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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01980-1
Contig ID Contig-U01980-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Contig-U01980-1Q.Seq.d
TTTGGTTCCAGTTGTCCGATGGATTCGGGATGGGTTTGTGGGTGTTGGTG
GAAGGGTGGGGCCCCACTCCTTTATTGCCTATCCGGGATTTTAGGGTGAA
GCNGGATTTCCTTTGTGGCCAATGTTTCCAATTCCTTGATTGCCAATTGG
TTATCCCAGGTGGGAAATTGACCGGTTTTTACACCTTATAATGGTCAAAA
GAATTTTGTTTACGTGATGTTTTCAAGGCTAAATGCTCCCCACGGGTCCC
AAAGGAAACTCAGTATGGTTTACCTTTGAAAATCACCACTTTCGATAAGT
GTCCAGGTCTTCGAATTGTTTTCATTCTCTTGTCACTTGTCCGAACTAAC
CGGTTTGGTGGCGTTTGCGGTGTAGGTCGTTTATTCGGTGCTGGGTCAAG
AGCTCGTTTAGGGTTATGCATCTTTTGTAGGGGACAATTCTTTCAAAATT
GTTATGAAACTTCAATGGTTTTCTCAAAACTCTTAAAAAGACCTGATAAA
TTAATTATCATTAAATCTGGACAATATCCAATCACTTCTGAAAATGCTCG
TCAAATTAATTCAAAACTTGATGAAAATGATTGTTTTGAAATTCAAAATT
CTTTCCATATGAAATCATTAGTTGAATCAAATGAATAATAAATTAAAAAT
AAATTAAAAATAAATTAAAAAAAAAAATTAAAAAAAACAAAAAAAA
Gap no gap
Contig length 696
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U01980
List of clone(s) 

est1=SSL868Z,1,697
Translated Amino Acid sequence 
wfqlsdgfgmglwvlvegwgptpllpirdfrvkxdflcgqcfqfldcqlvipggkltgfy
tl*WSKEFCLRDVFKAKCSPRVPKETQYGLPLKITTFDKCPGLRIVFILLSLVRTNRFGG
VCGVGRLFGAGSRARLGLCIFCRGQFFQNCYETSMVFSKLLKRPDKLIIIKSGQYPITSE
NARQINSKLDENDCFEIQNSFHMKSLVESNE**iknklkin*kkklkktkk
Translated Amino Acid sequence (All Frames) 
Frame A:
fgsscpmdsgwvcgcwwkggapllyclsgilg*sxisfvanvsnslianwlsqvgn*pvf
tpyngqknfvyvmfsrlnaphgsqrklsmvyl*ksplsisvqvfelfsfschlseltglv
afav*vvysvlgqelv*gyasfvgdnsfkivmklqwfsqns*kdlin*lslnldniqsll
kmlvkliqnlmkmivlkfkilsi*nh*lnqmnnklkin*k*ikkkn*kkqkk


Frame B:
lvpvvrwirdgfvgvggrvgphsfiaypgf*geagfplwpmfpip*lpigyprweidrfl
hlimvkrilft*cfqg*mlptgpkgnsvwftfenhhfr*vsrssncfhslvtcpn*pvww
rlrcrsfircwvkssfrvmhll*gtilskll*nfngflktlkkt**inyh*iwtisnhf*
kcssn*fkt**k*lf*nskffpyeiis*ik*iin*k*iknklkkkikknkk


Frame C:
wfqlsdgfgmglwvlvegwgptpllpirdfrvkxdflcgqcfqfldcqlvipggkltgfy
tl*WSKEFCLRDVFKAKCSPRVPKETQYGLPLKITTFDKCPGLRIVFILLSLVRTNRFGG
VCGVGRLFGAGSRARLGLCIFCRGQFFQNCYETSMVFSKLLKRPDKLIIIKSGQYPITSE
NARQINSKLDENDCFEIQNSFHMKSLVESNE**iknklkin*kkklkktkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01980-1 (Contig-U01980-1Q)
/CSM_Contig/Contig-U01980-1Q.Seq.d
         (696 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Conti...  1239  0.0
Contig-U10854-1 (Contig-U10854-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U08110-1 (Contig-U08110-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13293-1 (Contig-U13293-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U01253-1 (Contig-U01253-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U14177-1 (Contig-U14177-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U12325-1 (Contig-U12325-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11115-1 (Contig-U11115-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U12545-1 (Contig-U12545-1Q) /CSM_Contig/Conti...    30  3.0

>Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Contig-U01980-1Q.Seq.d
          Length = 696

 Score = 1239 bits (625), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggttccagttgtccgatggattcgggatgggtttgtgggtgttggtggaagggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttggttccagttgtccgatggattcgggatgggtttgtgggtgttggtggaagggtggg 60

                                                                       
Query: 61  gccccactcctttattgcctatccgggattttagggtgaagcnggatttcctttgtggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccccactcctttattgcctatccgggattttagggtgaagcnggatttcctttgtggcc 120

                                                                       
Query: 121 aatgtttccaattccttgattgccaattggttatcccaggtgggaaattgaccggttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgtttccaattccttgattgccaattggttatcccaggtgggaaattgaccggttttt 180

                                                                       
Query: 181 acaccttataatggtcaaaagaattttgtttacgtgatgttttcaaggctaaatgctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acaccttataatggtcaaaagaattttgtttacgtgatgttttcaaggctaaatgctccc 240

                                                                       
Query: 241 cacgggtcccaaaggaaactcagtatggtttacctttgaaaatcaccactttcgataagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacgggtcccaaaggaaactcagtatggtttacctttgaaaatcaccactttcgataagt 300

                                                                       
Query: 301 gtccaggtcttcgaattgttttcattctcttgtcacttgtccgaactaaccggtttggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtccaggtcttcgaattgttttcattctcttgtcacttgtccgaactaaccggtttggtg 360

                                                                       
Query: 361 gcgtttgcggtgtaggtcgtttattcggtgctgggtcaagagctcgtttagggttatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgtttgcggtgtaggtcgtttattcggtgctgggtcaagagctcgtttagggttatgca 420

                                                                       
Query: 421 tcttttgtaggggacaattctttcaaaattgttatgaaacttcaatggttttctcaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttttgtaggggacaattctttcaaaattgttatgaaacttcaatggttttctcaaaac 480

                                                                       
Query: 481 tcttaaaaagacctgataaattaattatcattaaatctggacaatatccaatcacttctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcttaaaaagacctgataaattaattatcattaaatctggacaatatccaatcacttctg 540

                                                                       
Query: 541 aaaatgctcgtcaaattaattcaaaacttgatgaaaatgattgttttgaaattcaaaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaatgctcgtcaaattaattcaaaacttgatgaaaatgattgttttgaaattcaaaatt 600

                                       
Query: 601 ctttccatatgaaatcattagttgaatc 628
           ||||||||||||||||||||||||||||
Sbjct: 601 ctttccatatgaaatcattagttgaatc 628


>Contig-U10854-1 (Contig-U10854-1Q) /CSM_Contig/Contig-U10854-1Q.Seq.d
          Length = 2008

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 568 ttgatgaaaatgattgttttgaaatt 593
           |||||||||||||| |||||||||||
Sbjct: 238 ttgatgaaaatgatagttttgaaatt 213


>Contig-U08110-1 (Contig-U08110-1Q) /CSM_Contig/Contig-U08110-1Q.Seq.d
          Length = 1531

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 574 aaaatgattgttttgaaatt 593
           ||||||||||||||||||||
Sbjct: 379 aaaatgattgttttgaaatt 360


