone:dda37i20, 3' ...    88   1e-13  1
(BJ355370) Dictyostelium discoideum cDNA clone:dda56h14, 3' ...    76   4e-13  2
(BJ385679) Dictyostelium discoideum cDNA clone:ddc55d24, 3' ...    76   6e-13  2
(BJ385300) Dictyostelium discoideum cDNA clone:ddc54b13, 3' ...    76   6e-13  2
(BJ402751) Dictyostelium discoideum cDNA clone:dds17l22, 3' ...    76   6e-13  2
(BJ355236) Dictyostelium discoideum cDNA clone:dda56l05, 3' ...    76   6e-13  2
(BJ382339) Dictyostelium discoideum cDNA clone:ddc44m12, 3' ...    76   7e-13  2
(BJ347941) Dictyostelium discoideum cDNA clone:dda31n14, 3' ...    68   8e-13  2
(BJ355601) Dictyostelium discoideum cDNA clone:dda57j13, 3' ...    76   1e-12  2
(BJ398435) Dictyostelium discoideum cDNA clone:dds12n12, 3' ...    76   1e-12  2
(BJ356719) Dictyostelium discoideum cDNA clone:dda61a12, 3' ...    76   2e-12  2
(BJ400492) Dictyostelium discoideum cDNA clone:dds13b16, 3' ...    76   2e-12  2
(BJ349255) Dictyostelium discoideum cDNA clone:dda35l20, 3' ...    76   2e-12  2
(BJ351296) Dictyostelium discoideum cDNA clone:dda42o18, 3' ...    76   2e-12  2
(BJ348147) Dictyostelium discoideum cDNA clone:dda32g10, 3' ...    76   2e-12  2
(BJ376250) Dictyostelium discoideum cDNA clone:ddc21c19, 3' ...    76   2e-12  2
(BJ408298) Dictyostelium discoideum cDNA clone:dds45i10, 3' ...    82   8e-12  1
(BJ383124) Dictyostelium discoideum cDNA clone:ddc46n23, 3' ...    82   8e-12  1
(BJ380613) Dictyostelium discoideum cDNA clone:ddc38b19, 3' ...    82   8e-12  1
(BJ355132) Dictyostelium discoideum cDNA clone:dda55i19, 3' ...    82   8e-12  1
(BJ349935) Dictyostelium discoideum cDNA clone:dda38k03, 3' ...    82   8e-12  1
(BJ348878) Dictyostelium discoideum cDNA clone:dda34l18, 3' ...    82   8e-12  1
(BJ401899) Dictyostelium discoideum cDNA clone:dds19c22, 3' ...    74   9e-12  2
(BJ351867) Dictyostelium discoideum cDNA clone:dda44i23, 3' ...    72   3e-11  2
(BJ357184) Dictyostelium discoideum cDNA clone:dda62a19, 3' ...    72   3e-11  2
(BJ383031) Dictyostelium discoideum cDNA clone:ddc46l13, 3' ...    72   3e-11  2
(BJ353939) Dictyostelium discoideum cDNA clone:dda52a02, 3' ...    72   3e-11  2
(BJ355105) Dictyostelium discoideum cDNA clone:dda55c22, 3' ...    72   3e-11  2
(BJ352373) Dictyostelium discoideum cDNA clone:dda46e14, 3' ...    72   3e-11  2
(BJ352099) Dictyostelium discoideum cDNA clone:dda45j15, 3' ...    72   4e-11  2
(BJ354400) Dictyostelium discoideum cDNA clone:dda53b15, 3' ...    72   4e-11  2
(BJ349951) Dictyostelium discoideum cDNA clone:dda38n03, 3' ...    72   4e-11  2
(BJ356052) Dictyostelium discoideum cDNA clone:dda59g05, 3' ...    70   1e-10  2
(BJ381436) Dictyostelium discoideum cDNA clone:ddc41c16, 3' ...    68   2e-10  2
(BJ353006) Dictyostelium discoideum cDNA clone:dda48m13, 3' ...    60   2e-10  2
(BJ405685) Dictyostelium discoideum cDNA clone:dds32f16, 3' ...    60   3e-10  2
(BJ349222) Dictyostelium discoideum cDNA clone:dda35d24, 3' ...    66   5e-10  2
(BJ382149) Dictyostelium discoideum cDNA clone:ddc43f02, 3' ...    76   5e-10  1
(BJ380506) Dictyostelium discoideum cDNA clone:ddc38k12, 3' ...    76   5e-10  1
(BJ358089) Dictyostelium discoideum cDNA clone:dda65p16, 3' ...    76   5e-10  1
(BJ357106) Dictyostelium discoideum cDNA clone:dda62p11, 3' ...    76   5e-10  1
(BJ354763) Dictyostelium discoideum cDNA clone:dda54m14, 3' ...    76   5e-10  1
(BJ354745) Dictyostelium discoideum cDNA clone:dda54i16, 3' ...    76   5e-10  1
(BJ354671) Dictyostelium discoideum cDNA clone:dda54j12, 3' ...    76   5e-10  1
(BJ354141) Dictyostelium discoideum cDNA clone:dda52l17, 3' ...    76   5e-10  1
(BJ353723) Dictyostelium discoideum cDNA clone:dda51p03, 3' ...    76   5e-10  1
(BJ348266) Dictyostelium discoideum cDNA clone:dda32o13, 3' ...    76   5e-10  1
(BJ345697) Dictyostelium discoideum cDNA clone:dda28d15, 3' ...    76   5e-10  1
(BJ344622) Dictyostelium discoideum cDNA clone:dda19n24, 3' ...    76   5e-10  1
(BJ342579) Dictyostelium discoideum cDNA clone:dda14n16, 3' ...    76   5e-10  1
(BJ382480) Dictyostelium discoideum cDNA clone:ddc44j24, 3' ...    74   2e-09  1
(BJ380435) Dictyostelium discoideum cDNA clone:ddc38l02, 3' ...    74   2e-09  1
(BJ357502) Dictyostelium discoideum cDNA clone:dda63b23, 3' ...    74   2e-09  1
(BJ356237) Dictyostelium discoideum cDNA clone:dda59n18, 3' ...    74   2e-09  1
(BJ346071) Dictyostelium discoideum cDNA clone:dda29c02, 3' ...    74   2e-09  1
(BJ345505) Dictyostelium discoideum cDNA clone:dda23l20, 3' ...    74   2e-09  1
(BJ342509) Dictyostelium discoideum cDNA clone:dda14i11, 3' ...    74   2e-09  1
(BJ358232) Dictyostelium discoideum cDNA clone:dda43p03, 3' ...    64   5e-09  2
(BJ404510) Dictyostelium discoideum cDNA clone:dds28c20, 3' ...    72   8e-09  1
(BJ383216) Dictyostelium discoideum cDNA clone:ddc52c08, 3' ...    72   8e-09  1
(BJ353080) Dictyostelium discoideum cDNA clone:dda48m19, 3' ...    72   8e-09  1
(BJ351475) Dictyostelium discoideum cDNA clone:dda43h17, 3' ...    72   8e-09  1
(BJ350031) Dictyostelium discoideum cDNA clone:dda38p07, 3' ...    72   8e-09  1
(BJ378492) Dictyostelium discoideum cDNA clone:ddc31l02, 3' ...    70   3e-08  1
(BJ350692) Dictyostelium discoideum cDNA clone:dda40p15, 3' ...    70   3e-08  1
(BJ349476) Dictyostelium discoideum cDNA clone:dda36i16, 3' ...    70   3e-08  1
(BJ353456) Dictyostelium discoideum cDNA clone:dda50a12, 3' ...    60   7e-08  2
(BJ352612) Dictyostelium discoideum cDNA clone:dda47f10, 3' ...    60   7e-08  2
(BJ353072) Dictyostelium discoideum cDNA clone:dda48k21, 3' ...    60   7e-08  2
(BJ350200) Dictyostelium discoideum cDNA clone:dda39g02, 3' ...    56   3e-07  2
(BJ340050) Dictyostelium discoideum cDNA clone:dda11n12, 3' ...    58   3e-07  2
(BJ357546) Dictyostelium discoideum cDNA clone:dda63k23, 3' ...    58   3e-07  2
(BJ385407) Dictyostelium discoideum cDNA clone:ddc54h24, 3' ...    66   5e-07  1
(BJ379392) Dictyostelium discoideum cDNA clone:ddc34a19, 3' ...    54   1e-06  2
(BJ378002) Dictyostelium discoideum cDNA clone:ddc26a24, 3' ...    54   4e-06  2
(BJ400621) Dictyostelium discoideum cDNA clone:dds14e06, 3' ...    54   4e-06  2
(BJ379059) Dictyostelium discoideum cDNA clone:ddc33l14, 3' ...    50   5e-06  2
(BJ384711) Dictyostelium discoideum cDNA clone:ddc50n12, 3' ...    52   1e-05  2
(BJ355603) Dictyostelium discoideum cDNA clone:dda57j16, 3' ...    52   2e-05  2
(BJ384843) Dictyostelium discoideum cDNA clone:ddc50m23, 3' ...    46   2e-04  2
(BJ383020) Dictyostelium discoideum cDNA clone:ddc46i14, 3' ...    48   2e-04  2
(BJ349441) Dictyostelium discoideum cDNA clone:dda36b18, 3' ...    42   0.005  2
(BJ384009) Dictyostelium discoideum cDNA clone:ddc47n19, 3' ...    52   0.007  1

