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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12701-1
Contig ID Contig-U12701-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Contig-U12701-1Q.Seq.d
ATTTTTTTTTTGTTGAGTCACTACAATAAAAATAATAAATAATAATAAAT
AATAAATAATACAAATTAGTTATTAATAAAATATGGCAAGATCAAAATAT
AGTAGTGGTGGTGGTAGTAGTTACAATGATAATGATAGTGGTAGTGATGA
TGATAGACATTTCATTTCAAAAAGTTCAATGAAATCCACAGTAAATGTTC
AACAACCACAACAAAAATTTCAAGATCTTTATTGTAACTCTAATACATGG
TCAGCAAGTAATTATGGAGGAAAAGTAATAAATGCAACTAAAGTACAAGA
GAAACAATTATTATCAATTACAGAGCATCCAAATTCAAAAGAAGTTAAAA
TTAAATTACCTTTAAAAGATTGGTTAGAATATTTAAAAGAGAATAGTAAT
AAAGAATCATCAATTCCATACTCAATTGAAAAATCATCATATATTGCAAA
TGTTGAAGATTTTAATGTATCTTTTAAATGTAATTTTGAAATTCATGTTT
TCCCTGAACCAAATTCAAAAGATAATAATAATAATAATAAGAATAATAAT
TGTGATCAAGTTCAAATACCATTATTACCATCAACAGTTTGTATAACATC
ATCATCAATTCAATTCAGTGGTAAAAATGATGATGAATCATGTATTGGTA
TTTATCAAGATGCTCATAGTTTATTTTGTGATAGAGTTGGTACCTATAAT
GTAGAGTTGAATGTTTTAGCAAACTTTTTAACACCAAAAAAGAATGGTGT
TGGTATTGCTTTACCAAAGGCAACTTTTAATCATTTAGAAATCTCTGTAC
CTAGAA
Gap no gap
Contig length 806
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1525077
End point 1524271
Strand (PLUS/MINUS) MINUS
Number of clones 14
Number of EST 14
Link to clone list U12701
List of clone(s) 

est1=SHE350F,1,587
est2=VHK442F,15,655
est3=AHQ334F,19,681
est4=VHA546F,19,681
est5=VHN385F,19,609
est6=VHB167F,20,669
est7=VHH568F,20,653
est8=VHI672F,20,611
est9=AHG582F,26,207
est10=CFH264F,26,644
est11=SSG607F,27,636
est12=VHC452F,31,674
est13=VHG738F,114,613
est14=VHB160F,178,806
Translated Amino Acid sequence 
fffc*vttikiinnnk**iiqisy**NMARSKYSSGGGSSYNDNDSGSDDDRHFISKSSM
KSTVNVQQPQQKFQDLYCNSNTWSASNYGGKVINATKVQEKQLLSITEHPNSKEVKIKLP
LKDWLEYLKENSNKESSIPYSIEKSSYIANVEDFNVSFKCNFEIHVFPEPNSKDNNNNNK
NNNCDQVQIPLLPSTVCITSSSIQFSGKNDDESCIGIYQDAHSLFCDRVGTYNVELNVLA
NFLTPKKNGVGIALPKATFNHLEISVPR
Translated Amino Acid sequence (All Frames) 
Frame A:
iffllshynknnk***iinntn*llikygkiki**www**lq****w*****tfhfkkfn
eihskcsttttkisrsll*l*ymvsk*lwrksnkcn*stretiiinyraskfkrs*n*it
fkrlvrifkre***riinsiln*kiiiyckc*rf*cif*m*f*nscfp*tkfkr******
e**l*sssntiitinslyniiinsiqw*k***imywylsrcs*fil**swyl*crvecfs
klfntkkewcwycftkgnf*sfrnlct*


