Contig-U12722-1
Contig ID Contig-U12722-1
Contig update 2002.12.18
Contig sequence
>Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Contig-U12722-1Q.Seq.d
AACATCAATTGATAAATCATTTCCATTGATTCACTGTATTGAAGAGTTAT
TAACTTATAAATATAAAGATTGTAACTATGATGATAGCCTTTCAATTCCA
TTAAATAATAGTACTGGTAGTAGTAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATTTTGTTATTAATAATAGTAATAATAAAA
ATAATGGAGCAACAACAACAACTACAACAACAACTACTACTACAAATTCA
AATTCAAATTCAACAAAATCAAAAGTAGTTGTTAATGATTCATCACCAAA
TTTAATAAGTGCATCACCAAAAGGGTTAGGTAGTTCACAAGGTTCATTAA
CAACAATTAATAATCAAAAGAAATTAACATTATCTCCACAAAGAGCAAGT
TCAACTACAACAACAAGTGTAAATAAACCACCATTGAAATTAAAGGCAAT
TTCAAGTCCACCAATTACACCAAATGTATCAACACCAGAGAGATGTTTTG
TAATTAATGATAAGAATAAACATGTTATGATATCATCAGAAACTACGATT
CACAATGTTAGTGGACTATCATCAATTAGTACACCAATAGTTAGTGATGC
TGCAATTGCAGAATTAAGTAAATGTAATGACCATGATCAAAAGAAATTTA
CAATATTCTGTACAGATTGTGATCAATTACTATGTGATGAATGTTTAAAT
AACAATCAGCAACAACATGAAAATCATCAATTAAATAAAATCATTCAAGA
AGCTGAAAAAAGAATTGGAGATATTGAATCAATGATAATTACAACTTCAT
TATGTCCAAATAGATTAATTAATAAAAAGAATAAAATTGAAAAAATAATT
CAAGATAGTGCATTGGTTTTAAAAGATACTAAATTGAAAATTACTACTGA
TATCGATACAATGATTGAAAATTTAAAAGAGAGAAAGAATGCATTGATCA
GTCAAATCGATAAAGAATATGAAGAA

Gap no gap
Contig length 976
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 103883
End point 104858
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 6
Link to clone list U12722
List of clone(s)

est1=AHL323F,1,689
est2=CHR560F,164,807
est3=SHA462F,258,866
est4=AHP219F,286,883
est5=AHI148F,373,976
est6=CHQ261F,476,971
Translated Amino Acid sequence
TSIDKSFPLIHCIEELLTYKYKDCNYDDSLSIPLNNSTGSSNNNNNNNNNNNNNNNNFVI
NNSNNKNNGATTTTTTTTTTTNSNSNSTKSKVVVNDSSPNLISASPKGLGSSQGSLTTIN
NQKKLTLSPQRASSTTTTSVNKPPLKLKAISSPPITPNVSTPERCFVINDKNKHVMISSE
TTIHNVSGLSSISTPIVSDAAIAELSKCNDHDQKKFTIFCTDCDQLLCDECLNNNQQQHE
NHQLNKIIQEAEKRIGDIESMIITTSLCPNRLINKKNKIEKIIQDSALVLKDTKLKITTD
IDTMIENLKERKNALISQIDKEYEE


Translated Amino Acid sequence (All Frames)
Frame A:
nin**iisidsly*rvinl*i*rl*l***pfnsik**yw******************fcy
******k*wsnnnnynnnyyykfkfkfnkikssc**fitkfnkcitkrvr*ftrfinnn*
*skeiniistkskfnynnkck*ttieikgnfkstnytkcintremfcn***e*tcydiir
nydsqc*wtiin*ytns**ccncrik*m**p*skeiynilyrl*sitm**mfk*qsatt*
kssik*nhsrs*kknwry*indnynfimsk*in**ke*n*knnsr*cigfkry*ienyy*
yrynd*kfkrekecidqsnr*ri*r


Frame B:
TSIDKSFPLIHCIEELLTYKYKDCNYDDSLSIPLNNSTGSSNNNNNNNNNNNNNNNNFVI
NNSNNKNNGATTTTTTTTTTTNSNSNSTKSKVVVNDSSPNLISASPKGLGSSQGSLTTIN
NQKKLTLSPQRASSTTTTSVNKPPLKLKAISSPPITPNVSTPERCFVINDKNKHVMISSE
TTIHNVSGLSSISTPIVSDAAIAELSKCNDHDQKKFTIFCTDCDQLLCDECLNNNQQQHE
NHQLNKIIQEAEKRIGDIESMIITTSLCPNRLINKKNKIEKIIQDSALVLKDTKLKITTD
IDTMIENLKERKNALISQIDKEYEE


Frame C:
hqlinhfh*ftvlksy*linikivtmmiafqfh*iivlvvviiiiiiiiiiiiiiiilll
iiviikimeqqqqlqqqlllqiqiqiqqnqk*llmihhqi**vhhqkg*vvhkvh*qqli
ikrn*hylhkeqvqlqqqv*inhh*n*rqfqvhqlhqmyqhqrdvl*lmirinml*yhqk
lrftmlvdyhqlvhq*lvmlqlqn*vnvmtmikrnlqysvqivinyyvmnv*itisnnmk
iin*iksfkklkkeleilnq**lqlhyvqid*likriklkk*fkivhwf*kiln*kllli
siq*lki*krermh*svksiknmk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12722-1 (Contig-U12722-1Q)
/CSM_Contig/Contig-U12722-1Q.Seq.d
(976 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Conti... 1112 0.0
Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U09772-1 (Contig-U09772-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U08850-1 (Contig-U08850-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U08753-1 (Contig-U08753-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U14197-1 (Contig-U14197-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U13709-1 (Contig-U13709-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U11706-1 (Contig-U11706-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U11348-1 (Contig-U11348-1Q) /CSM_Contig/Conti... 38 0.017

>Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Contig-U12722-1Q.Seq.d
Length = 976

Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus


Query: 246 attcaaattcaaattcaacaaaatcaaaagtagttgttaatgattcatcaccaaatttaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attcaaattcaaattcaacaaaatcaaaagtagttgttaatgattcatcaccaaatttaa 305


Query: 306 taagtgcatcaccaaaagggttaggtagttcacaaggttcattaacaacaattaataatc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taagtgcatcaccaaaagggttaggtagttcacaaggttcattaacaacaattaataatc 365


Query: 366 aaaagaaattaacattatctccacaaagagcaagttcaactacaacaacaagtgtaaata 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaagaaattaacattatctccacaaagagcaagttcaactacaacaacaagtgtaaata 425


Query: 426 aaccaccattgaaattaaaggcaatttcaagtccaccaattacaccaaatgtatcaacac 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaccaccattgaaattaaaggcaatttcaagtccaccaattacaccaaatgtatcaacac 485


Query: 486 cagagagatgttttgtaattaatgataagaataaacatgttatgatatcatcagaaacta 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagagagatgttttgtaattaatgataagaataaacatgttatgatatcatcagaaacta 545


Query: 546 cgattcacaatgttagtggactatcatcaattagtacaccaatagttagtgatgctgcaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgattcacaatgttagtggactatcatcaattagtacaccaatagttagtgatgctgcaa 605


Query: 606 ttgcagaattaagtaaatgtaatgaccatgatcaaaagaaatttacaatattctgtacag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgcagaattaagtaaatgtaatgaccatgatcaaaagaaatttacaatattctgtacag 665


Query: 666 attgtgatcaattactatgtgatgaatgtttaaataacaatcagcaacaacatgaaaatc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 attgtgatcaattactatgtgatgaatgtttaaataacaatcagcaacaacatgaaaatc 725


Query: 726 atcaattaaataaaatcattcaagaagctgaaaaaagaattggagatattgaatcaatga 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atcaattaaataaaatcattcaagaagctgaaaaaagaattggagatattgaatcaatga 785


Query: 786 taattacaacttcattatgtc 806
|||||||||||||||||||||
Sbjct: 786 taattacaacttcattatgtc 806


Score = 252 bits (127), Expect = 6e-67
Identities = 127/127 (100%)
Strand = Plus / Plus


Query: 850 tcaagatagtgcattggttttaaaagatactaaattgaaaattactactgatatcgatac 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tcaagatagtgcattggttttaaaagatactaaattgaaaattactactgatatcgatac 909


Query: 910 aatgattgaaaatttaaaagagagaaagaatgcattgatcagtcaaatcgataaagaata 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aatgattgaaaatttaaaagagagaaagaatgcattgatcagtcaaatcgataaagaata 969


Query: 970 tgaagaa 976
|||||||
Sbjct: 970 tgaagaa 976


Score = 244 bits (123), Expect = 2e-64
Identities = 123/123 (100%)
Strand = Plus / Plus


Query: 1 aacatcaattgataaatcatttccattgattcactgtattgaagagttattaacttataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacatcaattgataaatcatttccattgattcactgtattgaagagttattaacttataa 60


Query: 61 atataaagattgtaactatgatgatagcctttcaattccattaaataatagtactggtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atataaagattgtaactatgatgatagcctttcaattccattaaataatagtactggtag 120


Query: 121 tag 123
|||
Sbjct: 121 tag 123


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 402 caactacaacaacaa 416
|||||||||||||||
Sbjct: 219 caactacaacaacaa 233


>Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Contig-U03215-1Q.Seq.d
Length = 868

Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 249 caaattcaaattcaacaaaatcaa 272
||||||||||||||||||||||||
Sbjct: 567 caaattcaaattcaacaaaatcaa 590


>Contig-U09772-1 (Contig-U09772-1Q) /CSM_Contig/Contig-U09772-1Q.Seq.d
Length = 1099

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 246 attcaaattcaaattcaacaa 266
|||||||||||||||||||||
Sbjct: 1052 attcaaattcaaattcaacaa 1072


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,929
Number of Sequences: 6905
Number of extensions: 18929
Number of successful extensions: 2321
Number of sequences better than 10.0: 335
length of query: 976
length of database: 5,674,871
effective HSP length: 16
effective length of query: 960
effective length of database: 5,564,391
effective search space: 5341815360
effective search space used: 5341815360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA
Query= Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Contig-U12722-1Q.Seq.d
(976 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ391633) Dictyostelium discoideum cDNA clone:dds24l16, 5' ... 1057 0.0 1
(BJ371335) Dictyostelium discoideum cDNA clone:ddc57g15, 5' ... 1057 0.0 1
(BJ336562) Dictyostelium discoideum cDNA clone:dda54h12, 5' ... 1023 0.0 1
(BJ338349) Dictyostelium discoideum cDNA clone:dda61e06, 5' ... 1009 0.0 2
(BJ334692) Dictyostelium discoideum cDNA clone:dda47o11, 5' ... 862 0.0 2
(BJ336231) Dictyostelium discoideum cDNA clone:dda53n05, 5' ... 817 0.0 2
(BJ370573) Dictyostelium discoideum cDNA clone:ddc54i16, 5' ... 658 0.0 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 30 0.011 11
(ER970393) AF__Bc0039M16f AF__Bc Aquilegia formosa genomic, ... 34 0.057 4
(ET662148) MUGQ_CH252P449O06T7_CP862_017 CHORI-252 Vervet Mo... 50 0.16 1
(ET427784) MUGQ_CH252P423D03T7_CP811_014 CHORI-252 Vervet Mo... 50 0.16 1
(ET167303) MUGQ_CH252P364N08T7_CP685_020 CHORI-252 Vervet Mo... 50 0.16 1
(ER604192) 1093016266362 Global-Ocean-Sampling_GS-36-01-01-2... 46 0.62 2
(AC206409) Pongo abelii BAC clone CH276-292F21 from chromoso... 48 0.63 1
(ER407167) 1095366027824 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.63 1
(EJ644902) 1093012264380 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.63 1
(EJ641581) 1093011946796 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.63 1
(EJ081384) 1095460037489 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.63 1
(EJ012977) 1095407072382 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.63 1
(AG729682) Macaca fuscata fuscata DNA, clone: MSB2-184D07_R,... 48 0.63 1
(AJ926397) Theileria annulata EST, clone tam014f06_q1k. 48 0.63 1
(EX357413) GQ03122.B7_K08 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1
(EX355864) GQ03118.B7_H13 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1
(EX349833) GQ03107.SP6_N19 GQ031 - Xylem Scrapings (Normaliz... 48 0.63 1
(EX349467) GQ03107.B7_N19 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1
(EX347590) GQ03104.SP6_L14 GQ031 - Xylem Scrapings (Normaliz... 48 0.63 1
(EX346896) GQ03104.B7.1_L14 GQ031 - Xylem Scrapings (Normali... 48 0.63 1
(EX346162) GQ03103.SP6.1_K07 GQ031 - Xylem Scrapings (Normal... 48 0.63 1
(EX345816) GQ03103.B7_K07 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1
(EX345454) GQ03103.B7.1_K07 GQ031 - Xylem Scrapings (Normali... 48 0.63 1
(EX345092) GQ03102.SP6_K07 GQ031 - Xylem Scrapings (Normaliz... 48 0.63 1
(EX344749) GQ03102.SP6.1_K07 GQ031 - Xylem Scrapings (Normal... 48 0.63 1
(EX344392) GQ03102.B7_K07 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1
(EX344030) GQ03102.B7.1_K07 GQ031 - Xylem Scrapings (Normali... 48 0.63 1
(EX316018) GQ02809.SP6_D22 GQ028 - Cambium / phloem scrappin... 48 0.63 1
(EX315666) GQ02809.B7_D22 GQ028 - Cambium / phloem scrapping... 48 0.63 1
(EX312653) GQ02804.SP6_F06 GQ028 - Cambium / phloem scrappin... 48 0.63 1
(EX312312) GQ02804.B7_F06 GQ028 - Cambium / phloem scrapping... 48 0.63 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.64 11
(AB089315) Dictyostelium discoideum dwwa mRNA for DWWA, part... 44 1.1 2
(AC224859) Bos taurus clone CH240-473O20, WORKING DRAFT SEQU... 42 1.4 5
(DH541017) Rattus norvegicus DNA, BAC clone: RNB1-045M02, 3'... 42 1.9 2
(EX767778) RR3C715JQ RR3(NY) Raphanus raphanistrum subsp. ra... 38 2.0 2
(AM638437) Entamoeba dispar GSS, clone dispar52d05.p1k. 34 2.2 3
(AR556719) Sequence 11850 from patent US 6747137. 34 2.3 4
(AC210348) Solanum lycopersicum chromosome 7 clone C07HBa001... 36 2.4 6
(EJ012586) 1095407053938 Global-Ocean-Sampling_GS-26-01-01-1... 40 2.5 2
(AP007166) Aspergillus oryzae RIB40 genomic DNA, SC113. 46 2.5 1
(AC136265) Rattus norvegicus clone CH230-361L10, *** SEQUENC... 46 2.5 1
(AC118149) Rattus norvegicus clone CH230-371O22, WORKING DRA... 46 2.5 1
(AC178933) Strongylocentrotus purpuratus clone R3-3115M23, W... 46 2.5 1
(AC168370) Strongylocentrotus purpuratus clone R3-4013M12, W... 46 2.5 1
(EK460035) 1095469050275 Global-Ocean-Sampling_GS-32-01-01-1... 46 2.5 1
(BZ473386) BONMP86TR BO_1.6_2_KB_tot Brassica oleracea genom... 46 2.5 1
(BZ172085) CH230-464G22.TV CHORI-230 Segment 2 Rattus norveg... 46 2.5 1
(BX187433) Danio rerio genomic clone DKEY-191G7, genomic sur... 46 2.5 1
(CF349482) fc2865.e Rose Petals (Fragrant Cloud) Lambda Zap ... 46 2.5 1
(BB138307) Mus musculus adult male bone cDNA, RIKEN full-len... 46 2.5 1
(EW901324) G894P5135FG19.T0 Ixodes scapularis Pooled Non-inf... 46 2.5 1
(EW891189) G894P562FL22.T0 Ixodes scapularis Pooled Non-infe... 46 2.5 1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 46 2.5 1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 30 3.6 11
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 30 3.8 11
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 4.0 10
(AL929603) Trypanosoma brucei chromosome 1, complete sequence. 34 4.2 2
(ER497468) 1093015353997 Global-Ocean-Sampling_GS-35-01-01-1... 32 4.2 3
(AC198716) Rhesus Macaque BAC CH250-425H10 () complete sequ... 40 5.3 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 5.9 10
(AC138267) Mus musculus chromosome 7, clone RP23-367B1, comp... 38 6.1 5
(AM635069) Entamoeba dispar GSS, clone dispar131d12.p1k. 40 6.3 2
(AL482472) T. brucei sheared genomic DNA clone 254h03, forwa... 34 6.4 2
(CJ742407) Ipomoea nil cDNA clone:jmsf24e11, 5' end. 42 6.7 2
(AM633569) Entamoeba dispar GSS, clone dispar103c11.p1k. 40 7.1 2
(AC079431) Mus musculus chromosome 16 clone RP23-1J12, WORKI... 44 8.3 2
(CU302411) Zebrafish DNA sequence from clone CH211-63O5 in l... 44 9.8 1
(U62674) Mus musculus histone H2a.2-615 (H2a-615), and hist... 44 9.8 1
(AC127287) Mus musculus BAC clone RP23-345G7 from chromosome... 44 9.8 1
(AC125099) Mus musculus BAC clone RP24-201C14 from 3, comple... 44 9.8 1
(AC093350) Mus musculus chromosome 3, clone RP23-16G3, compl... 44 9.8 1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.8 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.8 1
(AP007223) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.8 1
(AM446789) Vitis vinifera contig VV78X112249.2, whole genome... 44 9.8 1
(AK066113) Oryza sativa Japonica Group cDNA clone:J013051I09... 44 9.8 1
(AC130602) Oryza sativa Japonica Group chromosome 5 clone B1... 44 9.8 1
(AC097176) Oryza sativa Japonica Group chromosome 5 clone OJ... 44 9.8 1
(EA704013) Sequence 82892 from patent US 7365185. 44 9.8 1
(EA703895) Sequence 82774 from patent US 7365185. 44 9.8 1
(EA687965) Sequence 66844 from patent US 7365185. 44 9.8 1
(EA687266) Sequence 66145 from patent US 7365185. 44 9.8 1
(CS350717) Sequence 101 from Patent WO2006013561. 44 9.8 1
(AR451626) Sequence 9 from patent US 6673988. 44 9.8 1
(AL591770) Human chromosome 14 DNA sequence BAC R-1140I5 of ... 44 9.8 1
(AC004982) Homo sapiens PAC clone RP5-1159O4 from 7p21-p22, ... 44 9.8 1
(AC130612) Oryza sativa Japonica Group chromosome 5 clone P0... 44 9.8 1
(CU928661) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.8 1
(CU928118) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.8 1
(CU655934) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.8 1
(AP004844) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.8 1
(AP004239) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.8 1

>(BJ391633) Dictyostelium discoideum cDNA clone:dds24l16, 5' end,
single read.
Length = 609

Score = 1057 bits (533), Expect = 0.0
Identities = 533/533 (100%)
Strand = Plus / Plus


Query: 275 gtagttgttaatgattcatcaccaaatttaataagtgcatcaccaaaagggttaggtagt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 gtagttgttaatgattcatcaccaaatttaataagtgcatcaccaaaagggttaggtagt 77


Query: 335 tcacaaggttcattaacaacaattaataatcaaaagaaattaacattatctccacaaaga 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tcacaaggttcattaacaacaattaataatcaaaagaaattaacattatctccacaaaga 137


Query: 395 gcaagttcaactacaacaacaagtgtaaataaaccaccattgaaattaaaggcaatttca 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcaagttcaactacaacaacaagtgtaaataaaccaccattgaaattaaaggcaatttca 197


Query: 455 agtccaccaattacaccaaatgtatcaacaccagagagatgttttgtaattaatgataag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agtccaccaattacaccaaatgtatcaacaccagagagatgttttgtaattaatgataag 257


Query: 515 aataaacatgttatgatatcatcagaaactacgattcacaatgttagtggactatcatca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aataaacatgttatgatatcatcagaaactacgattcacaatgttagtggactatcatca 317


Query: 575 attagtacaccaatagttagtgatgctgcaattgcagaattaagtaaatgtaatgaccat 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attagtacaccaatagttagtgatgctgcaattgcagaattaagtaaatgtaatgaccat 377


Query: 635 gatcaaaagaaatttacaatattctgtacagattgtgatcaattactatgtgatgaatgt 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gatcaaaagaaatttacaatattctgtacagattgtgatcaattactatgtgatgaatgt 437


Query: 695 ttaaataacaatcagcaacaacatgaaaatcatcaattaaataaaatcattcaagaagct 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaaataacaatcagcaacaacatgaaaatcatcaattaaataaaatcattcaagaagct 497


Query: 755 gaaaaaagaattggagatattgaatcaatgataattacaacttcattatgtcc 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaaaaagaattggagatattgaatcaatgataattacaacttcattatgtcc 550

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,034,492,003
Number of extensions: 65143791
Number of successful extensions: 5395037
Number of sequences better than 10.0: 243
Length of query: 976
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 952
Effective length of database: 97,308,875,965
Effective search space: 92638049918680
Effective search space used: 92638049918680
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 4
Homology vs Protein
Query= Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Contig-U12722-1Q.Seq.d
(976 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q6BHF8) RecName: Full=Autophagy-related protein 23; &CR382139_... 39 0.35
AF210315_1(AF210315|pid:none) Drosophila melanogaster bonus (bon... 38 0.60
AE014297_2932(AE014297|pid:none) Drosophila melanogaster chromos... 38 0.60
CP001291_1756(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 37 1.3
D87895_1(D87895|pid:none) Aspergillus nidulans chiA gene for chi... 36 1.8
JW0067(JW0067)chitinase (EC 3.2.1.14) A - Emericella nidulans 36 1.8
AY355352_1(AY355352|pid:none) Rickettsia japonica strain YM surf... 36 2.3
CR382129_153(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 36 2.3
BC096849_1(BC096849|pid:none) Danio rerio tripartite motif-conta... 35 3.0
AY598454_1(AY598454|pid:none) Danio rerio transcriptional interm... 35 3.0
S20074(S20074;D41710) promastigote surface antigen P2 (clone 4.6... 35 3.0
CT005251_98(CT005251|pid:none) Leishmania major strain Friedlin,... 35 3.0
AM270409_31(AM270409|pid:none) Aspergillus niger contig An18c017... 35 3.0
S56026(S56026;S56861;S57743) hypothetical protein YJL084c - yeas... 35 3.9
DQ062789_1(DQ062789|pid:none) Drosophila simulans unknown (CG982... 35 3.9
EU638047_1(EU638047|pid:none) Eleginops maclovinus mixed-lineage... 35 3.9
AE014297_844(AE014297|pid:none) Drosophila melanogaster chromoso... 35 3.9
AC116957_76(AC116957|pid:none) Dictyostelium discoideum chromoso... 35 5.1
(Q555D2) RecName: Full=Uncharacterized protein DDB_G0274915; 35 5.1
AE014298_935(AE014298|pid:none) Drosophila melanogaster chromoso... 35 5.1
AF044255_1(AF044255|pid:none) Dictyostelium discoideum NOSA (nos... 35 5.1
(Q9C0F0) RecName: Full=Putative Polycomb group protein ASXL3; Al... 35 5.1
AB051500_1(AB051500|pid:none) Homo sapiens mRNA for KIAA1713 pro... 35 5.1
(P32323) RecName: Full=A-agglutinin anchorage subunit; AltName: ... 35 5.1
(Q96WV6) RecName: Full=Uncharacterized threonine-rich GPI-anchor... 35 5.1
CR382127_233(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 34 6.7
(P34611) RecName: Full=B-box type zinc finger protein ncl-1; &A... 34 6.7
BX842646_188(BX842646|pid:none) Bdellovibrio bacteriovorus compl... 34 6.7
FM992688_1317(FM992688|pid:none) Candida dubliniensis CD36 chrom... 34 6.7
(Q54S20) RecName: Full=Mediator of RNA polymerase II transcripti... 34 6.7
AM423521_3(AM423521|pid:none) Vitis vinifera contig VV78X070500.... 34 6.7
U56860_5(U56860|pid:none) Caenorhabditis elegans cosmid M6, comp... 34 8.7
FM992695_879(FM992695|pid:none) Candida dubliniensis CD36 chromo... 34 8.7
AM502248_83(AM502248|pid:none) Leishmania infantum chromosome 30. 34 8.7
T29185(T29185)hypothetical protein M6.1 - Caenorhabditis elegans 34 8.7
CP001227_359(CP001227|pid:none) Rickettsia peacockii str. Rustic... 34 8.7
U56860_4(U56860|pid:none) Caenorhabditis elegans cosmid M6, comp... 34 8.7
CR940347_771(CR940347|pid:none) Theileria annulata strain Ankara... 34 8.7
U56860_3(U56860|pid:none) Caenorhabditis elegans cosmid M6, comp... 34 8.7
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg... 34 8.7

>(Q6BHF8) RecName: Full=Autophagy-related protein 23;
&CR382139_808(CR382139|pid:none)
Length = 905

Score = 38.5 bits (88), Expect = 0.35
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Frame = +2

Query: 269 SKVVVNDSSPNLISASPKGLGSSQGS-LTTINNQ--KKLTLSPQRASSTTTTSVNK--PP 433
S++ N +SP++++ P GL + Q + T++N+ K LT +P + SVNK P
Sbjct: 27 SRLSTNTTSPDILAKHPHGLSAKQDARRNTVHNETPKGLTATPLTKKAEPLYSVNKRIPL 86

Query: 434 LKLKAISSPPI----TPNVSTPERCFVINDKNKHVMISSETTIHNVSGLSSISTPIVSD 598
+A + P + R + + ++H S++ +HN SG S+ ++ + SD
Sbjct: 87 TSPRATNQPNLDSLKKSKTKLDARLYELKSSSRHGSPSNKENMHN-SGKSTQASQLSSD 144

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 945,030,822
Number of extensions: 15021523
Number of successful extensions: 38354
Number of sequences better than 10.0: 40
Number of HSP's gapped: 38047
Number of HSP's successfully gapped: 41
Length of query: 325
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 196
Effective length of database: 633,664,753
Effective search space: 124198291588
Effective search space used: 124198291588
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.88 gvh: 0.34 alm: 0.43 top: 0.43 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
24.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U12722-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0