Contig-U12744-1 |
Contig ID |
Contig-U12744-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
639 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
573781 |
End point |
573143 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U12744 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 3 |
Homology vs DNA |
Query= Contig-U12744-1 (Contig-U12744-1Q) /CSM_Contig/Contig-U12744-1Q.Seq.d (639 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ335648) Dictyostelium discoideum cDNA clone:dda51g05, 5' ... 1267 0.0 1 (BJ418191) Dictyostelium discoideum cDNA clone:ddv31o23, 5' ... 1057 0.0 1 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 44 2e-04 8 (CT571243) Mouse DNA sequence from clone RP23-122I21 on chro... 56 0.002 1 (AC171204) Mus musculus BAC clone RP23-312J21 from chromosom... 56 0.002 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 56 0.002 1 (AC141953) Rattus norvegicus clone CH230-352F14, WORKING DRA... 56 0.002 1 (AC139589) Rattus norvegicus clone CH230-392N20, *** SEQUENC... 56 0.002 1 (AC114201) Rattus norvegicus clone CH230-215N8, *** SEQUENCI... 56 0.002 1 (BJ395848) Dictyostelium discoideum cDNA clone:dds40l11, 5' ... 56 0.002 1 (BJ336344) Dictyostelium discoideum cDNA clone:dda53g15, 5' ... 56 0.002 1 (ET538936) fcg3x.227550e06 C. graminicola genomic sequence G... 54 0.006 1 (ET532726) fcg3x.224750n15.f C. graminicola genomic sequence... 54 0.006 1 (ET520840) fcg3x.220250d22 C. graminicola genomic sequence G... 54 0.006 1 (AC176766) Strongylocentrotus purpuratus clone R3-30C4, WORK... 38 0.016 2 (AC127418) Mus musculus BAC clone RP24-66J10 from chromosome... 42 0.019 5 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.022 7 (FE750468) CAYF1059.g2 CAYF Petrolisthes cinctipes heart, wh... 52 0.025 1 (AC173644) Strongylocentrotus purpuratus clone R3-1004B18, W... 44 0.042 2 (AC013277) Homo sapiens BAC clone RP11-480N9 from 2, complet... 48 0.055 3 (AC168727) Strongylocentrotus purpuratus clone R3-3010L3, WO... 48 0.059 3 (AC178911) Strongylocentrotus purpuratus clone R3-3115A3, WO... 46 0.080 5 (BV286792) S232P6569RB8.T0 Beagle Canis familiaris STS genom... 50 0.098 1 (AC093356) Mus musculus chromosome 5, clone RP23-21B19, comp... 50 0.098 1 (EU094835) Humulus lupulus clone ACC2-E14-4 microsatellite s... 50 0.098 1 (AP007167) Aspergillus oryzae RIB40 genomic DNA, SC020. 50 0.098 1 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 50 0.098 1 (AL355474) Human DNA sequence from clone RP11-55C5 on chromo... 50 0.098 1 (AC124013) Homo sapiens BAC clone RP13-615K3 from 4, complet... 50 0.098 1 (AC025038) Homo sapiens chromosome 10 clone RP11-443O13, com... 50 0.098 1 (AC129650) Rattus norvegicus clone CH230-9H1, *** SEQUENCING... 50 0.098 1 (AC127179) Rattus norvegicus clone CH230-121D22, *** SEQUENC... 50 0.098 1 (AC095595) Rattus norvegicus clone CH230-8F13, WORKING DRAFT... 50 0.098 1 (AC021447) Homo sapiens chromosome 10 clone RP11-19K19 map 1... 50 0.098 1 (FH294089) CHO_OF4216xe17f1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.098 1 (DE843016) Macropus eugenii DNA, BAC clone: MEB1-003F15_R, 3... 50 0.098 1 (EH035334) HA_MX0_81b01_SP6 Lobster Multiple Tissues, Normal... 50 0.098 1 (AU061544) Dictyostelium discoideum slug cDNA, clone SLE603. 50 0.098 1 (CA913118) PCSC21525 Scarlet Runner Bean Suspensor Region Tr... 50 0.098 1 (CA913117) PCSC17377 Scarlet Runner Bean Suspensor Region Tr... 50 0.098 1 (BJ426526) Dictyostelium discoideum cDNA clone:ddv59f11, 5' ... 