Frame B:
fffc*vttikiinnnk**iiqisy**NMARSKYSSGGGSSYNDNDSGSDDDRHFISKSSM
KSTVNVQQPQQKFQDLYCNSNTWSASNYGGKVINATKVQEKQLLSITEHPNSKEVKIKLP
LKDWLEYLKENSNKESSIPYSIEKSSYIANVEDFNVSFKCNFEIHVFPEPNSKDNNNNNK
NNNCDQVQIPLLPSTVCITSSSIQFSGKNDDESCIGIYQDAHSLFCDRVGTYNVELNVLA
NFLTPKKNGVGIALPKATFNHLEISVPR


Frame C:
fffveslq*k**iiinnk*yklvinkiwqdqnivvvvvvvtmimivvvmmidisfqkvq*
npq*mfnnhnknfkifivtlihgqqvimeek**mqlkykrnnyyqlqsiqiqkklklnyl
*kig*ni*kriviknhqfhtqlknhhilqmlkilmyllnvilkfmfslnqiqkiiiiiir
iiivikfkyhyyhqqfv*hhhqfnsvvkmmmnhvlvfikmlivyfvielvpim*s*mf*q
tf*hqkrmvlvllyqrqllii*kslyle
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12701-1 (Contig-U12701-1Q)
/CSM_Contig/Contig-U12701-1Q.Seq.d
         (806 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Conti...   868  0.0
Contig-U14500-1 (Contig-U14500-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U13460-1 (Contig-U13460-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09658-1 (Contig-U09658-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09366-1 (Contig-U09366-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14435-1 (Contig-U14435-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12565-1 (Contig-U12565-1Q) /CSM_Contig/Conti...    40  0.004

>Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Contig-U12701-1Q.Seq.d
          Length = 806

 Score =  868 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Plus

                                                                       
Query: 84  tggcaagatcaaaatatagtagtggtggtggtagtagttacaatgataatgatagtggta 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tggcaagatcaaaatatagtagtggtggtggtagtagttacaatgataatgatagtggta 143

                                                                       
Query: 144 gtgatgatgatagacatttcatttcaaaaagttcaatgaaatccacagtaaatgttcaac 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gtgatgatgatagacatttcatttcaaaaagttcaatgaaatccacagtaaatgttcaac 203

                                                                       
Query: 204 aaccacaacaaaaatttcaagatctttattgtaactctaatacatggtcagcaagtaatt 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaccacaacaaaaatttcaagatctttattgtaactctaatacatggtcagcaagtaatt 263

                                                                       
Query: 264 atggaggaaaagtaataaatgcaactaaagtacaagagaaacaattattatcaattacag 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggaggaaaagtaataaatgcaactaaagtacaagagaaacaattattatcaattacag 323

                                                                       
Query: 324 agcatccaaattcaaaagaagttaaaattaaattacctttaaaagattggttagaatatt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcatccaaattcaaaagaagttaaaattaaattacctttaaaagattggttagaatatt 383

                                                                       
Query: 384 taaaagagaatagtaataaagaatcatcaattccatactcaattgaaaaatcatcatata 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaagagaatagtaataaagaatcatcaattccatactcaattgaaaaatcatcatata 443

                                                                       
Query: 444 ttgcaaatgttgaagattttaatgtatcttttaaatgtaattttgaaattcatgttttcc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcaaatgttgaagattttaatgtatcttttaaatgtaattttgaaattcatgttttcc 503

                             
Query: 504 ctgaaccaaattcaaaag 521
           ||||||||||||||||||
Sbjct: 504 ctgaaccaaattcaaaag 521


 Score =  507 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Plus

                                                                       
Query: 551 tgtgatcaagttcaaataccattattaccatcaacagtttgtataacatcatcatcaatt 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgtgatcaagttcaaataccattattaccatcaacagtttgtataacatcatcatcaatt 610

                                                                       
Query: 611 caattcagtggtaaaaatgatgatgaatcatgtattggtatttatcaagatgctcatagt 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caattcagtggtaaaaatgatgatgaatcatgtattggtatttatcaagatgctcatagt 670