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5862
Number of Sequences: 6905
Number of extensions: 5862
Number of successful extensions: 606
Number of sequences better than 10.0: 62
length of query: 696
length of database: 5,674,871
effective HSP length: 16
effective length of query: 680
effective length of database: 5,564,391
effective search space: 3783785880
effective search space used: 3783785880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.11
Homology vs DNA 
Query= Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Contig-U01980-1Q.Seq.d
         (696 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93922) Dictyostelium discoideum slug cDNA, clone SSL868.       1239   0.0    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   416   e-140  6
(AC232593) Lama pacos clone CH246-125G21, WORKING DRAFT SEQU...    38   0.31   4
(CR854912) Zebrafish DNA sequence from clone DKEY-39O12 in l...    48   0.45   1
(BX119907) Zebrafish DNA sequence from clone CH211-208D14 in...    48   0.45   1
(AC113550) Mus musculus chromosome 6, clone RP23-275L12, com...    48   0.45   1
(CR974446) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.45   1
(AC185294) Xenopus (Silurana) tropicalis clone CH216-39G17, ...    36   1.1    3
(AM270078) Aspergillus niger contig An04c0170, complete genome.    46   1.8    1
(BX538353) Cryptosporidium parvum chromosome 6, complete seq...    46   1.8    1
(FI512538) 078-TKN-MI_004_N22_T7 078-TKN-MI Meleagris gallop...    46   1.8    1
(ET221576) MFSA792TR Standard JTC phos vector with Fw & Rv p...    46   1.8    1
(CU724769) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.8    1
(AC160733) Bos taurus clone CH240-85J18, WORKING DRAFT SEQUE...    40   2.9    3
(AC161909) Bos taurus clone CH240-113G4, WORKING DRAFT SEQUE...    40   3.1    2
(CT304675) Sus scrofa genomic clone CH242-364C10, genomic su...    34   3.2    2
(AC022615) Homo sapiens clone RP11-691K18, LOW-PASS SEQUENCE...    34   3.6    2
(GD042267) CCHZ22169.g1 CCHZ Panicum virgatum abiotic and bi...    38   3.6    2
(GD042266) CCHZ22169.b1 CCHZ Panicum virgatum abiotic and bi...    38   3.7    2
(EJ521415) 1092955143221 Global-Ocean-Sampling_GS-29-01-01-1...    40   3.8    2
(CT329528) Sus scrofa genomic clone CH242-353L19, genomic su...    34   4.2    2
(EJ530439) 1092955221523 Global-Ocean-Sampling_GS-29-01-01-1...    40   4.4    2
(AC184429) Strongylocentrotus purpuratus clone R3-3089I6, WO...    40   5.4    4
(AC230074) Bos taurus clone CH240-522C21, WORKING DRAFT SEQU...    38   5.6    4
(CT961060) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   6.8    2
(CU929218) Zebrafish DNA sequence from clone CH1073-432E22 i...    44   7.1    1
(CU467876) Zebrafish DNA sequence from clone CH73-63K9 in li...    44   7.1    1
(CT737133) Zebrafish DNA sequence from clone DKEYP-100D11 in...    44   7.1    1
(CR631124) Zebrafish DNA sequence from clone DKEY-52E24 in l...    44   7.1    1
(CR382299) Zebrafish DNA sequence from clone DKEY-9I13 in li...    44   7.1    1
(BX927101) Zebrafish DNA sequence from clone CH211-120F16 in...    44   7.1    1
(BX890603) Zebrafish DNA sequence from clone DKEYP-19G9 in l...    44   7.1    1
(BX890550) Zebrafish DNA sequence from clone DKEYP-110B6 in ...    44   7.1    1
(BX649550) Zebrafish DNA sequence from clone CH211-120K2 in ...    44   7.1    1
(BX547992) Zebrafish DNA sequence from clone DKEY-225I9 in l...    44   7.1    1
(BX296527) Zebrafish DNA sequence from clone DKEYP-32C3 in l...    44   7.1    1
(BX284691) Zebrafish DNA sequence from clone CH211-224J19 in...    44   7.1    1
(CU679033) Synthetic construct Homo sapiens gateway clone IM...    44   7.1    1
(AC145554) Mus musculus BAC clone RP23-217E22 from chromosom...    44   7.1    1
(AC117260) Mus musculus BAC clone RP24-498G10 from chromosom...    44   7.1    1
(AM450596) Vitis vinifera contig VV78X207993.16, whole genom...    44   7.1    1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    44   7.1    1
(FP016041) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(CU929032) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(CU633831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(CU302270) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(CU104759) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(CR555292) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.1    1
(BX571847) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   7.1    1
(AZ327712) 1M0051E17F Mouse 10kb plasmid UUGC1M library Mus ...    44   7.1    1
(EJ852060) 1093017894479 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.1    1
(EJ467476) 1095403385891 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.1    1
(EJ442184) 1093015309667 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.1    1
(DE555704) Bombyx mori genomic DNA, Fosmid clone:GBMFno193_m...    44   7.1    1
(CW855111) shSc2d26-54.g_060.ab1 Whole-genome shotgun librar...    44   7.1    1
(EB682654) KP1B.113E22F.060117T7 KP1B Nicotiana tabacum cDNA...    44   7.1    1
(AU060756) Dictyostelium discoideum slug cDNA, clone SLB375.       44   7.1    1
(BJ427013) Dictyostelium discoideum cDNA clone:ddv61b02, 5' ...    44   7.1    1
(BJ369682) Dictyostelium discoideum cDNA clone:ddc51k10, 5' ...    44   7.1    1
(BJ337841) Dictyostelium discoideum cDNA clone:dda59m05, 5' ...    44   7.1    1
(BJ325316) Dictyostelium discoideum cDNA clone:dda13e23, 5' ...    44   7.1    1
(BJ323638) Dictyostelium discoideum cDNA clone:dda11d15, 5' ...    44   7.1    1
(FC292514) CAGN6615.fwd CAGN Nematostella vectensis Nemve mi...    44   7.1    1
(FC258961) CAGN11805.fwd CAGN Nematostella vectensis Nemve m...    44   7.1    1
(FC228867) CAGG2131.fwd CAGG Nematostella vectensis Nemve Ea...    44   7.1    1
(EY377764) CAXA16898.rev CAXA Helobdella robusta Subtracted ...    44   7.1    1
(EY365252) CAXA10074.rev CAXA Helobdella robusta Subtracted ...    44   7.1    1
(FP101954) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   8.9    3
(AC004025) Homo sapiens Xp22 BAC GS-321G17 (Genome Systems H...    40   9.0    3
(AL928964) Zebrafish DNA sequence from clone CH211-127I19.         40   9.2    4