>(BJ351535) Dictyostelium discoideum cDNA clone:dda43f20, 3' end,
           single read.
          Length = 248

 Score = 87.7 bits (44), Expect(2) = 1e-18
 Identities = 90/98 (91%)
 Strand = Plus / Minus


Query: 106 tgcncttggngtntttatttttgntggtaaaaaangttntnactnctggaaancnagtca 165
           |||||||||||||||||||||||||||||||||| ||| | ||||||||||| | |||||
Sbjct: 99  tgcncttggngtntttatttttgntggtaaaaaaggttatgactnctggaaagcaagtca 40


Query: 166 aggngntncaanggccncntcaaangccnatccccttt 203
           ||| | |||||||||||||||||| |||||||||||||
Sbjct: 39  aggtgttncaanggccncntcaaatgccnatccccttt 2

 Score = 38.2 bits (19), Expect(2) = 1e-18
 Identities = 24/25 (96%)
 Strand = Plus / Minus


Query: 12  agtttgttgatttngatccnaaacc 36
           ||||||||||||||||||| |||||
Sbjct: 193 agtttgttgatttngatccaaaacc 169

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 37,470,658
Number of extensions: 2154854
Number of successful extensions: 81947
Number of sequences better than 10.0: 109
Length of query: 203
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 180
Effective length of database: 93,106,754,628
Effective search space: 16759215833040
Effective search space used: 16759215833040
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U12752-1 (Contig-U12752-1Q) /CSM_Contig/Contig-U12752-1Q.Seq.d
         (203 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    52   6e-06
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    51   1e-05
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 51   1e-05
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 49   7e-05
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 44   0.002
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 36   0.37

>(Q94494) RecName: Full=Protein psiH; Flags: Precursor;
           &U67940_1(U67940|pid:none)
          Length = 715

 Score = 52.0 bits (123), Expect = 6e-06
 Identities = 27/61 (44%), Positives = 32/61 (52%)
 Frame = +2

Query: 20  DXDPKPXXXKXXAVVSXGXAVGXXVGGAXALGVFIFXGKKXXXXWKXSQGXXXAXSXAXP 199
           D DP P   K  AVVS     G  V GA ALGVFI+ GK+    WK S+    + S + P
Sbjct: 635 DYDPLPFICKTGAVVSTAVIAGVTVAGAVALGVFIYGGKRGYDYWKESRNVQFSGSNSNP 694

Query: 200 L 202
           L
Sbjct: 695 L 695

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 90,461,659
Number of extensions: 5162874
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 6
Length of query: 67
Length of database: 1,051,180,864
Length adjustment: 39
Effective length of query: 28
Effective length of database: 924,955,063
Effective search space: 25898741764
Effective search space used: 25898741764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

 psg: 0.75  gvh: 0.53  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12752-1 is cyt