                                                                       
Query: 671 ttattttgtgatagagttggtacctataatgtagagttgaatgttttagcaaacttttta 730
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttattttgtgatagagttggtacctataatgtagagttgaatgttttagcaaacttttta 730

                                                                       
Query: 731 acaccaaaaaagaatggtgttggtattgctttaccaaaggcaacttttaatcatttagaa 790
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 acaccaaaaaagaatggtgttggtattgctttaccaaaggcaacttttaatcatttagaa 790

                           
Query: 791 atctctgtacctagaa 806
           ||||||||||||||||
Sbjct: 791 atctctgtacctagaa 806


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  attttttttttgttgagtcactac 24
          ||||||||||||||||||||||||
Sbjct: 1  attttttttttgttgagtcactac 24


>Contig-U14500-1 (Contig-U14500-1Q) /CSM_Contig/Contig-U14500-1Q.Seq.d
          Length = 2142

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 433 atcatcatatattgcaaatgttgaagatttt 463
           |||||| ||||||| ||||||||||||||||
Sbjct: 591 atcatcttatattgaaaatgttgaagatttt 621


>Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Contig-U12467-1Q.Seq.d
          Length = 1279

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 99  atagtagtggtggtggtagtagt 121
           |||||||||||||||||||||||
Sbjct: 789 atagtagtggtggtggtagtagt 811


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,698
Number of Sequences: 6905
Number of extensions: 24698
Number of successful extensions: 3068
Number of sequences better than 10.0: 416
length of query: 806
length of database: 5,674,871
effective HSP length: 16
effective length of query: 790
effective length of database: 5,564,391
effective search space: 4395868890
effective search space used: 4395868890
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Contig-U12701-1Q.Seq.d
         (806 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ419275) Dictyostelium discoideum cDNA clone:ddv35h14, 5' ...   833   0.0    2
(BJ418330) Dictyostelium discoideum cDNA clone:ddv32k11, 5' ...   833   0.0    2
(BJ338857) Dictyostelium discoideum cDNA clone:dda63d09, 5' ...   833   0.0    2
(BJ418664) Dictyostelium discoideum cDNA clone:ddv33g15, 5' ...   682   0.0    2
(BJ424068) Dictyostelium discoideum cDNA clone:ddv51d12, 5' ...   833   0.0    2
(BJ422637) Dictyostelium discoideum cDNA clone:ddv46g17, 5' ...   833   0.0    2
(BJ359634) Dictyostelium discoideum cDNA clone:ddc15o16, 5' ...   833   0.0    2
(BJ418656) Dictyostelium discoideum cDNA clone:ddv33e17, 5' ...   392   0.0    3
(BJ423292) Dictyostelium discoideum cDNA clone:ddv48o18, 5' ...   833   0.0    2
(BJ426023) Dictyostelium discoideum cDNA clone:ddv57j21, 5' ...   833   0.0    2
(BJ393760) Dictyostelium discoideum cDNA clone:dds32d13, 5' ...   751   0.0    2
(BJ421965) Dictyostelium discoideum cDNA clone:ddv44l09, 5' ...   664   0.0    2
(AU073299) Dictyostelium discoideum slug cDNA, clone SSG607.      327   4e-85  1
(BJ333999) Dictyostelium discoideum cDNA clone:dda44c21, 5' ...   204   4e-48  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.001  16
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.003  8
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.008  14
(CT009495) Mouse DNA sequence from clone RP23-127E21 on chro...    54   0.008  1
(AC158393) Mus musculus BAC clone RP23-368G21 from chromosom...    54   0.008  1
(AC178592) Strongylocentrotus purpuratus clone R3-113N07, WO...    46   0.011  5
(AC181279) Strongylocentrotus purpuratus clone R3-4015J17, W...    36   0.022  2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    40   0.023  9
(AC177283) Strongylocentrotus purpuratus clone R3-1033G9, WO...    52   0.033  1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.046  11
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.063  10
(AC176752) Strongylocentrotus purpuratus clone R3-3097K1, WO...    38   0.064  4
(AC181322) Strongylocentrotus purpuratus clone R3-4017N15, W...    34   0.078  2
(AL807384) Mouse DNA sequence from clone RP23-18F9 on chromo...    36   0.079  2
(AC102807) Mus musculus clone RP23-172L12, WORKING DRAFT SEQ...    36   0.079  2
(AC181214) Strongylocentrotus purpuratus clone R3-4008N7, WO...    36   0.081  2
(AC179337) Strongylocentrotus purpuratus clone R3-57L15, WOR...    34   0.081  2
(FC161735) 1106908675624 BABEVPN-C-01-1-7KB Papio anubis cDN...    48   0.088  2
(EK567312) 1095521049226 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.11   2
(AC162485) Bos taurus clone CH240-119O24, WORKING DRAFT SEQU...    50   0.13   3
(AC153858) Mus musculus 10 BAC RP23-139H21 (Roswell Park Can...    50   0.13   1
(AC121142) Mus musculus chromosome 10, clone RP23-479G23, co...    50   0.13   1
(CU914514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.13   1
(AC218726) Bos taurus clone CH240-295M24, WORKING DRAFT SEQU...    50   0.13   1
(FE776429) CCAG875.b7 CCAG Petrolisthes cinctipes heart, gil...    50   0.13   1
(AL050322) Human DNA sequence from clone RP4-727I10 on chrom...    38   0.14   3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.14   8
(EI999908) SB_BBc188-D12.R SB_BBc Sorghum bicolor genomic 3'...    38   0.18   3
(ER692383) SB_BBc47-C13.R SB_BBc Sorghum bicolor genomic 3',...    38   0.20   3
(AC176485) Strongylocentrotus purpuratus clone R3-114M14, WO...    36   0.25   6
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.25   7
(AC135751) Rattus norvegicus clone CH230-82A16, WORKING DRAF...    38   0.29   2
(AC112465) Rattus norvegicus clone CH230-126J21, WORKING DRA...    34   0.29   2
(AF225898) Homo sapiens BAC clone 13d21, complete sequence.        36   0.29   2
(AL117340) Human DNA sequence from clone RP11-192P3 on chrom...    36   0.29   2
(AC181814) Strongylocentrotus purpuratus clone R3-1023P17, W...    34   0.30   2
(EY297492) CAWX13394.fwd CAWX Helobdella robusta Primary Ear...    40   0.38   2
(EY291827) CAWX10213.fwd CAWX Helobdella robusta Primary Ear...    40   0.39   2
(DU954622) 222888 Tomato MboI BAC Library Solanum lycopersic...    40   0.41   2
(CP000501) Pichia stipitis CBS 6054 chromosome 7, complete s...    48   0.52   1
(BD093727) Human 1p36 homozygous deletion region.                  48   0.52   1
(BC054017) Homo sapiens peroxisomal biogenesis factor 14, mR...    48   0.52   1
(AL591403) Human DNA sequence from clone RP11-108G8 on chrom...    48   0.52   1
(AC109530) Rattus norvegicus clone CH230-99D18, *** SEQUENCI...    48   0.52   1
(AP003162) Homo sapiens genomic DNA, chromosome 1p36.2-p36 c...    48   0.52   1
(AC212779) Zea mays chromosome 2 clone CH201-110I6; ZMMBBc01...    48   0.52   1
(AC204362) Zea mays chromosome 4 clone ZMMBBb-539B7; ZMMBBb0...    48   0.52   1
(AC178342) Strongylocentrotus purpuratus clone R3-3105C12, W...    48   0.52   1
(AC168365) Strongylocentrotus purpuratus clone R3-4013M22, W...    48   0.52   1
(FH532671) CHO_OF4135xd06r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.52   1
(FH388041) CHO_OF4763xp21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.52   1
(ET993904) CHO_OF807xd04r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.52   1
(ET955940) CHO_OF580xd02r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.52   1
(ER760456) SB_BBc177-N16.R SB_BBc Sorghum bicolor genomic 3'...    48   0.52   1
(CW080974) 104_416_10940720_116_32272_024 Sorghum methylatio...    48   0.52   1
(CW080973) 104_416_10940720_114_32344_024 Sorghum methylatio...    48   0.52   1
(CW080972) 104_416_10940720_114_32268_024 Sorghum methylatio...    48   0.52   1
(CL160430) 104_351_10804979_116_31825_035 Sorghum methylatio...    48   0.52   1
(DB188440) Homo sapiens cDNA clone TLIVE2008780, 5' end, mRN...    48   0.52   1
(BU960429) AGENCOURT_10628160 NIH_MGC_141 Homo sapiens cDNA ...    48   0.52   1
(BE793103) 601583136F1 NIH_MGC_7 Homo sapiens cDNA clone IMA...    48   0.52   1
(FE859234) CAFX774.fwd CAFX Pichia stipitis oxygen limited x...    48   0.52   1
(FE858826) CAFX560.fwd CAFX Pichia stipitis oxygen limited x...    48   0.52   1
(FE848394) CAFO1486.fwd CAFO Pichia stipitis aerobic xylose ...    48   0.52   1
(FE843891) CAFH1582.fwd CAFH Pichia stipitis aerobic dextros...    48   0.52   1
(CU463320) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.53   6
(AC178555) Strongylocentrotus purpuratus clone R3-3027K02, W...    44   0.53   6
(AC158221) Mus musculus chromosome 8 clone RP23-128N7 map 8,...    38   0.68   4
(AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ...    30   0.73   5
(AC096405) Rattus norvegicus clone CH230-58M21, *** SEQUENCI...    38   0.74   8
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.76   7
(AC199288) Spermophilus tridecemlineatus clone VMRC20-376A11...    40   0.89   2
(AC175878) Strongylocentrotus purpuratus clone R3-15D19, WOR...    34   1.0    2
(AC149973) Strongylocentrotus purpuratus clone R3-32A17, WOR...    36   1.0    2
(AC181180) Strongylocentrotus purpuratus clone R3-15C3, WORK...    34   1.0    2
(AC129356) Rattus norvegicus clone CH230-286G14, WORKING DRA...    34   1.0    2
(AC174177) Strongylocentrotus purpuratus clone R3-3078A16, W...    34   1.1    2
(AC165083) Mus musculus BAC clone RP23-411I6 from chromosome...    34   1.1    2
(AC180090) Strongylocentrotus purpuratus clone R3-3001I05, W...    36   1.1    2
(AC166968) Mus musculus chromosome 18 clone RP24-335J23 map ...    34   1.1    2
(AC177200) Strongylocentrotus purpuratus clone R3-4018N23, W...    36   1.1    2
(AC133495) Mus musculus BAC clone RP24-331G15 from chromosom...    32   1.1    2
(AC131714) Mus musculus BAC clone RP23-179L6 from chromosome...    34   1.1    2
(AC215676) Zea mays chromosome 1 clone CH201-158E21; ZMMBBc0...    34   1.1    2
(AC157548) Mus musculus chromosome 18, clone RP24-310H1, com...    34   1.1    2
(AC175888) Strongylocentrotus purpuratus clone R3-15B21, WOR...    34   1.1    2

>(BJ419275) Dictyostelium discoideum cDNA clone:ddv35h14, 5' end,
           single read.
          Length = 644

 Score =  833 bits (420), Expect(2) = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Plus


Query: 102 gtagtggtggtggtagtagttacaatgataatgatagtggtagtgatgatgatagacatt 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gtagtggtggtggtagtagttacaatgataatgatagtggtagtgatgatgatagacatt 131


Query: 162 tcatttcaaaaagttcaatgaaatccacagtaaatgttcaacaaccacaacaaaaatttc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tcatttcaaaaagttcaatgaaatccacagtaaatgttcaacaaccacaacaaaaatttc 191


Query: 222 aagatctttattgtaactctaatacatggtcagcaagtaattatggaggaaaagtaataa 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aagatctttattgtaactctaatacatggtcagcaagtaattatggaggaaaagtaataa 251


Query: 282 atgcaactaaagtacaagagaaacaattattatcaattacagagcatccaaattcaaaag 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atgcaactaaagtacaagagaaacaattattatcaattacagagcatccaaattcaaaag 311


Query: 342 aagttaaaattaaattacctttaaaagattggttagaatatttaaaagagaatagtaata 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagttaaaattaaattacctttaaaagattggttagaatatttaaaagagaatagtaata 371


Query: 402 aagaatcatcaattccatactcaattgaaaaatcatcatatattgcaaatgttgaagatt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagaatcatcaattccatactcaattgaaaaatcatcatatattgcaaatgttgaagatt 431


Query: 462 ttaatgtatcttttaaatgtaattttgaaattcatgttttccctgaaccaaattcaaaag 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttaatgtatcttttaaatgtaattttgaaattcatgttttccctgaaccaaattcaaaag 491

 Score =  246 bits (124), Expect(2) = 0.0
 Identities = 124/124 (100%)
 Strand = Plus / Plus


Query: 551 tgtgatcaagttcaaataccattattaccatcaacagtttgtataacatcatcatcaatt 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtgatcaagttcaaataccattattaccatcaacagtttgtataacatcatcatcaatt 580


Query: 611 caattcagtggtaaaaatgatgatgaatcatgtattggtatttatcaagatgctcatagt 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caattcagtggtaaaaatgatgatgaatcatgtattggtatttatcaagatgctcatagt 640


Query: 671 ttat 674
           ||||
Sbjct: 641 ttat 644

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 964,474,111
Number of extensions: 63723511
Number of successful extensions: 5374523
Number of sequences better than 10.0: 394
Length of query: 806
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 782
Effective length of database: 97,308,875,965
Effective search space: 76095541004630
Effective search space used: 76095541004630
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Contig-U12701-1Q.Seq.d
         (806 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O67125) RecName: Full=DNA polymerase III subunit alpha;        ...    35   2.2
U91318_4(U91318|pid:none) Human chromosome 16 BAC clone CIT987SK...    34   6.4
(Q15155) RecName: Full=Nodal modulator 1; AltName: Full=pM5; Fla...    34   6.4
AE017245_113(AE017245|pid:none) Mycoplasma synoviae 53, complete...    33   8.4

>(O67125) RecName: Full=DNA polymerase III subunit alpha;
           EC=2.7.7.7;  &AE000657_699(AE000657|pid:none)
           &B70387(B70387)
          Length = 1161

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
 Frame = -1

Query: 767 LVKQYQHHSFLV------LKSLLKHSTLHYRYQLYHK--INYEHLDKY 648
           +  +Y HH  L+      LK+L+K STL Y+   Y+K  I+YE L+KY
Sbjct: 88  ITDKYNHHLILIAKDDKGLKNLMKLSTLAYKEGFYYKPRIDYELLEKY 135

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 972,408,937
Number of extensions: 16960337
Number of successful extensions: 48843
Number of sequences better than 10.0: 4
Number of HSP's gapped: 48803
Number of HSP's successfully gapped: 4
Length of query: 268
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 142
Effective length of database: 643,374,430
Effective search space: 91359169060
Effective search space used: 91359169060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.80  gvh: 0.28  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U12701-1 is cyt
VS (DIR, S) 0
VH (FL, L) 9
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0