>(C93922) Dictyostelium discoideum slug cDNA, clone SSL868.
          Length = 697

 Score = 1239 bits (625), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Plus


Query: 1   tttggttccagttgtccgatggattcgggatgggtttgtgggtgttggtggaagggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttggttccagttgtccgatggattcgggatgggtttgtgggtgttggtggaagggtggg 60


Query: 61  gccccactcctttattgcctatccgggattttagggtgaagcnggatttcctttgtggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccccactcctttattgcctatccgggattttagggtgaagcnggatttcctttgtggcc 120


Query: 121 aatgtttccaattccttgattgccaattggttatcccaggtgggaaattgaccggttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgtttccaattccttgattgccaattggttatcccaggtgggaaattgaccggttttt 180


Query: 181 acaccttataatggtcaaaagaattttgtttacgtgatgttttcaaggctaaatgctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acaccttataatggtcaaaagaattttgtttacgtgatgttttcaaggctaaatgctccc 240


Query: 241 cacgggtcccaaaggaaactcagtatggtttacctttgaaaatcaccactttcgataagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacgggtcccaaaggaaactcagtatggtttacctttgaaaatcaccactttcgataagt 300


Query: 301 gtccaggtcttcgaattgttttcattctcttgtcacttgtccgaactaaccggtttggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtccaggtcttcgaattgttttcattctcttgtcacttgtccgaactaaccggtttggtg 360


Query: 361 gcgtttgcggtgtaggtcgtttattcggtgctgggtcaagagctcgtttagggttatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgtttgcggtgtaggtcgtttattcggtgctgggtcaagagctcgtttagggttatgca 420


Query: 421 tcttttgtaggggacaattctttcaaaattgttatgaaacttcaatggttttctcaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttttgtaggggacaattctttcaaaattgttatgaaacttcaatggttttctcaaaac 480


Query: 481 tcttaaaaagacctgataaattaattatcattaaatctggacaatatccaatcacttctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcttaaaaagacctgataaattaattatcattaaatctggacaatatccaatcacttctg 540


Query: 541 aaaatgctcgtcaaattaattcaaaacttgatgaaaatgattgttttgaaattcaaaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaatgctcgtcaaattaattcaaaacttgatgaaaatgattgttttgaaattcaaaatt 600


Query: 601 ctttccatatgaaatcattagttgaatc 628
           ||||||||||||||||||||||||||||
Sbjct: 601 ctttccatatgaaatcattagttgaatc 628

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 733,105,660
Number of extensions: 40812187
Number of successful extensions: 3263538
Number of sequences better than 10.0: 71
Length of query: 696
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 672
Effective length of database: 99,340,224,878
Effective search space: 66756631118016
Effective search space used: 66756631118016
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Contig-U01980-1Q.Seq.d
         (696 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_82(AC116986|pid:none) Dictyostelium discoideum chromoso...   221   2e-56
EF553519_1(EF553519|pid:none) Homo sapiens clone DKFZp686B23123 ...    84   3e-15
(O60306) RecName: Full=Intron-binding protein aquarius; AltName:...    84   3e-15
BC108262_1(BC108262|pid:none) Homo sapiens aquarius homolog (mou...    84   3e-15
BC036913_1(BC036913|pid:none) Homo sapiens aquarius homolog (mou...    84   3e-15
AB172202_1(AB172202|pid:none) Macaca fascicularis brain cDNA clo...    84   3e-15
AB011132_1(AB011132|pid:none) Homo sapiens mRNA for KIAA0560 pro...    84   3e-15
T00333(T00333)hypothetical protein KIAA0560 - human                    84   3e-15
BC042479_1(BC042479|pid:none) Mus musculus aquarius, mRNA (cDNA ...    83   9e-15
AC103551_11(AC103551|pid:none) Oryza sativa chromosome 3 BAC OSJ...    83   9e-15
(Q8CFQ3) RecName: Full=Intron-binding protein aquarius;  &AK1455...    83   9e-15
BC140525_1(BC140525|pid:none) Bos taurus aquarius homolog (mouse...    83   9e-15
BC133727_1(BC133727|pid:none) Rattus norvegicus aquarius homolog...    83   9e-15
AC005499_3(AC005499|pid:none) Arabidopsis thaliana chromosome 2 ...    82   1e-14
AY099864_1(AY099864|pid:none) Arabidopsis thaliana unknown prote...    82   1e-14
AJ535685_1(AJ535685|pid:none) Cicer arietinum partial mRNA for h...    82   2e-14
BC166050_1(BC166050|pid:none) Xenopus laevis hypothetical protei...    80   8e-14
AL132853_2(AL132853|pid:none) Caenorhabditis elegans YAC Y80D3A,...    79   1e-13
BC160661_1(BC160661|pid:none) Danio rerio zgc:63611, mRNA (cDNA ...    79   1e-13
CU633900_992(CU633900|pid:none) Podospora anserina genomic DNA c...    78   2e-13
AY129431_1(AY129431|pid:none) Drosophila melanogaster GM03621 fu...    78   3e-13
AP007172_49(AP007172|pid:none) Aspergillus oryzae RIB40 genomic ...    77   5e-13
AM270309_50(AM270309|pid:none) Aspergillus niger contig An14c001...    75   2e-12
AE014297_1439(AE014297|pid:none) Drosophila melanogaster chromos...    71   4e-11
CR954205_63(CR954205|pid:none) Ostreococcus tauri strain OTTH059...    69   2e-10
CP000585_69(CP000585|pid:none) Ostreococcus lucimarinus CCE9901 ...    62   9e-09
CR382129_916(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    53   8e-06
AM910994_11(AM910994|pid:none) Plasmodium knowlesi strain H chro...    48   3e-04
CR940352_126(CR940352|pid:none) Theileria annulata strain Ankara...    47   4e-04
(O94508) RecName: Full=Cell cycle control protein cwf11;  &AL035...    47   4e-04
CP000494_2712(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    36   0.98
CP000494_6794(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    36   0.98
AY048579_1(AY048579|pid:none) Prunus cerasus vacuolar acid inver...    36   1.3
CU234118_313(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple...    35   2.9
CP000494_2745(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    33   6.4

>AC116986_82(AC116986|pid:none) Dictyostelium discoideum chromosome 2
            map 2234041-2567370 strain AX4, complete sequence.
          Length = 1033

 Score =  221 bits (563), Expect = 2e-56
 Identities = 121/168 (72%), Positives = 132/168 (78%)
 Frame = +3

Query: 126  FQFLDCQLVIPGGKLTGFYTL*WSKEFCLRDVFKAKCSPRVPKETQYGLPLKITTFDKCP 305
            FQ+L   +  P  K+T   T    K   LRDVFKAKC+P+ PK+TQYGLPLKITT DK
Sbjct: 866  FQYL-IAIGYPSEKITVLTTYNGQKNL-LRDVFKAKCTPQDPKKTQYGLPLKITTIDKYQ 923

Query: 306  GLRIVFILLSLVRTNRFGGVCGVGRLFGAGSRARLGLCIFCRGQFFQNCYETSMVFSKLL 485
            G +   ILLSLVRT ++G +  V RL  A SRARLGL IFC+ QFFQNCYETSMVFSKLL
Sbjct: 924  GQQNDIILLSLVRTKQYGHIRDVRRLIVAMSRARLGLYIFCKKQFFQNCYETSMVFSKLL 983

Query: 486  KRPDKLIIIKSGQYPITSENARQINSKLDENDCFEIQNSFHMKSLVES 629
            KRPDKLIIIKS QYPITSENARQINSKLDENDCFEIQNSFHMKSLVES
Sbjct: 984  KRPDKLIIIKSEQYPITSENARQINSKLDENDCFEIQNSFHMKSLVES 1031

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,241,332,246
Number of extensions: 26866076
Number of successful extensions: 113726
Number of sequences better than 10.0: 35
Number of HSP's gapped: 113391
Number of HSP's successfully gapped: 36
Length of query: 232
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 108
Effective length of database: 649,847,548
Effective search space: 70183535184
Effective search space used: 70183535184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.68  gvh: 0.64  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01980-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0