50 0.098 1 (FG906928) UCRVU08_CCNS4850_b1 Cowpea IT97K-461-4 Mixed Tiss... 50 0.098 1 (FG848941) UCRVU05_CCNN16009_b1 Cowpea IT84S-2049 Mixed Tiss... 50 0.098 1 (FE704212) Pv036D_M13F_G02.ab1 Phaseolus vulgaris cv Early g... 50 0.098 1 (FE704211) Pv036D_M13R_G02.ab1 Phaseolus vulgaris cv Early g... 50 0.098 1 (AC084065) Mus musculus chromosome 16 clone RP23-2K17, WORKI... 46 0.20 2 (AC136531) Rattus norvegicus clone CH230-179D17, WORKING DRA... 48 0.21 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 0.21 2 (AC140244) Mus musculus BAC clone RP24-285J23 from 14, compl... 34 0.22 2 (AL954248) Pan troglodytes chromosome 22 clone PTB-061A04 ma... 34 0.22 2 (AC111900) Rattus norvegicus clone CH230-64P8, *** SEQUENCIN... 48 0.23 2 (AL049749) Human DNA sequence from clone RP1-293L6 on chromo... 34 0.23 2 (BX284661) Human DNA sequence from clone RP1-293L6 on chromo... 34 0.25 2 (AC096511) Homo sapiens X BAC RP11-606J16 (Roswell Park Canc... 46 0.29 2 (CQ341825) Sequence 15919 from Patent WO0157275. 34 0.29 2 (CQ304565) Sequence 15670 from Patent WO0186003. 34 0.29 2 (CQ267545) Sequence 15806 from Patent WO0157277. 34 0.29 2 (CQ229410) Sequence 16249 from Patent WO0157273. 34 0.29 2 (CQ206011) Sequence 8288 from Patent WO0157271. 34 0.29 2 (CQ181650) Sequence 13046 from Patent WO0157274. 34 0.29 2 (CQ146205) Sequence 16227 from Patent WO0157276. 34 0.29 2 (CQ107542) Sequence 16401 from Patent WO0157272. 34 0.29 2 (CQ076557) Sequence 12357 from Patent WO0157278. 34 0.29 2 (CQ057281) Sequence 8101 from Patent WO0157270. 34 0.29 2 (EF979005) Mus musculus C57BL/6N IST13090D12HMF1 gene trap e... 34 0.29 2 (EF978233) Mus musculus C57BL/6N IST13090D12BBF1 gene trap e... 34 0.29 2 (CQ329062) Sequence 3156 from Patent WO0157275. 34 0.29 2 (CQ292012) Sequence 3117 from Patent WO0186003. 34 0.29 2 (CQ254933) Sequence 3194 from Patent WO0157277. 34 0.29 2 (CQ216362) Sequence 3201 from Patent WO0157273. 34 0.29 2 (CQ200860) Sequence 3137 from Patent WO0157271. 34 0.29 2 (CQ171725) Sequence 3121 from Patent WO0157274. 34 0.29 2 (CQ133150) Sequence 3172 from Patent WO0157276. 34 0.29 2 (CQ094368) Sequence 3227 from Patent WO0157272. 34 0.29 2 (CQ067322) Sequence 3122 from Patent WO0157278. 34 0.29 2 (CQ052265) Sequence 3085 from Patent WO0157270. 34 0.29 2 (CU222534) Mouse DNA sequence from clone DN-162N18 on chromo... 48 0.39 1 (AC153981) Mus musculus 10 BAC RP24-112H16 (Roswell Park Can... 48 0.39 1 (AC137110) Mus musculus chromosome 7, clone RP23-399P8, comp... 48 0.39 1 (AC132336) Mus musculus BAC clone RP24-230N9 from chromosome... 48 0.39 1 (AC124776) Mus musculus BAC clone RP23-89D11 from 12, comple... 48 0.39 1 (AC123713) Mus musculus chromosome 7, clone RP23-391D20, com... 48 0.39 1 (X78287) C.lacryma-jobi (cv Adlay) Opaque 2 gene. 48 0.39 1 (AL445309) Human DNA sequence from clone RP11-506K6 on chrom... 48 0.39 1 (AL354984) Human DNA sequence from clone RP13-379L11 on chro... 48 0.39 1 (AC104008) Homo sapiens chromosome 8, clone RP11-192I2, comp... 48 0.39 1 (AC058790) Homo sapiens chromosome 22 clone b518b9 map 22q11... 48 0.39 1 (AC008756) Homo sapiens chromosome 16 clone CTD-3028M10, com... 48 0.39 1 (AC007663) Homo sapiens chromosome 22 clone b444p24 map 22q1... 48 0.39 1 (AC007464) Homo sapiens BAC clone RP11-542B5 from 2, complet... 48 0.39 1 (AC006549) Homo sapiens chromosome 22 clone p215k21 map 22q1... 48 0.39 1 (AC006547) Homo sapiens chromosome 22 clone p158l19 map 22q1... 48 0.39 1 (AC000097) Homo sapiens Chromosome 22q11.2 PAC Clone p201m18... 48 0.39 1 (AC135813) Rattus norvegicus clone CH230-337P15, WORKING DRA... 48 0.39 1 (AC121209) Rattus norvegicus clone CH230-185M1, WORKING DRAF... 48 0.39 1 (AC120976) Rattus norvegicus clone CH230-435E10, *** SEQUENC... 48 0.39 1 (AC120107) Rattus norvegicus chromosome 1 clone RP32-274G9 m... 48 0.39 1 (AC118358) Rattus norvegicus clone CH230-231F15, *** SEQUENC... 48 0.39 1 (AC111385) Rattus norvegicus clone CH230-138J8, WORKING DRAF... 48 0.39 1 (AC107000) Rattus norvegicus clone CH230-75M19, WORKING DRAF... 48 0.39 1
>(BJ335648) Dictyostelium discoideum cDNA clone:dda51g05, 5' end, single read. Length = 639
Score = 1267 bits (639), Expect = 0.0 Identities = 639/639 (100%) Strand = Plus / Plus
Query: 1 atattttaaattaaaacatacaattgatgaagttaattcaattttagatttatgttcaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atattttaaattaaaacatacaattgatgaagttaattcaattttagatttatgttcaca 60
Query: 61 tggtagtggtagtggtggtagtgatggtaatactagaggtagtgctaatgaaaagattaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tggtagtggtagtggtggtagtgatggtaatactagaggtagtgctaatgaaaagattaa 120
Query: 121 agtatcaccagaattaggtaatgttatttttgcaagttcagaaatgggttggtgttttag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agtatcaccagaattaggtaatgttatttttgcaagttcagaaatgggttggtgttttag 180
Query: 181 tttagaatcattcgcaaatatttatattgaaacttatggtggtggttttaagagtagtga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tttagaatcattcgcaaatatttatattgaaacttatggtggtggttttaagagtagtga 240
Query: 241 atttgctaaaagattatggggtgatctttattttaatgaaagtacacgtatgtttagaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atttgctaaaagattatggggtgatctttattttaatgaaagtacacgtatgtttagaaa 300
Query: 301 acaagcatcaggaaatggtgaacatgtaagatcatttgtacactttattttaaatccaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acaagcatcaggaaatggtgaacatgtaagatcatttgtacactttattttaaatccaat 360
Query: 361 ttataagatttattcaactgtaattagtgaagagaaaccagtggttgaagcaaccctaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttataagatttattcaactgtaattagtgaagagaaaccagtggttgaagcaaccctaag 420
Query: 421 agaattgggtattaaactttcaaaagaaacttataatttagatattagaccattgttaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 agaattgggtattaaactttcaaaagaaacttataatttagatattagaccattgttaag 480
Query: 481 agttgtattgggttcatttttcggtggtaaatcaaatgcatttgtagatatgttggcagc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 agttgtattgggttcatttttcggtggtaaatcaaatgcatttgtagatatgttggcagc 540
Query: 541 attaccatcaccaattgataatgctagacgtaaagcaacaacactctatacaggtccatt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 attaccatcaccaattgataatgctagacgtaaagcaacaacactctatacaggtccatt 600
Query: 601 gaatggtgagtatggcaggtcattggtggaatgtgatcc 639 ||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gaatggtgagtatggcaggtcattggtggaatgtgatcc 639
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 797,185,805 Number of extensions: 48002939 Number of successful extensions: 4065340 Number of sequences better than 10.0: 472 Length of query: 639 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 616 Effective length of database: 93,106,754,628 Effective search space: 57353760850848 Effective search space used: 57353760850848 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |