Contig-U12722-1 |
Contig ID |
Contig-U12722-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
976 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
103883 |
End point |
104858 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
6 |
Number of EST |
6 |
Link to clone list |
U12722 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 2 |
Homology vs DNA |
Query= Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Contig-U12722-1Q.Seq.d (976 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ391633) Dictyostelium discoideum cDNA clone:dds24l16, 5' ... 1057 0.0 1 (BJ371335) Dictyostelium discoideum cDNA clone:ddc57g15, 5' ... 1057 0.0 1 (BJ336562) Dictyostelium discoideum cDNA clone:dda54h12, 5' ... 1023 0.0 1 (BJ338349) Dictyostelium discoideum cDNA clone:dda61e06, 5' ... 1009 0.0 2 (BJ334692) Dictyostelium discoideum cDNA clone:dda47o11, 5' ... 862 0.0 2 (BJ336231) Dictyostelium discoideum cDNA clone:dda53n05, 5' ... 817 0.0 2 (BJ370573) Dictyostelium discoideum cDNA clone:ddc54i16, 5' ... 658 0.0 2 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 30 0.011 11 (ER970393) AF__Bc0039M16f AF__Bc Aquilegia formosa genomic, ... 34 0.057 4 (ET662148) MUGQ_CH252P449O06T7_CP862_017 CHORI-252 Vervet Mo... 50 0.16 1 (ET427784) MUGQ_CH252P423D03T7_CP811_014 CHORI-252 Vervet Mo... 50 0.16 1 (ET167303) MUGQ_CH252P364N08T7_CP685_020 CHORI-252 Vervet Mo... 50 0.16 1 (ER604192) 1093016266362 Global-Ocean-Sampling_GS-36-01-01-2... 46 0.62 2 (AC206409) Pongo abelii BAC clone CH276-292F21 from chromoso... 48 0.63 1 (ER407167) 1095366027824 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.63 1 (EJ644902) 1093012264380 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.63 1 (EJ641581) 1093011946796 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.63 1 (EJ081384) 1095460037489 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.63 1 (EJ012977) 1095407072382 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.63 1 (AG729682) Macaca fuscata fuscata DNA, clone: MSB2-184D07_R,... 48 0.63 1 (AJ926397) Theileria annulata EST, clone tam014f06_q1k. 48 0.63 1 (EX357413) GQ03122.B7_K08 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1 (EX355864) GQ03118.B7_H13 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1 (EX349833) GQ03107.SP6_N19 GQ031 - Xylem Scrapings (Normaliz... 48 0.63 1 (EX349467) GQ03107.B7_N19 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1 (EX347590) GQ03104.SP6_L14 GQ031 - Xylem Scrapings (Normaliz... 48 0.63 1 (EX346896) GQ03104.B7.1_L14 GQ031 - Xylem Scrapings (Normali... 48 0.63 1 (EX346162) GQ03103.SP6.1_K07 GQ031 - Xylem Scrapings (Normal... 48 0.63 1 (EX345816) GQ03103.B7_K07 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1 (EX345454) GQ03103.B7.1_K07 GQ031 - Xylem Scrapings (Normali... 48 0.63 1 (EX345092) GQ03102.SP6_K07 GQ031 - Xylem Scrapings (Normaliz... 48 0.63 1 (EX344749) GQ03102.SP6.1_K07 GQ031 - Xylem Scrapings (Normal... 48 0.63 1 (EX344392) GQ03102.B7_K07 GQ031 - Xylem Scrapings (Normalize... 48 0.63 1 (EX344030) GQ03102.B7.1_K07 GQ031 - Xylem Scrapings (Normali... 48 0.63 1 (EX316018) GQ02809.SP6_D22 GQ028 - Cambium / phloem scrappin... 48 0.63 1 (EX315666) GQ02809.B7_D22 GQ028 - Cambium / phloem scrapping... 48 0.63 1 (EX312653) GQ02804.SP6_F06 GQ028 - Cambium / phloem scrappin... 48 0.63 1 (EX312312) GQ02804.B7_F06 GQ028 - Cambium / phloem scrapping... 48 0.63 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.64 11 (AB089315) Dictyostelium discoideum dwwa mRNA for DWWA, part... 44 1.1 2 (AC224859) Bos taurus clone CH240-473O20, WORKING DRAFT SEQU... 42 1.4 5 (DH541017) Rattus norvegicus DNA, BAC clone: RNB1-045M02, 3'... 42 1.9 2 (EX767778) RR3C715JQ RR3(NY) Raphanus raphanistrum subsp. ra... 38 2.0 2 (AM638437) Entamoeba dispar GSS, clone dispar52d05.p1k. 34 2.2 3 (AR556719) Sequence 11850 from patent US 6747137. 34 2.3 4 (AC210348) Solanum lycopersicum chromosome 7 clone C07HBa001... 36 2.4 6 (EJ012586) 1095407053938 Global-Ocean-Sampling_GS-26-01-01-1... 40 2.5 2 (AP007166) Aspergillus oryzae RIB40 genomic DNA, SC113. 46 2.5 1 (AC136265) Rattus norvegicus clone CH230-361L10, *** SEQUENC... 46 2.5 1 (AC118149) Rattus norvegicus clone CH230-371O22, WORKING DRA... 46 2.5 1 (AC178933) Strongylocentrotus purpuratus clone R3-3115M23, W... 46 2.5 1 (AC168370) Strongylocentrotus purpuratus clone R3-4013M12, W... 46 2.5 1 (EK460035) 1095469050275 Global-Ocean-Sampling_GS-32-01-01-1... 46 2.5 1 (BZ473386) BONMP86TR BO_1.6_2_KB_tot Brassica oleracea genom... 46 2.5 1 (BZ172085) CH230-464G22.TV CHORI-230 Segment 2 Rattus norveg... 46 2.5 1 (BX187433) Danio rerio genomic clone DKEY-191G7, genomic sur... 46 2.5 1 (CF349482) fc2865.e Rose Petals (Fragrant Cloud) Lambda Zap ... 46 2.5 1 (BB138307) Mus musculus adult male bone cDNA, RIKEN full-len... 46 2.5 1 (EW901324) G894P5135FG19.T0 Ixodes scapularis Pooled Non-inf... 46 2.5 1 (EW891189) G894P562FL22.T0 Ixodes scapularis Pooled Non-infe... 46 2.5 1 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 46 2.5 1 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 30 3.6 11 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 30 3.8 11 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 4.0 10 (AL929603) Trypanosoma brucei chromosome 1, complete sequence. 34 4.2 2 (ER497468) 1093015353997 Global-Ocean-Sampling_GS-35-01-01-1... 32 4.2 3 (AC198716) Rhesus Macaque BAC CH250-425H10 () complete sequ... 40 5.3 2 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 5.9 10 (AC138267) Mus musculus chromosome 7, clone RP23-367B1, comp... 38 6.1 5 (AM635069) Entamoeba dispar GSS, clone dispar131d12.p1k. 40 6.3 2 (AL482472) T. brucei sheared genomic DNA clone 254h03, forwa... 34 6.4 2 (CJ742407) Ipomoea nil cDNA clone:jmsf24e11, 5' end. 42 6.7 2 (AM633569) Entamoeba dispar GSS, clone dispar103c11.p1k. 40 7.1 2 (AC079431) Mus musculus chromosome 16 clone RP23-1J12, WORKI... 44 8.3 2 (CU302411) Zebrafish DNA sequence from clone CH211-63O5 in l... 44 9.8 1 (U62674) Mus musculus histone H2a.2-615 (H2a-615), and hist... 44 9.8 1 (AC127287) Mus musculus BAC clone RP23-345G7 from chromosome... 44 9.8 1 (AC125099) Mus musculus BAC clone RP24-201C14 from 3, comple... 44 9.8 1 (AC093350) Mus musculus chromosome 3, clone RP23-16G3, compl... 44 9.8 1 (AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.8 1 (AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.8 1 (AP007223) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.8 1 (AM446789) Vitis vinifera contig VV78X112249.2, whole genome... 44 9.8 1 (AK066113) Oryza sativa Japonica Group cDNA clone:J013051I09... 44 9.8 1 (AC130602) Oryza sativa Japonica Group chromosome 5 clone B1... 44 9.8 1 (AC097176) Oryza sativa Japonica Group chromosome 5 clone OJ... 44 9.8 1 (EA704013) Sequence 82892 from patent US 7365185. 44 9.8 1 (EA703895) Sequence 82774 from patent US 7365185. 44 9.8 1 (EA687965) Sequence 66844 from patent US 7365185. 44 9.8 1 (EA687266) Sequence 66145 from patent US 7365185. 44 9.8 1 (CS350717) Sequence 101 from Patent WO2006013561. 44 9.8 1 (AR451626) Sequence 9 from patent US 6673988. 44 9.8 1 (AL591770) Human chromosome 14 DNA sequence BAC R-1140I5 of ... 44 9.8 1 (AC004982) Homo sapiens PAC clone RP5-1159O4 from 7p21-p22, ... 44 9.8 1 (AC130612) Oryza sativa Japonica Group chromosome 5 clone P0... 44 9.8 1 (CU928661) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.8 1 (CU928118) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.8 1 (CU655934) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.8 1 (AP004844) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.8 1 (AP004239) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.8 1
>(BJ391633) Dictyostelium discoideum cDNA clone:dds24l16, 5' end, single read. Length = 609
Score = 1057 bits (533), Expect = 0.0 Identities = 533/533 (100%) Strand = Plus / Plus
Query: 275 gtagttgttaatgattcatcaccaaatttaataagtgcatcaccaaaagggttaggtagt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 gtagttgttaatgattcatcaccaaatttaataagtgcatcaccaaaagggttaggtagt 77
Query: 335 tcacaaggttcattaacaacaattaataatcaaaagaaattaacattatctccacaaaga 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 tcacaaggttcattaacaacaattaataatcaaaagaaattaacattatctccacaaaga 137
Query: 395 gcaagttcaactacaacaacaagtgtaaataaaccaccattgaaattaaaggcaatttca 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 gcaagttcaactacaacaacaagtgtaaataaaccaccattgaaattaaaggcaatttca 197
Query: 455 agtccaccaattacaccaaatgtatcaacaccagagagatgttttgtaattaatgataag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 agtccaccaattacaccaaatgtatcaacaccagagagatgttttgtaattaatgataag 257
Query: 515 aataaacatgttatgatatcatcagaaactacgattcacaatgttagtggactatcatca 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 aataaacatgttatgatatcatcagaaactacgattcacaatgttagtggactatcatca 317
Query: 575 attagtacaccaatagttagtgatgctgcaattgcagaattaagtaaatgtaatgaccat 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 attagtacaccaatagttagtgatgctgcaattgcagaattaagtaaatgtaatgaccat 377
Query: 635 gatcaaaagaaatttacaatattctgtacagattgtgatcaattactatgtgatgaatgt 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gatcaaaagaaatttacaatattctgtacagattgtgatcaattactatgtgatgaatgt 437
Query: 695 ttaaataacaatcagcaacaacatgaaaatcatcaattaaataaaatcattcaagaagct 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 ttaaataacaatcagcaacaacatgaaaatcatcaattaaataaaatcattcaagaagct 497
Query: 755 gaaaaaagaattggagatattgaatcaatgataattacaacttcattatgtcc 807 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gaaaaaagaattggagatattgaatcaatgataattacaacttcattatgtcc 550
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,034,492,003 Number of extensions: 65143791 Number of successful extensions: 5395037 Number of sequences better than 10.0: 243 Length of query: 976 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 952 Effective length of database: 97,308,875,965 Effective search space: 92638049918680 Effective search space used: 92638049918680 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
3 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |